Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18565

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,000,271	+		DZA65_RS18560	0.37	+0.2
4,000,274	+		DZA65_RS18560	0.37	+0.1
4,000,278	+		DZA65_RS18560	0.37	+0.7
4,000,282	+		DZA65_RS18560	0.37	-0.7
4,000,283	-		DZA65_RS18560	0.37	-0.9
4,000,284	+		DZA65_RS18560	0.38	+0.1
4,000,284	+		DZA65_RS18560	0.38	-0.3
4,000,285	-		DZA65_RS18560	0.38	-0.6
4,000,293	-		DZA65_RS18560	0.38	+0.3
4,000,323	-		DZA65_RS18560	0.40	+0.0
4,000,323	-		DZA65_RS18560	0.40	+0.7
4,000,423	+		DZA65_RS18560	0.48	-0.6
4,000,426	-		DZA65_RS18560	0.48	-0.6
4,000,470	-		DZA65_RS18560	0.51	-1.3
4,000,515	+		DZA65_RS18560	0.55	-0.7
4,000,591	+		DZA65_RS18560	0.60	+1.5
4,000,636	-		DZA65_RS18560	0.64	+1.1
4,000,667	-		DZA65_RS18560	0.66	+0.7
4,000,682	-		DZA65_RS18560	0.67	-1.1
4,000,683	+		DZA65_RS18560	0.67	-0.3
4,000,683	+		DZA65_RS18560	0.67	-1.7
4,000,684	-		DZA65_RS18560	0.67	+3.4
4,000,735	+		DZA65_RS18560	0.71	+0.1
4,000,735	+		DZA65_RS18560	0.71	+0.2
4,000,741	+		DZA65_RS18560	0.72	-0.0
4,000,741	+		DZA65_RS18560	0.72	+0.1
4,000,741	+		DZA65_RS18560	0.72	-0.4
4,000,741	+		DZA65_RS18560	0.72	+0.0
4,000,741	+		DZA65_RS18560	0.72	+0.3
4,000,767	+		DZA65_RS18560	0.74	-3.2
4,000,767	+		DZA65_RS18560	0.74	+1.5
4,000,771	+		DZA65_RS18560	0.74	-1.2
4,001,129	-				+1.2
4,001,129	-				+0.6
4,001,149	+				+0.9
4,001,164	-				-2.8
4,001,195	+				+0.2
4,001,196	-				-0.7
4,001,200	+				-0.3
4,001,200	+				-1.3
4,001,200	+				-2.3
4,001,200	+				-1.9
4,001,200	+				+0.3
4,001,200	+				-1.7
4,001,201	-				-0.4
4,001,201	-				-0.1
4,001,201	-				+0.3
4,001,201	-				-0.9
4,001,201	-				-0.6
4,001,201	-				+1.1
4,001,201	-				-0.6
4,001,201	-				+0.7
4,001,201	-				+0.7
4,001,201	-				+1.3
4,001,201	-				-0.5
4,001,243	+				-1.7
4,001,243	+				-0.3
4,001,243	+				-0.9
4,001,243	+				+0.9
4,001,362	+		DZA65_RS18565	0.12	-0.3
4,001,525	+		DZA65_RS18565	0.28	-1.7
4,001,525	+		DZA65_RS18565	0.28	-2.1
4,001,525	+		DZA65_RS18565	0.28	+0.9
4,001,525	+		DZA65_RS18565	0.28	+1.4
4,001,525	+		DZA65_RS18565	0.28	+0.4
4,001,525	+		DZA65_RS18565	0.28	-0.7
4,001,526	-		DZA65_RS18565	0.29	+1.3
4,001,526	-				-2.1
4,001,526	-		DZA65_RS18565	0.29	+0.1
4,001,526	-		DZA65_RS18565	0.29	-0.9
4,001,535	+		DZA65_RS18565	0.30	-2.5
4,001,570	+		DZA65_RS18565	0.33	-2.8
4,001,571	-		DZA65_RS18565	0.33	-0.9
4,001,571	-		DZA65_RS18565	0.33	+0.7
4,001,571	-		DZA65_RS18565	0.33	+2.0
4,001,571	-		DZA65_RS18565	0.33	+1.1
4,001,700	+		DZA65_RS18565	0.46	+0.4
