Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13990

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,002,168	+				+0.3
3,002,168	+				-2.8
3,002,168	+				-0.4
3,002,168	+				-2.3
3,002,169	-				-2.5
3,002,169	-				-2.3
3,002,169	-				-0.4
3,002,218	-				-2.4
3,002,218	-				-2.0
3,002,244	+				-2.3
3,002,245	-				-2.3
3,002,245	-				-1.7
3,002,245	-				-1.0
3,002,258	+				-1.5
3,002,258	+				-3.1
3,002,266	+				-1.3
3,002,266	+				+0.3
3,002,266	+				-2.5
3,002,266	+				-2.5
3,002,266	+				-1.3
3,002,266	+				-2.5
3,002,266	+				-1.3
3,002,267	-				-2.0
3,002,267	-				+0.5
3,002,267	-				-1.7
3,002,289	-				-0.9
3,002,330	+				-3.1
3,002,330	+				-3.4
3,002,330	+				-4.8
3,002,330	+				-2.7
3,002,330	+				-2.0
3,002,330	+				-2.5
3,002,331	-				+0.0
3,002,331	-				-1.1
3,002,331	-				+1.0
3,002,331	-				-2.7
3,002,334	+				-2.4
3,002,334	+				-0.4
3,002,335	-				-0.2
3,002,335	-				-1.7
3,002,358	+				-2.3
3,002,358	+				-1.8
3,002,358	+				-2.0
3,002,359	-				-0.7
3,002,359	-				-0.6
3,002,359	-				-0.7
3,002,359	-				+0.3
3,002,359	-				-1.7
3,002,407	+				-2.5
3,002,408	-				-0.8
3,002,421	+				-0.7
3,002,527	+		DZA65_RS13985	0.22	-1.3
3,002,528	-		DZA65_RS13985	0.22	-2.0
3,002,528	-		DZA65_RS13985	0.22	-2.0
3,002,528	-		DZA65_RS13985	0.22	-3.6
3,002,565	+		DZA65_RS13985	0.27	-0.7
3,002,611	+		DZA65_RS13985	0.32	-2.9
3,002,611	+		DZA65_RS13985	0.32	-3.9
3,002,611	+		DZA65_RS13985	0.32	-1.5
3,002,611	+		DZA65_RS13985	0.32	-2.8
3,002,611	+		DZA65_RS13985	0.32	-3.3
3,002,612	-		DZA65_RS13985	0.33	-2.0
3,002,612	-		DZA65_RS13985	0.33	-2.3
3,002,612	-		DZA65_RS13985	0.33	-3.1
3,002,612	-		DZA65_RS13985	0.33	-1.2
3,002,612	-		DZA65_RS13985	0.33	-1.5
3,002,612	-		DZA65_RS13985	0.33	-3.0
3,002,612	-		DZA65_RS13985	0.33	-1.8
3,002,621	-		DZA65_RS13985	0.34	-3.1
3,002,621	-		DZA65_RS13985	0.34	-3.4
3,002,799	+		DZA65_RS13985	0.56	-0.7
3,002,799	+		DZA65_RS13985	0.56	-3.8
3,002,799	+		DZA65_RS13985	0.56	+0.0
3,002,800	-		DZA65_RS13985	0.57	-2.5
3,002,800	-		DZA65_RS13985	0.57	-1.7
3,002,800	-		DZA65_RS13985	0.57	-2.3
3,002,800	-		DZA65_RS13985	0.57	-2.1
3,002,896	+		DZA65_RS13985	0.69	-2.4
3,003,003	+		DZA65_RS13985	0.83	-2.3
3,003,003	+		DZA65_RS13985	0.83	-3.0
3,003,004	-		DZA65_RS13985	0.83	-2.5
3,003,004	-		DZA65_RS13985	0.83	-3.3
3,003,004	-		DZA65_RS13985	0.83	-3.1
3,003,004	-		DZA65_RS13985	0.83	-1.9
3,003,037	+		DZA65_RS13985	0.87	-3.6
