Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15855

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,442,556	+				+1.1
3,442,557	-				-1.9
3,442,580	+				+1.5
3,442,580	+				-0.5
3,442,580	+				+0.5
3,442,580	+				-1.1
3,442,580	+				+0.1
3,442,581	-				+0.6
3,442,603	+				+0.5
3,442,603	+				-0.5
3,442,603	+				-1.1
3,442,604	-				-0.8
3,442,604	-				+0.3
3,442,604	-				+4.5
3,442,622	+				-0.9
3,442,623	-				-0.6
3,442,623	-				-1.1
3,442,631	+				+1.5
3,442,631	+				-1.1
3,442,632	-				+0.7
3,442,632	-				-0.3
3,442,633	+				+1.7
3,442,633	+				-1.5
3,442,634	-				-1.9
3,442,634	-				-1.3
3,442,634	-				+0.6
3,442,634	-				+2.2
3,442,658	-				-0.6
3,442,664	-				+0.5
3,442,670	+				-0.8
3,442,670	+				-1.5
3,442,726	+				+0.1
3,442,772	+				+0.5
3,442,772	+				-1.1
3,442,796	+				-0.9
3,442,797	-				-0.9
3,442,807	+				-0.5
3,442,807	+				+2.1
3,442,807	+				-0.1
3,442,808	-				-0.5
3,442,808	-				-1.1
3,442,896	+				-0.5
3,442,896	+				+1.8
3,442,896	+				+1.3
3,442,896	+				-1.1
3,442,896	+				+0.6
3,442,896	+				-0.2
3,442,896	+				+0.9
3,442,896	+				+0.9
3,442,896	+				+1.1
3,442,897	-				+0.8
3,442,897	-				+0.9
3,442,897	-				+0.1
3,442,919	+		DZA65_RS15850	0.12	+0.2
3,443,006	+		DZA65_RS15850	0.23	-1.0
3,443,007	-		DZA65_RS15850	0.23	-0.4
3,443,007	-		DZA65_RS15850	0.23	+1.0
3,443,007	-		DZA65_RS15850	0.23	-0.1
3,443,226	-		DZA65_RS15850	0.53	-0.5
3,443,226	-		DZA65_RS15850	0.53	-1.1
3,443,268	+		DZA65_RS15850	0.58	+2.3
3,443,268	+		DZA65_RS15850	0.58	+0.8
3,443,269	-		DZA65_RS15850	0.59	+0.9
3,443,287	+		DZA65_RS15850	0.61	+0.2
3,443,287	+		DZA65_RS15850	0.61	+0.1
3,443,305	-		DZA65_RS15850	0.63	+1.1
3,443,331	+		DZA65_RS15850	0.67	+0.5
3,443,370	+		DZA65_RS15850	0.72	-0.5
3,443,370	+		DZA65_RS15850	0.72	-0.3
3,443,370	+		DZA65_RS15850	0.72	-0.1
3,443,370	+		DZA65_RS15850	0.72	+1.1
3,443,370	+		DZA65_RS15850	0.72	+0.5
3,443,371	-		DZA65_RS15850	0.72	-0.9
3,443,371	-		DZA65_RS15850	0.72	-3.1
3,443,371	-		DZA65_RS15850	0.72	+1.2
3,443,371	-		DZA65_RS15850	0.72	-0.1
3,443,371	-		DZA65_RS15850	0.72	+0.5
3,443,561	-				-0.1
3,443,561	-				+1.2
3,443,561	-				-0.5
3,443,579	+				-1.1
3,443,579	+				+0.9
3,443,579	+				-0.1
3,443,579	+				-0.0
3,443,579	+				-0.3
3,443,579	+				+0.6
