Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13875

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,981,153	-		DZA65_RS13870	0.87	-2.0
2,981,153	-		DZA65_RS13870	0.87	-3.5
2,981,236	+				+1.3
2,981,236	+				-3.3
2,981,236	+				-0.1
2,981,236	+				-2.8
2,981,236	+				-4.8
2,981,236	+				-2.0
2,981,236	+				-3.3
2,981,237	-				-3.5
2,981,237	-				-2.3
2,981,237	-				-3.7
2,981,237	-				-1.7
2,981,237	-				-2.0
2,981,237	-				-2.4
2,981,237	-				-2.3
2,981,237	-				-3.1
2,981,237	-				-2.3
2,981,237	-				-1.1
2,981,237	-				-5.7
2,981,239	+				-3.1
2,981,239	+				-0.7
2,981,240	-				-1.7
2,981,240	-				-2.5
2,981,240	-				-3.0
2,981,240	-				-0.3
2,981,240	-				-3.5
2,981,240	-				-1.7
2,981,240	-				-2.7
2,981,240	-				-1.4
2,981,240	-				-1.3
2,981,240	-				-2.8
2,981,242	+				-2.3
2,981,243	-				+0.7
2,981,245	+				-2.4
2,981,245	+				-0.2
2,981,246	-				-0.7
2,981,246	-				-1.7
2,981,246	-				-1.3
2,981,248	+				+0.3
2,981,260	+				-2.9
2,981,260	+				-1.3
2,981,261	-				-1.3
2,981,261	-				+1.2
2,981,264	+				-3.6
2,981,264	+				-0.4
2,981,264	+				-3.0
2,981,264	+				-3.4
2,981,264	+				-1.3
2,981,265	-				-3.3
2,981,265	-				-4.4
2,981,267	-				-2.8
2,981,281	+				-3.4
2,981,281	+				-4.1
2,981,281	+				-2.1
2,981,281	+				-2.3
2,981,282	-				-5.7
2,981,282	-				+0.3
2,981,282	-				+0.3
2,981,282	-				-0.7
2,981,285	+				-2.8
2,981,286	-				+0.3
2,981,326	+				-2.7
2,981,327	-				-2.7
2,981,327	-				-3.3
2,981,332	+				-3.6
2,981,332	+				-2.7
2,981,357	-				-3.1
2,981,382	+				+1.3
2,981,383	-				+0.3
2,981,383	-				-1.3
2,981,480	-				+1.7
2,981,480	-				+0.3
2,981,480	-				+1.1
2,981,501	+				+0.6
2,981,501	+				+0.5
2,981,501	+				-2.5
2,981,502	-				+0.9
2,981,510	-				-0.3
2,981,510	-				+1.0
2,981,510	-				+0.3
2,981,512	-				+0.1
2,981,512	-				+1.2
2,981,512	-				+0.6
2,981,512	-				-1.2
2,981,512	-				-2.4
2,981,512	-				+0.5
2,981,512	-				-0.7
2,981,512	-				-1.7
2,981,512	-				-0.8
2,981,512	-				-1.7
2,981,514	-				+0.3
2,981,514	-				+0.7
2,981,514	-				-1.4
2,981,514	-				+1.4
2,981,514	-				+0.9
2,981,637	+				-0.3
2,981,637	+				-1.2
2,981,638	-				+1.3
2,981,645	+				+1.1
2,981,702	-				+0.5
2,981,704	+				+0.7
2,981,705	-				+1.7
2,981,740	+				-3.0
2,981,742	+				+0.3
2,981,744	+				+0.5
2,981,744	+				-0.7
2,981,744	+				-0.4
2,981,744	+				-1.7
2,981,744	+				+0.1
2,981,744	+				+0.6
2,981,744	+				+0.7
2,981,744	+				+0.0
2,981,744	+				+0.3
2,981,744	+				+0.0
2,981,749	+				-2.0
2,981,749	+				+0.3
2,981,749	+				-1.0
2,981,749	+				-0.2
2,981,749	+				+0.2
2,981,750	-				+0.9
2,981,750	-				+0.8
2,981,750	-				-1.3