3,003,037	+		DZA65_RS13985	0.87	-0.1
3,003,037	+		DZA65_RS13985	0.87	-0.5
3,003,038	-		DZA65_RS13985	0.87	-2.1
3,003,038	-		DZA65_RS13985	0.87	-6.3
3,003,074	+				-4.3
3,003,074	+				-3.4
3,003,075	-				-1.3
3,003,167	+				-1.4
3,003,167	+				-3.8
3,003,167	+				-2.0
3,003,167	+				-2.3
3,003,167	+				-3.3
3,003,168	-				-1.7
3,003,168	-				-1.3
3,003,168	-				-2.0
3,003,168	-				-1.7
3,003,168	-				-1.9
3,003,168	-				-3.7
3,003,168	-				-2.1
3,003,181	+				-2.3
3,003,181	+				-5.2
3,003,181	+				-3.6
3,003,182	-				-1.3
3,003,182	-				-2.5
3,003,189	+				-0.8
3,003,189	+				-4.6
3,003,189	+				-2.8
3,003,201	+				-3.4
3,003,202	-				-3.2
3,003,202	-				-1.3
3,003,202	-				-1.0
3,003,202	-				-4.0
3,003,204	+				+0.3
3,003,205	-				-1.3
3,003,205	-				-2.5
3,003,286	-		DZA65_RS13990	0.16	-0.7
3,003,286	-		DZA65_RS13990	0.16	-1.2
3,003,295	-		DZA65_RS13990	0.17	-2.0
3,003,319	+		DZA65_RS13990	0.20	-0.1
3,003,319	+		DZA65_RS13990	0.20	-5.0
3,003,319	+		DZA65_RS13990	0.20	+0.3
3,003,343	+		DZA65_RS13990	0.23	-3.6
3,003,343	+		DZA65_RS13990	0.23	-0.7
3,003,344	-		DZA65_RS13990	0.24	-2.8
3,003,344	-		DZA65_RS13990	0.24	-1.5
3,003,478	-		DZA65_RS13990	0.41	-2.5
3,003,496	-		DZA65_RS13990	0.44	-4.1
3,003,496	-		DZA65_RS13990	0.44	-2.8
3,003,609	+		DZA65_RS13990	0.59	-3.4
3,003,610	-		DZA65_RS13990	0.59	-3.2
3,003,612	+		DZA65_RS13990	0.59	-1.7
3,003,612	+				-2.7
3,003,613	-		DZA65_RS13990	0.59	-3.3
3,003,613	-		DZA65_RS13990	0.59	-3.4
3,003,613	-		DZA65_RS13990	0.59	-2.5
3,003,624	+		DZA65_RS13990	0.61	-3.8
3,003,626	+		DZA65_RS13990	0.61	-2.0
3,003,626	+		DZA65_RS13990	0.61	-1.3
3,003,627	-		DZA65_RS13990	0.61	-3.7
3,003,627	-		DZA65_RS13990	0.61	-1.5
3,003,627	-		DZA65_RS13990	0.61	-0.4
3,003,627	-		DZA65_RS13990	0.61	-1.3
3,003,627	-		DZA65_RS13990	0.61	-3.3
3,003,627	-		DZA65_RS13990	0.61	-0.7
3,003,627	-		DZA65_RS13990	0.61	-0.4
3,003,705	-		DZA65_RS13990	0.71	-1.1
3,003,705	-		DZA65_RS13990	0.71	-4.9
3,003,705	-		DZA65_RS13990	0.71	-1.7
3,003,748	+		DZA65_RS13990	0.77	-2.0
3,003,748	+		DZA65_RS13990	0.77	-1.3
3,003,749	-				-1.7
3,003,749	-		DZA65_RS13990	0.77	-1.7
3,003,759	+		DZA65_RS13990	0.78	-3.5
3,003,759	+		DZA65_RS13990	0.78	-3.0
3,003,759	+		DZA65_RS13990	0.78	-4.3
3,003,760	-		DZA65_RS13990	0.79	-0.7
3,003,760	-		DZA65_RS13990	0.79	-1.8
3,003,760	-		DZA65_RS13990	0.79	-4.1
3,003,831	+		DZA65_RS13990	0.88	-3.1
3,003,832	-		DZA65_RS13990	0.88	-2.7
3,003,859	-				-3.6