3,443,579	+				-1.1
3,443,580	-				+0.3
3,443,580	-				+0.7
3,443,580	-				-1.8
3,443,580	-				+0.1
3,443,580	-				+0.1
3,443,580	-				-2.6
3,443,580	-				+1.8
3,443,580	-				+0.2
3,443,820	+		DZA65_RS15855	0.17	-0.1
3,443,820	+		DZA65_RS15855	0.17	-2.1
3,443,820	+		DZA65_RS15855	0.17	+0.8
3,443,821	-		DZA65_RS15855	0.17	+1.5
3,443,861	-				-1.1
3,443,861	-		DZA65_RS15855	0.19	-2.3
3,443,930	-		DZA65_RS15855	0.24	-0.4
3,443,988	+		DZA65_RS15855	0.27	+2.1
3,443,988	+		DZA65_RS15855	0.27	+1.1
3,443,988	+		DZA65_RS15855	0.27	+0.2
3,443,988	+		DZA65_RS15855	0.27	-0.1
3,443,989	-		DZA65_RS15855	0.27	+0.9
3,443,989	-		DZA65_RS15855	0.27	+0.1
3,443,989	-		DZA65_RS15855	0.27	+0.5
3,443,989	-		DZA65_RS15855	0.27	+0.8
3,443,989	-		DZA65_RS15855	0.27	-1.5
3,444,331	+		DZA65_RS15855	0.49	-0.3
3,444,331	+		DZA65_RS15855	0.49	-1.9
3,444,613	+		DZA65_RS15855	0.67	-1.1
3,444,700	+		DZA65_RS15855	0.72	-0.5
3,444,700	+		DZA65_RS15855	0.72	-1.9
3,444,700	+		DZA65_RS15855	0.72	+0.1
3,444,700	+		DZA65_RS15855	0.72	-0.5
3,444,700	+		DZA65_RS15855	0.72	-1.1
3,444,836	+		DZA65_RS15855	0.81	+0.3
3,444,836	+		DZA65_RS15855	0.81	-2.0
3,444,836	+		DZA65_RS15855	0.81	-0.1
3,444,837	-		DZA65_RS15855	0.81	+0.2
3,444,837	-		DZA65_RS15855	0.81	-0.1
3,444,837	-		DZA65_RS15855	0.81	-1.1
3,444,837	-		DZA65_RS15855	0.81	-0.4
3,444,901	+		DZA65_RS15855	0.85	+1.1
3,444,901	+		DZA65_RS15855	0.85	+1.7
3,444,901	+		DZA65_RS15855	0.85	-0.1
3,444,901	+		DZA65_RS15855	0.85	+0.5
3,444,950	+		DZA65_RS15855	0.88	+2.0
3,444,950	+		DZA65_RS15855	0.88	-2.1
3,444,951	-		DZA65_RS15855	0.88	+0.5
3,444,978	+		DZA65_RS15855	0.90	-1.1
3,444,979	-		DZA65_RS15855	0.90	-2.1
3,444,979	-		DZA65_RS15855	0.90	-1.1
3,445,001	+				-0.9
3,445,033	+				-1.1
3,445,033	+				+0.9
3,445,033	+				-0.9
3,445,033	+				+0.2
3,445,034	-				-0.1
3,445,034	-				-0.7
3,445,034	-				-0.3
3,445,034	-				+1.3
3,445,152	+				-0.9
3,445,152	+				+0.2
3,445,152	+				-0.4
3,445,152	+				-0.5
3,445,152	+				+0.4
3,445,152	+				-1.0
3,445,152	+				-2.1
3,445,152	+				+0.2
3,445,152	+				-0.5
3,445,153	-				+0.7
3,445,153	-				-0.1
3,445,153	-				+0.0
3,445,153	-				+1.3
3,445,153	-				-0.9
3,445,153	-				+0.5
3,445,153	-				-1.6
3,445,153	-				+2.3
3,445,153	-				-0.1