4,001,701	-		DZA65_RS18565	0.46	+0.7
4,001,984	+		DZA65_RS18565	0.75	+2.3
4,001,984	+		DZA65_RS18565	0.75	-0.3
4,001,984	+		DZA65_RS18565	0.75	+0.4
4,001,985	-		DZA65_RS18565	0.75	-0.7
4,001,985	-		DZA65_RS18565	0.75	-1.9
4,001,985	-		DZA65_RS18565	0.75	-1.9
4,002,036	+		DZA65_RS18565	0.80	-0.6
4,002,037	-		DZA65_RS18565	0.80	+3.5
4,002,037	-		DZA65_RS18565	0.80	-1.3
4,002,037	-		DZA65_RS18565	0.80	-0.3
4,002,204	+				+0.4
4,002,205	-				-2.1
4,002,254	-				-0.9
4,002,374	+		DZA65_RS18570	0.14	-0.9
4,002,374	+		DZA65_RS18570	0.14	-0.0
4,002,374	+		DZA65_RS18570	0.14	-2.1
4,002,375	-		DZA65_RS18570	0.14	-0.7
4,002,375	-		DZA65_RS18570	0.14	+0.2
4,002,375	-		DZA65_RS18570	0.14	+0.7
4,002,380	+		DZA65_RS18570	0.15	-0.2
4,002,380	+		DZA65_RS18570	0.15	+0.1
4,002,381	-		DZA65_RS18570	0.15	-0.1
4,002,381	-		DZA65_RS18570	0.15	+0.4
4,002,398	+		DZA65_RS18570	0.17	+0.1
4,002,398	+		DZA65_RS18570	0.17	-0.9
4,002,398	+		DZA65_RS18570	0.17	-2.3
4,002,398	+				+1.4
4,002,398	+		DZA65_RS18570	0.17	-2.4
4,002,398	+		DZA65_RS18570	0.17	+0.7
4,002,399	-		DZA65_RS18570	0.17	+2.0
4,002,399	-		DZA65_RS18570	0.17	-0.3
4,002,399	-		DZA65_RS18570	0.17	+0.4
4,002,399	-		DZA65_RS18570	0.17	-0.9
4,002,399	-		DZA65_RS18570	0.17	+1.6
4,002,439	+		DZA65_RS18570	0.22	-0.0
4,002,484	-		DZA65_RS18570	0.28	-1.3
4,002,602	+		DZA65_RS18570	0.43	+0.7
4,002,606	+		DZA65_RS18570	0.44	-0.7
4,002,607	-		DZA65_RS18570	0.44	-0.6
4,002,607	-				-1.9
4,002,629	+		DZA65_RS18570	0.46	+0.1
4,002,629	+		DZA65_RS18570	0.46	-2.6
4,002,629	+		DZA65_RS18570	0.46	+0.9
4,002,629	+		DZA65_RS18570	0.46	+0.1
4,002,630	-		DZA65_RS18570	0.47	-0.3
4,002,630	-		DZA65_RS18570	0.47	-0.6
4,002,630	-		DZA65_RS18570	0.47	+1.0
4,002,630	-		DZA65_RS18570	0.47	+0.4
4,002,630	-		DZA65_RS18570	0.47	-1.6
4,002,683	+		DZA65_RS18570	0.53	-0.3
4,002,684	-		DZA65_RS18570	0.54	-0.3
4,002,684	-		DZA65_RS18570	0.54	+0.4
4,002,692	-		DZA65_RS18570	0.55	+1.3
4,002,960	-		DZA65_RS18570	0.89	+1.1
4,002,997	+				+0.5
4,002,997	+				-1.7
4,002,998	-				-0.3
4,002,998	-				+0.0
4,002,998	-				-0.0
4,003,000	+				+0.1
4,003,000	+				+2.3
4,003,000	+				-1.3
4,003,001	-				+0.1
4,003,001	-				-0.0
4,003,001	-				+1.3
4,003,087	+				+0.3
4,003,087	+				+0.7
4,003,087	+				-2.1
4,003,087	+				-2.1
4,003,087	+				+0.1
4,003,087	+				-0.2
4,003,087	+				-0.9
4,003,088	-				-0.6
4,003,088	-				+0.5
4,003,088	-				+1.8
4,003,088	-				-1.6
4,003,088	-				+2.0
4,003,088	-				-0.1
4,003,121	+				+1.2
4,003,121	+				+0.3
4,003,122	-				-3.1