3,003,859	-				-4.9
3,003,903	+				-2.7
3,003,903	+				+0.0
3,003,903	+				-1.5
3,003,905	+				-2.3
3,003,905	+				-3.4
3,003,905	+				-4.0
3,003,905	+				-3.1
3,003,905	+				-3.5
3,003,905	+				-4.7
3,003,905	+				-3.6
3,003,905	+				-2.3
3,003,905	+				-1.7
3,003,905	+				-1.3
3,003,905	+				-2.1
3,003,906	-				-0.3
3,003,906	-				-2.8
3,003,906	-				-2.0
3,003,906	-				-2.0
3,003,906	-				-1.3
3,003,906	-				-1.3
3,003,906	-				-3.8
3,003,906	-				-2.7
3,003,906	-				-2.8
3,003,906	-				-0.5
3,003,906	-				-2.7
3,003,906	-				-2.3
3,003,906	-				-3.4
3,003,906	-				-2.7
3,003,906	-				-3.8
3,003,906	-				-1.3
3,003,906	-				-1.5
3,003,906	-				-1.6
3,003,906	-				-1.4
3,003,910	-				-1.7
3,003,910	-				-2.0
3,003,910	-				-1.3
3,003,910	-				-2.0
3,003,910	-				-3.7
3,003,927	-				-3.0
3,003,936	-				-2.0
3,003,940	+				-4.6
3,003,941	-				+1.7
3,003,941	-				-2.7
3,003,944	+				-2.0
3,003,944	+				-4.0
3,003,944	+				-0.2
3,003,944	+				-2.5
3,003,945	-				-1.8
3,003,945	-				-3.1
3,004,011	-				-3.8
3,004,011	-				-2.1
3,004,014	+				-3.4
3,004,014	+				-3.1
3,004,015	-				-0.6
3,004,015	-				-3.8
3,004,015	-				-2.3
3,004,015	-				-2.3
3,004,048	-				-2.7
3,004,048	-				-1.3
3,004,120	+		DZA65_RS13995	0.15	-3.0
3,004,120	+		DZA65_RS13995	0.15	-2.3
3,004,120	+		DZA65_RS13995	0.15	-1.0
3,004,121	-		DZA65_RS13995	0.15	-1.7
3,004,121	-		DZA65_RS13995	0.15	-1.7
3,004,121	-		DZA65_RS13995	0.15	-3.6
3,004,161	+		DZA65_RS13995	0.18	-2.5
3,004,211	-		DZA65_RS13995	0.22	-4.6
3,004,211	-		DZA65_RS13995	0.22	-0.7
3,004,211	-		DZA65_RS13995	0.22	-2.8
3,004,244	+		DZA65_RS13995	0.25	-3.0
3,004,244	+		DZA65_RS13995	0.25	-4.5
3,004,245	-		DZA65_RS13995	0.25	-1.1
3,004,254	+		DZA65_RS13995	0.26	-1.8
3,004,281	-		DZA65_RS13995	0.28	-2.8
3,004,304	+		DZA65_RS13995	0.30	-3.7
3,004,305	-		DZA65_RS13995	0.30	-0.4
3,004,305	-		DZA65_RS13995	0.30	-2.0
3,004,413	+		DZA65_RS13995	0.39	-4.4
3,004,414	-		DZA65_RS13995	0.39	-2.7
3,004,422	+		DZA65_RS13995	0.40	-4.0
3,004,422	+		DZA65_RS13995	0.40	-2.2
3,004,423	-		DZA65_RS13995	0.40	-1.5
3,004,506	+		DZA65_RS13995	0.47	-3.1
3,004,517	+		DZA65_RS13995	0.48	-2.3
3,004,518	-				-1.7
3,004,518	-		DZA65_RS13995	0.48	-2.0
3,004,518	-		DZA65_RS13995	0.48	-3.0
3,004,533	+		DZA65_RS13995	0.49	-1.3
3,004,553	+		DZA65_RS13995	0.51	-3.5
3,004,553	+		DZA65_RS13995	0.51	-2.8
3,004,553	+		DZA65_RS13995	0.51	-2.2
3,004,567	-		DZA65_RS13995	0.52	-2.0