2,981,750	-				+0.8
2,981,750	-				-2.3
2,981,750	-				+0.8
2,981,751	+				-1.5
2,981,751	+				+0.5
2,981,751	+				-1.0
2,981,751	+				-2.5
2,981,751	+				+0.3
2,981,752	-				+1.7
2,981,752	-				+2.8
2,981,752	-				+2.9
2,981,757	-				-0.5
2,981,757	-				-2.8
2,981,757	-				-0.5
2,981,809	+				-0.6
2,981,810	-				-0.3
2,981,810	-				+1.0
2,981,810	-				-0.5
2,981,823	+				-1.3
2,981,824	-				-0.7
2,981,833	+				-1.7
2,981,856	+				-0.7
2,981,856	+				-0.1
2,981,856	+				+1.0
2,981,856	+				+0.8
2,981,856	+				+0.0
2,981,856	+				-2.0
2,981,857	-				-0.4
2,981,857	-				-0.3
2,981,857	-				+0.7
2,981,871	+				+0.1
2,981,871	+				+0.3
2,981,871	+				-0.4
2,981,872	-				-0.5
2,981,872	-				-1.7
2,981,875	+				-0.3
2,981,875	+				+0.5
2,981,875	+				+0.7
2,981,875	+				+2.6
2,981,876	-				+0.7
2,981,876	-				-3.3
2,981,876	-				+0.9
2,981,876	-				-0.3
2,981,876	-				+0.3
2,981,978	+				+0.8
2,981,979	-				-2.0
2,982,000	+				-1.3
2,982,050	+				-0.3
2,982,050	+				-0.5
2,982,067	+				-1.3
2,982,067	+				-0.7
2,982,067	+				+0.4
2,982,067	+				-0.8
2,982,067	+				+0.3
2,982,068	-				-1.7
2,982,087	-				-2.7
2,982,087	-				-2.7
2,982,088	+				-1.3
2,982,088	+				+0.9
2,982,088	+				-0.7
2,982,088	+				-0.8
2,982,089	-				-3.1
2,982,089	-				-1.3
2,982,089	-				-1.7
2,982,089	-				-2.8
2,982,121	-				-0.7
2,982,139	-				-2.1
2,982,139	-				-0.2
2,982,139	-				-2.3
2,982,159	+				-2.7
2,982,160	-				-2.0
2,982,182	+				-2.7
2,982,183	-				-0.7
2,982,183	-				-5.0
2,982,198	+				-2.3
2,982,281	-				-1.7
2,982,281	-				-2.5
2,982,282	+				-2.6
2,982,282	+				-2.4
2,982,282	+				-3.1
2,982,283	-				+0.3
2,982,283	-				-1.7
2,982,448	-		DZA65_RS13875	0.21	-1.3
2,982,466	+		DZA65_RS13875	0.22	-2.7
2,982,466	+		DZA65_RS13875	0.22	-3.6
2,982,466	+		DZA65_RS13875	0.22	-5.2
2,982,466	+		DZA65_RS13875	0.22	-2.0
2,982,467	-		DZA65_RS13875	0.22	-2.3
2,982,483	+		DZA65_RS13875	0.24	-2.8
2,982,484	-		DZA65_RS13875	0.24	-2.0
2,982,522	+		DZA65_RS13875	0.26	-2.5
2,982,545	+		DZA65_RS13875	0.28	-3.6
2,982,579	+		DZA65_RS13875	0.30	-1.0
2,982,580	-		DZA65_RS13875	0.30	-1.3
2,982,580	-		DZA65_RS13875	0.30	-1.8
2,982,585	+		DZA65_RS13875	0.31	-2.5
2,982,586	-		DZA65_RS13875	0.31	-3.4
2,982,664	-		DZA65_RS13875	0.36	-4.7
2,982,664	-		DZA65_RS13875	0.36	-2.8
2,982,664	-		DZA65_RS13875	0.36	-1.8
2,982,664	-		DZA65_RS13875	0.36	-2.5
2,982,664	-		DZA65_RS13875	0.36	-1.3
2,982,664	-		DZA65_RS13875	0.36	-3.0
2,982,666	+		DZA65_RS13875	0.36	-1.0
2,982,666	+		DZA65_RS13875	0.36	-2.5
2,982,666	+		DZA65_RS13875	0.36	-5.5
2,982,666	+		DZA65_RS13875	0.36	-0.7
2,982,666	+		DZA65_RS13875	0.36	-1.7
