Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16610

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,584,638	-		DZA65_RS16605	0.81	+2.1
3,584,738	+		DZA65_RS16605	0.87	-1.5
3,584,903	+				-1.8
3,584,945	+				-2.1
3,584,999	-				-0.1
3,585,004	+				+1.1
3,585,005	-				-1.3
3,585,005	-				-0.2
3,585,005	-				+0.6
3,585,005	-				+0.5
3,585,038	-				-1.5
3,585,038	-				-0.7
3,585,038	-				-3.4
3,585,060	-				-0.3
3,585,060	-				-2.3
3,585,060	-				-2.8
3,585,089	+				-3.6
3,585,164	+				-1.5
3,585,218	+		DZA65_RS16610	0.13	-1.8
3,585,219	-		DZA65_RS16610	0.13	-2.8
3,585,220	+		DZA65_RS16610	0.13	-5.8
3,585,221	-		DZA65_RS16610	0.13	-2.1
3,585,284	-		DZA65_RS16610	0.18	-1.8
3,585,284	-		DZA65_RS16610	0.18	-2.6
3,585,358	+		DZA65_RS16610	0.23	-3.2
3,585,358	+		DZA65_RS16610	0.23	-2.6
3,585,358	+		DZA65_RS16610	0.23	-1.5
3,585,358	+		DZA65_RS16610	0.23	-2.2
3,585,358	+		DZA65_RS16610	0.23	+0.5
3,585,358	+		DZA65_RS16610	0.23	-3.2
3,585,358	+		DZA65_RS16610	0.23	-2.8
3,585,359	-		DZA65_RS16610	0.23	-1.1
3,585,359	-		DZA65_RS16610	0.23	-1.1
3,585,359	-		DZA65_RS16610	0.23	-1.1
3,585,359	-		DZA65_RS16610	0.23	-2.6
3,585,366	+		DZA65_RS16610	0.23	-2.6
3,585,367	-		DZA65_RS16610	0.23	-2.3
3,585,572	+		DZA65_RS16610	0.37	-3.2
3,585,572	+		DZA65_RS16610	0.37	-2.8
3,585,572	+		DZA65_RS16610	0.37	-2.3
3,585,572	+		DZA65_RS16610	0.37	-1.8
3,585,573	-		DZA65_RS16610	0.38	-2.3
3,585,573	-		DZA65_RS16610	0.38	-4.2
3,585,573	-		DZA65_RS16610	0.38	-5.1
3,585,573	-		DZA65_RS16610	0.38	-2.1
3,585,675	+		DZA65_RS16610	0.44	-1.8
3,585,676	-		DZA65_RS16610	0.45	-0.5
3,585,676	-		DZA65_RS16610	0.45	-2.3
3,585,676	-		DZA65_RS16610	0.45	-1.1
3,585,708	-		DZA65_RS16610	0.47	-1.5
3,585,756	+		DZA65_RS16610	0.50	-2.1
3,585,756	+		DZA65_RS16610	0.50	-1.5
3,585,756	+		DZA65_RS16610	0.50	-2.8
3,585,756	+		DZA65_RS16610	0.50	+2.9
3,585,756	+		DZA65_RS16610	0.50	-0.1
3,585,756	+		DZA65_RS16610	0.50	-2.3
3,585,757	-		DZA65_RS16610	0.50	-0.5
3,585,757	-				-2.1
3,585,757	-		DZA65_RS16610	0.50	-0.5
3,585,757	-		DZA65_RS16610	0.50	-1.1
3,585,757	-		DZA65_RS16610	0.50	-2.3
3,585,757	-		DZA65_RS16610	0.50	-4.1
3,585,757	-		DZA65_RS16610	0.50	+0.5
3,585,757	-		DZA65_RS16610	0.50	-1.8
3,585,757	-		DZA65_RS16610	0.50	-2.5
3,585,788	+		DZA65_RS16610	0.52	-1.8
3,585,788	+		DZA65_RS16610	0.52	-2.3
3,585,788	+		DZA65_RS16610	0.52	-1.2
3,585,788	+		DZA65_RS16610	0.52	-1.8
