Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11650

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,485,459	-		DZA65_RS11645	0.33	+0.5
2,485,497	+		DZA65_RS11645	0.36	+1.2
2,485,497	+		DZA65_RS11645	0.36	-0.2
2,485,497	+		DZA65_RS11645	0.36	-0.6
2,485,498	-		DZA65_RS11645	0.36	+1.8
2,485,498	-		DZA65_RS11645	0.36	-1.2
2,485,498	-		DZA65_RS11645	0.36	+0.6
2,485,498	-		DZA65_RS11645	0.36	+0.4
2,485,498	-		DZA65_RS11645	0.36	+0.0
2,485,498	-		DZA65_RS11645	0.36	-0.6
2,485,498	-		DZA65_RS11645	0.36	+0.3
2,485,498	-		DZA65_RS11645	0.36	+0.2
2,485,609	-		DZA65_RS11645	0.44	-0.6
2,485,630	+		DZA65_RS11645	0.45	-0.5
2,485,631	-		DZA65_RS11645	0.45	+1.5
2,485,631	-		DZA65_RS11645	0.45	-3.2
2,485,665	+		DZA65_RS11645	0.48	+0.4
2,485,666	-		DZA65_RS11645	0.48	-0.2
2,485,745	+		DZA65_RS11645	0.54	-0.6
2,485,903	+		DZA65_RS11645	0.65	-1.4
2,485,903	+		DZA65_RS11645	0.65	-0.6
2,485,906	+		DZA65_RS11645	0.66	-0.3
2,485,906	+		DZA65_RS11645	0.66	-2.8
2,485,906	+		DZA65_RS11645	0.66	+0.4
2,485,907	-		DZA65_RS11645	0.66	-2.8
2,485,942	+		DZA65_RS11645	0.68	-1.1
2,485,942	+		DZA65_RS11645	0.68	-0.0
2,485,942	+		DZA65_RS11645	0.68	+1.8
2,485,942	+		DZA65_RS11645	0.68	-1.7
2,485,943	-		DZA65_RS11645	0.68	-0.3
2,485,943	-		DZA65_RS11645	0.68	-0.4
2,485,943	-		DZA65_RS11645	0.68	+1.3
2,485,951	+		DZA65_RS11645	0.69	+0.2
2,485,951	+		DZA65_RS11645	0.69	-1.5
2,485,951	+		DZA65_RS11645	0.69	-0.8
2,485,984	+		DZA65_RS11645	0.71	+1.0
2,485,984	+		DZA65_RS11645	0.71	-0.4
2,485,984	+		DZA65_RS11645	0.71	+0.5
2,485,984	+		DZA65_RS11645	0.71	-0.2
2,485,984	+		DZA65_RS11645	0.71	-0.4
2,485,984	+		DZA65_RS11645	0.71	+0.8
2,485,984	+		DZA65_RS11645	0.71	+0.6
2,485,984	+		DZA65_RS11645	0.71	+0.2
2,485,985	-		DZA65_RS11645	0.71	-0.8
2,485,985	-		DZA65_RS11645	0.71	-1.0
2,485,985	-		DZA65_RS11645	0.71	-0.8
2,485,985	-		DZA65_RS11645	0.71	-1.4
2,485,985	-		DZA65_RS11645	0.71	+0.5
2,485,985	-		DZA65_RS11645	0.71	+0.7
2,485,986	+		DZA65_RS11645	0.72	-0.1
2,485,986	+		DZA65_RS11645	0.72	+0.2
2,485,986	+		DZA65_RS11645	0.72	-0.0
2,485,986	+		DZA65_RS11645	0.72	-1.4
2,485,986	+		DZA65_RS11645	0.72	-0.1
2,485,986	+		DZA65_RS11645	0.72	-0.8
2,485,987	-		DZA65_RS11645	0.72	+0.2
2,485,987	-		DZA65_RS11645	0.72	+0.2
2,485,987	-		DZA65_RS11645	0.72	-2.2
2,485,987	-		DZA65_RS11645	0.72	-2.2
2,485,987	-		DZA65_RS11645	0.72	+0.5
2,486,001	+		DZA65_RS11645	0.73	-2.6