2,982,667	-		DZA65_RS13875	0.36	-5.6
2,982,667	-		DZA65_RS13875	0.36	-1.4
2,982,669	+		DZA65_RS13875	0.36	-3.7
2,982,717	+		DZA65_RS13875	0.40	-2.7
2,982,890	+		DZA65_RS13875	0.51	-1.8
2,982,890	+				-2.5
2,982,890	+		DZA65_RS13875	0.51	-1.7
2,982,891	-		DZA65_RS13875	0.51	-3.9
2,982,891	-		DZA65_RS13875	0.51	-3.6
2,982,891	-		DZA65_RS13875	0.51	-2.1
2,982,891	-		DZA65_RS13875	0.51	-2.0
2,982,895	-		DZA65_RS13875	0.52	-0.7
2,982,895	-		DZA65_RS13875	0.52	-0.9
2,983,021	+		DZA65_RS13875	0.60	-2.8
2,983,060	+		DZA65_RS13875	0.63	-2.7
2,983,060	+		DZA65_RS13875	0.63	-2.8
2,983,060	+		DZA65_RS13875	0.63	-1.5
2,983,060	+		DZA65_RS13875	0.63	-0.7
2,983,060	+		DZA65_RS13875	0.63	-2.7
2,983,061	-		DZA65_RS13875	0.63	-2.3
2,983,062	+		DZA65_RS13875	0.63	-2.0
2,983,134	+		DZA65_RS13875	0.68	-1.7
2,983,134	+		DZA65_RS13875	0.68	-3.1
2,983,135	-		DZA65_RS13875	0.68	-2.8
2,983,135	-		DZA65_RS13875	0.68	-1.3
2,983,135	-		DZA65_RS13875	0.68	-2.7
2,983,137	+		DZA65_RS13875	0.68	-2.3
2,983,138	-		DZA65_RS13875	0.68	-2.8
2,983,138	-		DZA65_RS13875	0.68	-2.8
2,983,160	+		DZA65_RS13875	0.70	-3.4
2,983,160	+		DZA65_RS13875	0.70	-1.0
2,983,181	+		DZA65_RS13875	0.71	+1.7
2,983,181	+		DZA65_RS13875	0.71	-1.8
2,983,181	+				-3.1
2,983,181	+		DZA65_RS13875	0.71	-0.7
2,983,181	+		DZA65_RS13875	0.71	-2.3
2,983,182	-		DZA65_RS13875	0.71	-2.0
2,983,182	-		DZA65_RS13875	0.71	-2.3
2,983,182	-		DZA65_RS13875	0.71	-3.6
2,983,189	-		DZA65_RS13875	0.72	-2.3
2,983,367	-		DZA65_RS13875	0.84	-3.1
2,983,367	-		DZA65_RS13875	0.84	-2.0
2,983,446	-		DZA65_RS13875	0.89	-0.7
2,983,485	+				-2.5
2,983,485	+				-2.7
2,983,486	-				-1.3
2,983,486	-				-1.7
2,983,512	+				-1.8
2,983,513	-				-2.7
2,983,513	-				-2.3
2,983,525	-				-1.7
2,983,558	+				-4.6
2,983,559	-				-5.2
2,983,559	-				+0.0
2,983,576	-				-1.3
2,983,578	+				+1.3
2,983,579	-				-1.8
2,983,579	-				-0.1
2,983,579	-				-1.5
2,983,597	+				+0.6
2,983,597	+				+0.1
2,983,597	+				-0.7
2,983,601	+				+1.9
2,983,615	+				-1.3
2,983,644	+				+1.0
2,983,656	+				-1.0
2,983,657	-				-3.0
2,983,657	-				-1.0
2,983,659	+				-2.3
2,983,660	-				-2.5
2,983,675	-				-1.3
2,983,707	+				-0.3
2,983,707	+				-0.4
2,983,707	+				-0.7
2,983,707	+				-2.5
2,983,708	-				-1.7
2,983,708	-				-1.3
2,983,708	-				-1.7
2,983,708	-				-2.8
2,983,710	-				-0.7
2,983,732	-				-2.3
2,983,791	-		DZA65_RS13880	0.21	-3.3
2,983,791	-		DZA65_RS13880	0.21	-2.7
2,983,821	-		DZA65_RS13880	0.28	-3.8
2,983,854	-		DZA65_RS13880	0.36	+0.3
2,983,854	-		DZA65_RS13880	0.36	-2.0
2,983,892	+		DZA65_RS13880	0.46	-0.7
2,983,892	+		DZA65_RS13880	0.46	-2.3
2,983,895	+		DZA65_RS13880	0.46	-1.7