3,585,788	+		DZA65_RS16610	0.52	-3.3
3,585,788	+		DZA65_RS16610	0.52	-0.1
3,585,788	+		DZA65_RS16610	0.52	-0.5
3,585,789	-		DZA65_RS16610	0.52	-2.5
3,585,789	-		DZA65_RS16610	0.52	-3.7
3,585,789	-		DZA65_RS16610	0.52	-3.1
3,585,789	-		DZA65_RS16610	0.52	-2.3
3,585,789	-		DZA65_RS16610	0.52	-2.1
3,585,854	+		DZA65_RS16610	0.57	-2.8
3,585,855	-		DZA65_RS16610	0.57	-0.5
3,585,855	-		DZA65_RS16610	0.57	-2.6
3,585,870	-		DZA65_RS16610	0.58	-4.1
3,585,894	+		DZA65_RS16610	0.59	-2.8
3,585,895	-		DZA65_RS16610	0.59	-5.4
3,585,934	-		DZA65_RS16610	0.62	-3.5
3,586,002	+		DZA65_RS16610	0.67	-0.5
3,586,002	+		DZA65_RS16610	0.67	-1.5
3,586,003	-		DZA65_RS16610	0.67	-2.1
3,586,092	-		DZA65_RS16610	0.73	-2.1
3,586,175	+		DZA65_RS16610	0.79	-3.1
3,586,175	+		DZA65_RS16610	0.79	-0.8
3,586,175	+		DZA65_RS16610	0.79	-2.3
3,586,262	+		DZA65_RS16610	0.85	-3.4
3,586,280	+		DZA65_RS16610	0.86	-3.3
3,586,281	-		DZA65_RS16610	0.86	-2.3
3,586,281	-		DZA65_RS16610	0.86	-2.7
3,586,395	-				-3.3
3,586,424	+				-2.3
3,586,424	+				-1.5
3,586,424	+				-1.7
3,586,425	-				-1.8
3,586,472	+				-1.1
3,586,472	+				-2.8
3,586,473	-				-1.1
3,586,482	+				-0.5
3,586,482	+				-1.1
3,586,482	+				-2.6
3,586,482	+				-1.5
3,586,482	+				+0.3
3,586,483	-				-1.5
3,586,483	-				-1.1
3,586,483	-				-2.7
3,586,483	-				+0.3
3,586,483	-				-2.3
3,586,483	-				-3.9
3,586,483	-				-2.9
3,586,483	-				-2.3
3,586,483	-				-1.8
3,586,483	-				-3.1
3,586,483	-				-3.4
3,586,483	-				-1.5
3,586,487	+				-2.6
3,586,487	+				+2.0
3,586,487	+				-3.3
3,586,487	+				-3.1
3,586,487	+				-5.2
3,586,487	+				-2.1
3,586,487	+				-2.6
3,586,487	+				-0.2
3,586,487	+				-0.5
3,586,488	-				-1.1
3,586,488	-				-1.5
3,586,488	-				-0.5
3,586,488	-				-1.7
3,586,488	-				-1.8
3,586,488	-				-1.5
3,586,488	-				-0.1
3,586,488	-				-1.7
3,586,488	-				+0.5
3,586,488	-				-0.5
3,586,493	+				-2.1
3,586,493	+				-1.8
3,586,493	+				-2.9
3,586,493	+				-3.9
3,586,493	+				-4.3
3,586,494	-				-4.8
3,586,519	+				+1.1
3,586,519	+				-1.5
3,586,519	+				-2.3
3,586,523	+				-2.1
3,586,523	+				-2.3
3,586,523	+				-0.4
3,586,528	+				-2.6
3,586,542	+				-2.1
3,586,542	+				-2.6
3,586,543	-				-2.8
3,586,543	-				-1.1
3,586,544	+				-0.5
3,586,544	+				-2.8
3,586,544	+				-1.1
3,586,544	+				-1.5
3,586,544	+				-0.7
3,586,545	-				-0.8
3,586,545	-				-2.4
3,586,545	-				-2.1
3,586,545	-				-1.8