2,486,001	+		DZA65_RS11645	0.73	-0.5
2,486,001	+		DZA65_RS11645	0.73	+0.2
2,486,002	-		DZA65_RS11645	0.73	+1.2
2,486,120	+		DZA65_RS11645	0.81	+2.0
2,486,120	+		DZA65_RS11645	0.81	+1.2
2,486,120	+		DZA65_RS11645	0.81	+0.5
2,486,120	+		DZA65_RS11645	0.81	-0.9
2,486,121	-		DZA65_RS11645	0.81	+0.6
2,486,124	+		DZA65_RS11645	0.82	+0.6
2,486,124	+		DZA65_RS11645	0.82	+1.2
2,486,124	+		DZA65_RS11645	0.82	+0.6
2,486,125	-				-1.4
2,486,125	-		DZA65_RS11645	0.82	+0.4
2,486,125	-		DZA65_RS11645	0.82	-1.4
2,486,171	+		DZA65_RS11645	0.85	-1.1
2,486,172	-		DZA65_RS11645	0.85	+1.0
2,486,172	-		DZA65_RS11645	0.85	+0.1
2,486,172	-		DZA65_RS11645	0.85	-0.8
2,486,172	-		DZA65_RS11645	0.85	+1.2
2,486,172	-		DZA65_RS11645	0.85	-2.2
2,486,172	-		DZA65_RS11645	0.85	+0.0
2,486,294	-				+2.4
2,486,323	+				+0.8
2,486,674	+		DZA65_RS11650	0.15	-0.9
2,486,689	+		DZA65_RS11650	0.15	-2.4
2,486,773	+		DZA65_RS11650	0.21	+0.1
2,486,782	+		DZA65_RS11650	0.21	+0.5
2,486,782	+		DZA65_RS11650	0.21	+0.4
2,486,782	+		DZA65_RS11650	0.21	-1.7
2,486,783	-		DZA65_RS11650	0.21	-0.2
2,486,783	-		DZA65_RS11650	0.21	-0.2
2,486,824	+		DZA65_RS11650	0.24	-2.5
2,486,941	+		DZA65_RS11650	0.31	+0.2
2,486,941	+		DZA65_RS11650	0.31	-0.8
2,486,941	+		DZA65_RS11650	0.31	+1.8
2,486,942	-		DZA65_RS11650	0.31	+1.2
2,486,942	-		DZA65_RS11650	0.31	+0.3
2,486,968	+		DZA65_RS11650	0.33	-1.6
2,486,968	+		DZA65_RS11650	0.33	-1.2
2,486,968	+		DZA65_RS11650	0.33	-2.0
2,486,968	+		DZA65_RS11650	0.33	+0.6
2,486,968	+		DZA65_RS11650	0.33	-1.3
2,486,969	-		DZA65_RS11650	0.33	+1.9
2,486,969	-		DZA65_RS11650	0.33	+2.3
2,486,975	-		DZA65_RS11650	0.34	-0.3
2,486,977	+		DZA65_RS11650	0.34	+1.2
2,486,977	+		DZA65_RS11650	0.34	+1.5
2,486,978	-		DZA65_RS11650	0.34	-0.6
2,486,978	-		DZA65_RS11650	0.34	+0.9
2,487,010	+				+0.5
2,487,010	+		DZA65_RS11650	0.36	-0.8
2,487,011	-		DZA65_RS11650	0.36	+0.8
2,487,082	+		DZA65_RS11650	0.40	-0.0
2,487,085	+		DZA65_RS11650	0.41	+0.5
2,487,085	+		DZA65_RS11650	0.41	+1.5
2,487,085	+		DZA65_RS11650	0.41	-1.5
2,487,085	+				-3.2
2,487,085	+		DZA65_RS11650	0.41	+0.2
2,487,094	+		DZA65_RS11650	0.41	-0.4
2,487,101	+		DZA65_RS11650	0.42	+0.2
2,487,154	+		DZA65_RS11650	0.45	-2.2
2,487,176	-		DZA65_RS11650	0.46	-0.4
2,487,227	+		DZA65_RS11650	0.50	+1.4
2,487,280	+		DZA65_RS11650	0.53	-1.5
2,487,281	-		DZA65_RS11650	0.53	-0.6
2,487,281	-		DZA65_RS11650	0.53	+0.8
2,487,281	-		DZA65_RS11650	0.53	+0.2