3,445,153	-				-0.4
3,445,153	-				-0.3
3,445,154	+				-1.5
3,445,154	+				-0.5
3,445,155	-				-0.3
3,445,155	-				-1.1
3,445,155	-				-1.3
3,445,155	-				-0.1
3,445,155	-				-0.7
3,445,500	+		DZA65_RS15860	0.45	+0.5
3,445,500	+		DZA65_RS15860	0.45	+1.0
3,445,500	+		DZA65_RS15860	0.45	-0.1
3,445,501	-		DZA65_RS15860	0.45	-0.4
3,445,501	-		DZA65_RS15860	0.45	-0.8
3,445,501	-		DZA65_RS15860	0.45	+1.1
3,445,567	+		DZA65_RS15860	0.53	+1.2
3,445,567	+		DZA65_RS15860	0.53	+0.9
3,445,567	+		DZA65_RS15860	0.53	-0.3
3,445,568	-		DZA65_RS15860	0.53	+2.9
3,445,568	-		DZA65_RS15860	0.53	-1.5
3,445,568	-		DZA65_RS15860	0.53	-1.5
3,445,826	+		DZA65_RS15860	0.86	-1.2
3,445,855	+				-0.1
3,445,855	+				-0.5
3,445,856	-				-0.5
3,445,856	-				+0.2
3,445,897	-				-0.3
3,445,927	+				+0.5
3,445,927	+				-0.2
3,445,927	+				-0.5
3,445,928	-				+0.1
3,445,928	-				+1.2
3,445,928	-				+1.0
3,445,928	-				+0.4
3,446,001	+		DZA65_RS15865	0.10	+1.0
3,446,001	+		DZA65_RS15865	0.10	-1.3
3,446,002	-		DZA65_RS15865	0.11	+0.5
3,446,002	-		DZA65_RS15865	0.11	-0.9
3,446,002	-		DZA65_RS15865	0.11	+1.3
3,446,012	+		DZA65_RS15865	0.12	-0.5
3,446,012	+		DZA65_RS15865	0.12	-0.5
3,446,012	+		DZA65_RS15865	0.12	-2.2
3,446,032	+		DZA65_RS15865	0.15	+0.1
3,446,032	+		DZA65_RS15865	0.15	-0.7
3,446,032	+		DZA65_RS15865	0.15	-0.4
3,446,032	+				-0.3
3,446,032	+		DZA65_RS15865	0.15	-0.9
3,446,032	+		DZA65_RS15865	0.15	-1.0
3,446,033	-		DZA65_RS15865	0.15	-1.1
3,446,033	-		DZA65_RS15865	0.15	-2.1
3,446,033	-		DZA65_RS15865	0.15	+0.4
3,446,033	-		DZA65_RS15865	0.15	+0.2
3,446,033	-				-1.1
3,446,033	-		DZA65_RS15865	0.15	-0.8
3,446,033	-		DZA65_RS15865	0.15	+0.9
3,446,033	-		DZA65_RS15865	0.15	-1.3
3,446,033	-		DZA65_RS15865	0.15	+0.5
3,446,033	-		DZA65_RS15865	0.15	-2.1
3,446,033	-		DZA65_RS15865	0.15	-0.7
3,446,071	+		DZA65_RS15865	0.20	+0.2
3,446,075	+		DZA65_RS15865	0.21	+0.1
3,446,075	+		DZA65_RS15865	0.21	-1.1
3,446,075	+		DZA65_RS15865	0.21	-0.0
3,446,075	+		DZA65_RS15865	0.21	-1.5
3,446,075	+		DZA65_RS15865	0.21	+1.3
3,446,075	+		DZA65_RS15865	0.21	-0.7
3,446,076	-		DZA65_RS15865	0.21	+0.9
3,446,076	-		DZA65_RS15865	0.21	-2.1
3,446,076	-		DZA65_RS15865	0.21	-0.5
3,446,076	-		DZA65_RS15865	0.21	-2.1
3,446,085	+		DZA65_RS15865	0.22	+0.4