3,586,615	-				+0.5
3,586,626	-				-2.9
3,586,684	+				+0.9
3,586,685	-				-2.1
3,586,688	+				+0.5
3,586,800	+		DZA65_RS16615	0.10	-0.5
3,586,806	-		DZA65_RS16615	0.11	+0.5
3,586,806	-		DZA65_RS16615	0.11	-1.2
3,586,806	-		DZA65_RS16615	0.11	+0.8
3,586,806	-		DZA65_RS16615	0.11	-2.5
3,586,923	+		DZA65_RS16615	0.19	-0.6
3,586,923	+		DZA65_RS16615	0.19	-2.3
3,586,923	+				-2.3
3,586,923	+		DZA65_RS16615	0.19	-0.5
3,586,924	-		DZA65_RS16615	0.19	-0.6
3,586,941	+		DZA65_RS16615	0.20	-1.5
3,586,961	+		DZA65_RS16615	0.22	+0.2
3,586,961	+		DZA65_RS16615	0.22	-0.7
3,586,962	-		DZA65_RS16615	0.22	-0.6
3,586,962	-		DZA65_RS16615	0.22	+0.4
3,586,962	-				+0.5
3,586,987	+		DZA65_RS16615	0.24	-1.5
3,586,987	+		DZA65_RS16615	0.24	-1.1
3,586,987	+		DZA65_RS16615	0.24	+0.4
3,586,987	+		DZA65_RS16615	0.24	+4.1
3,586,987	+		DZA65_RS16615	0.24	+2.1
3,586,987	+		DZA65_RS16615	0.24	+1.4
3,586,988	-		DZA65_RS16615	0.24	-0.3
3,586,988	-		DZA65_RS16615	0.24	-1.3
3,586,988	-		DZA65_RS16615	0.24	+0.2
3,587,049	+		DZA65_RS16615	0.28	+0.7
3,587,049	+		DZA65_RS16615	0.28	+1.5
3,587,049	+		DZA65_RS16615	0.28	-1.5
3,587,049	+		DZA65_RS16615	0.28	+0.3
3,587,049	+		DZA65_RS16615	0.28	-1.5
3,587,049	+		DZA65_RS16615	0.28	-0.8
3,587,049	+		DZA65_RS16615	0.28	+0.1
3,587,049	+		DZA65_RS16615	0.28	+0.2
3,587,050	-		DZA65_RS16615	0.28	+1.7
3,587,050	-		DZA65_RS16615	0.28	+0.8
3,587,050	-		DZA65_RS16615	0.28	-0.3
3,587,050	-		DZA65_RS16615	0.28	+0.1
3,587,050	-		DZA65_RS16615	0.28	-1.5
3,587,050	-		DZA65_RS16615	0.28	+0.3
3,587,050	-		DZA65_RS16615	0.28	-0.9
3,587,091	-		DZA65_RS16615	0.31	+0.2
3,587,091	-		DZA65_RS16615	0.31	-2.9
3,587,091	-		DZA65_RS16615	0.31	-0.8
3,587,093	+		DZA65_RS16615	0.31	+0.2
3,587,094	-		DZA65_RS16615	0.31	-1.6
3,587,094	-		DZA65_RS16615	0.31	-1.0
3,587,172	+		DZA65_RS16615	0.37	+0.1
3,587,172	+		DZA65_RS16615	0.37	+0.1
3,587,172	+		DZA65_RS16615	0.37	+0.5
3,587,173	-		DZA65_RS16615	0.37	-0.5
3,587,296	+		DZA65_RS16615	0.46	-0.1
3,587,296	+				-2.3
3,587,296	+		DZA65_RS16615	0.46	-1.3
3,587,296	+		DZA65_RS16615	0.46	+0.9
3,587,296	+		DZA65_RS16615	0.46	+0.5
3,587,296	+		DZA65_RS16615	0.46	+0.5
3,587,296	+		DZA65_RS16615	0.46	-1.3
3,587,296	+		DZA65_RS16615	0.46	+1.2
3,587,297	-		DZA65_RS16615	0.46	-1.5
3,587,297	-		DZA65_RS16615	0.46	+0.5
3,587,297	-		DZA65_RS16615	0.46	-0.3
3,587,297	-		DZA65_RS16615	0.46	+0.4
3,587,297	-		DZA65_RS16615	0.46	+0.8