2,983,902	-		DZA65_RS13880	0.48	-2.7
2,983,968	+		DZA65_RS13880	0.64	-3.1
2,983,975	-		DZA65_RS13880	0.66	-2.0
2,983,975	-		DZA65_RS13880	0.66	-4.1
2,983,975	-		DZA65_RS13880	0.66	-2.5
2,984,006	+		DZA65_RS13880	0.73	+0.3
2,984,029	+		DZA65_RS13880	0.79	-3.6
2,984,029	+		DZA65_RS13880	0.79	-2.0
2,984,030	-		DZA65_RS13880	0.79	-3.9
2,984,030	-		DZA65_RS13880	0.79	-2.3
2,984,030	-		DZA65_RS13880	0.79	-2.8
2,984,054	+		DZA65_RS13880	0.85	-1.7
2,984,055	-		DZA65_RS13880	0.85	-2.3
2,984,055	-		DZA65_RS13880	0.85	-0.7
2,984,113	-				-2.3
2,984,134	-				-1.3
2,984,137	+				-1.5
2,984,137	+				-2.0
2,984,138	-				-3.1
2,984,174	-		DZA65_RS13885	0.17	-0.7
2,984,226	+		DZA65_RS13885	0.31	-3.3
2,984,226	+		DZA65_RS13885	0.31	-3.5
2,984,226	+		DZA65_RS13885	0.31	-2.3
2,984,226	+		DZA65_RS13885	0.31	-2.3
2,984,227	-		DZA65_RS13885	0.31	-2.5
2,984,231	+		DZA65_RS13885	0.32	-3.5
2,984,231	+		DZA65_RS13885	0.32	-4.4
2,984,231	+		DZA65_RS13885	0.32	-3.3
2,984,231	+		DZA65_RS13885	0.32	-2.0
2,984,231	+		DZA65_RS13885	0.32	-1.7
2,984,232	-		DZA65_RS13885	0.33	-2.8
2,984,232	-		DZA65_RS13885	0.33	-1.7
2,984,299	-		DZA65_RS13885	0.51	-0.7
2,984,325	+		DZA65_RS13885	0.58	-2.3
2,984,325	+		DZA65_RS13885	0.58	+1.5
2,984,325	+		DZA65_RS13885	0.58	-2.8
2,984,325	+		DZA65_RS13885	0.58	-2.3
2,984,326	-		DZA65_RS13885	0.58	-2.0
2,984,326	-		DZA65_RS13885	0.58	-3.5
2,984,326	-		DZA65_RS13885	0.58	-1.3
2,984,326	-		DZA65_RS13885	0.58	-3.5
2,984,429	+		DZA65_RS13885	0.87	+0.5
2,984,429	+		DZA65_RS13885	0.87	-4.5
2,984,429	+		DZA65_RS13885	0.87	+2.3
2,984,429	+		DZA65_RS13885	0.87	-4.0
2,984,429	+		DZA65_RS13885	0.87	-3.4
2,984,430	-		DZA65_RS13885	0.87	-2.8
2,984,430	-		DZA65_RS13885	0.87	-2.0
2,984,430	-		DZA65_RS13885	0.87	-3.2
2,984,430	-		DZA65_RS13885	0.87	-1.7
2,984,430	-		DZA65_RS13885	0.87	-0.4
2,984,430	-		DZA65_RS13885	0.87	-2.1
2,984,430	-		DZA65_RS13885	0.87	-0.9
2,984,449	+				-1.0
2,984,450	-				-1.7
2,984,450	-				+0.7
2,984,451	+				-0.7
2,984,451	+				-0.1
2,984,452	-				-4.0
2,984,452	-				+0.6
2,984,452	-				-1.7
2,984,452	-				-2.8
2,984,494	+				+1.7
2,984,494	+				+0.9
2,984,495	-				+0.8
2,984,539	+				+0.2
2,984,539	+				+0.7
2,984,539	+				+2.1
2,984,539	+				+0.3
2,984,539	+				-2.8
2,984,539	+				-0.6
2,984,539	+				-0.7
2,984,539	+				+0.1
2,984,539	+				-0.3
2,984,539	+				-0.3
2,984,539	+				-0.3
2,984,539	+				-1.7
2,984,539	+				+0.0
2,984,539	+				+0.5
2,984,539	+				+0.2
2,984,540	-				+0.3
2,984,540	-				-1.0
2,984,540	-				+0.7
2,984,540	-				-0.9
2,984,540	-				+0.3
2,984,540	-				+0.9
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