3,004,567	-		DZA65_RS13995	0.52	-3.0
3,004,584	+		DZA65_RS13995	0.53	-2.0
3,004,584	+		DZA65_RS13995	0.53	-1.7
3,004,584	+		DZA65_RS13995	0.53	-3.8
3,004,584	+		DZA65_RS13995	0.53	-1.7
3,004,584	+		DZA65_RS13995	0.53	-3.1
3,004,584	+		DZA65_RS13995	0.53	-2.8
3,004,584	+		DZA65_RS13995	0.53	-0.7
3,004,585	-		DZA65_RS13995	0.54	-3.4
3,004,585	-		DZA65_RS13995	0.54	-2.7
3,004,585	-		DZA65_RS13995	0.54	-2.0
3,004,585	-		DZA65_RS13995	0.54	-4.6
3,004,589	+		DZA65_RS13995	0.54	-1.7
3,004,589	+		DZA65_RS13995	0.54	+0.3
3,004,589	+		DZA65_RS13995	0.54	-1.7
3,004,590	-		DZA65_RS13995	0.54	-1.3
3,004,590	-		DZA65_RS13995	0.54	-1.0
3,004,590	-		DZA65_RS13995	0.54	-1.2
3,004,590	-		DZA65_RS13995	0.54	-2.5
3,004,590	-		DZA65_RS13995	0.54	-3.5
3,004,590	-		DZA65_RS13995	0.54	-3.3
3,004,590	-		DZA65_RS13995	0.54	-2.8
3,004,590	-		DZA65_RS13995	0.54	-1.7
3,004,590	-		DZA65_RS13995	0.54	-1.3
3,004,590	-		DZA65_RS13995	0.54	-1.3
3,004,599	+		DZA65_RS13995	0.55	-3.0
3,004,600	-		DZA65_RS13995	0.55	-2.3
3,004,600	-		DZA65_RS13995	0.55	-2.7
3,004,600	-		DZA65_RS13995	0.55	-5.3
3,004,608	+		DZA65_RS13995	0.55	-4.0
3,004,608	+		DZA65_RS13995	0.55	-3.5
3,004,608	+		DZA65_RS13995	0.55	-3.4
3,004,609	-		DZA65_RS13995	0.56	-3.7
3,004,610	+		DZA65_RS13995	0.56	-2.5
3,004,610	+		DZA65_RS13995	0.56	-3.4
3,004,610	+		DZA65_RS13995	0.56	-3.1
3,004,610	+		DZA65_RS13995	0.56	-2.7
3,004,610	+		DZA65_RS13995	0.56	-2.0
3,004,610	+		DZA65_RS13995	0.56	-4.6
3,004,610	+		DZA65_RS13995	0.56	-3.0
3,004,611	-		DZA65_RS13995	0.56	+0.1
3,004,611	-		DZA65_RS13995	0.56	-1.3
3,004,611	-		DZA65_RS13995	0.56	-2.5
3,004,611	-		DZA65_RS13995	0.56	-1.5
3,004,611	-		DZA65_RS13995	0.56	-3.9
3,004,611	-		DZA65_RS13995	0.56	-1.5
3,004,611	-		DZA65_RS13995	0.56	-1.9
3,004,620	+		DZA65_RS13995	0.56	-2.5
3,004,620	+		DZA65_RS13995	0.56	-2.0
3,004,620	+		DZA65_RS13995	0.56	-2.3
3,004,620	+		DZA65_RS13995	0.56	-2.0
3,004,621	-		DZA65_RS13995	0.56	-2.6
3,004,621	-		DZA65_RS13995	0.56	-2.8
3,004,621	-		DZA65_RS13995	0.56	-4.4
3,004,621	-		DZA65_RS13995	0.56	-1.8
3,004,812	+		DZA65_RS13995	0.72	-3.1
3,004,813	-		DZA65_RS13995	0.72	-2.7
3,004,813	-		DZA65_RS13995	0.72	-1.3
3,004,816	-		DZA65_RS13995	0.73	-2.7
3,004,862	+		DZA65_RS13995	0.77	-3.5
3,004,863	-		DZA65_RS13995	0.77	-2.5
3,004,863	-		DZA65_RS13995	0.77	+0.3
3,004,881	+		DZA65_RS13995	0.78	-2.8
3,004,895	+		DZA65_RS13995	0.79	-2.5
3,004,895	+		DZA65_RS13995	0.79	-5.2