2,487,299	-		DZA65_RS11650	0.54	-0.8
2,487,367	+		DZA65_RS11650	0.58	+0.2
2,487,484	+		DZA65_RS11650	0.66	-0.8
2,487,484	+		DZA65_RS11650	0.66	-0.5
2,487,636	-		DZA65_RS11650	0.75	+0.8
2,487,636	-		DZA65_RS11650	0.75	-0.2
2,487,636	-		DZA65_RS11650	0.75	+0.2
2,487,636	-		DZA65_RS11650	0.75	-1.4
2,487,669	+		DZA65_RS11650	0.77	-0.8
2,487,669	+		DZA65_RS11650	0.77	-0.1
2,487,670	-		DZA65_RS11650	0.78	-0.6
2,487,670	-		DZA65_RS11650	0.78	-0.1
2,487,670	-		DZA65_RS11650	0.78	-0.3
2,487,734	+		DZA65_RS11650	0.82	+0.9
2,487,735	-		DZA65_RS11650	0.82	-0.0
2,487,735	-		DZA65_RS11650	0.82	-0.8
2,487,766	+		DZA65_RS11650	0.84	-0.8
2,487,817	+		DZA65_RS11650	0.87	+0.9
2,487,817	+		DZA65_RS11650	0.87	-0.5
2,487,817	+		DZA65_RS11650	0.87	-2.0
2,487,818	-		DZA65_RS11650	0.87	-2.6
2,487,821	+		DZA65_RS11650	0.87	+0.2
2,487,821	+		DZA65_RS11650	0.87	+2.2
2,487,821	+		DZA65_RS11650	0.87	-1.8
2,487,822	-		DZA65_RS11650	0.87	-1.4
2,487,827	-		DZA65_RS11650	0.87	-0.5
2,487,827	-		DZA65_RS11650	0.87	-0.2
2,487,885	+				+0.9
2,487,886	-				-0.2
2,487,897	+				+1.8
2,487,897	+				-2.2
2,487,898	-				-0.2
2,487,898	-				+0.4
2,488,006	+				-1.5
2,488,007	-				+0.8
2,488,009	+				-1.1
2,488,009	+				+0.9
2,488,009	+				+0.6
2,488,018	+				-0.2
2,488,018	+				+0.8
2,488,018	+				+0.8
2,488,018	+				+0.9
2,488,018	+				-1.4
2,488,018	+				+0.2
2,488,019	-				-0.4
2,488,019	-				-1.2
2,488,019	-				+0.5
2,488,025	-				-0.8
2,488,041	-				-0.4
2,488,041	-				+0.6
2,488,041	-				+0.5
2,488,043	+				-2.2
2,488,080	+				-0.5
2,488,080	+				-0.4
2,488,080	+				-0.4
2,488,081	-				-0.1
2,488,129	+				-2.4
2,488,130	-				-1.8
2,488,130	-				-1.2
2,488,162	-				+1.7
2,488,173	-				-1.8
2,488,182	+				+1.0
2,488,182	+				-1.2
2,488,224	+				+1.3
2,488,242	+				-1.0
2,488,243	-				-1.8
2,488,243	-				+0.1
2,488,243	-				-0.4
2,488,274	+				+0.7
2,488,390	-				+0.2
2,488,396	+				-0.3
2,488,396	+				+0.6
2,488,396	+				+0.3
2,488,396	+				-2.5
2,488,396	+				-2.2
2,488,396	+				+0.2
2,488,396	+				-0.1
2,488,396	+				-0.3
2,488,397	-				-2.6
2,488,397	-				-0.8
2,488,397	-				+0.2
2,488,397	-				-2.8
2,488,397	-				+3.2
2,488,397	-				-0.5
2,488,397	-				-0.1
2,488,542	+				-0.4
2,488,563	-		DZA65_RS11655	0.11	+0.6
2,488,563	-		DZA65_RS11655	0.11	-2.2
2,488,563	-		DZA65_RS11655	0.11	-0.7
2,488,563	-		DZA65_RS11655	0.11	-2.2
2,488,563	-		DZA65_RS11655	0.11	+0.0
2,488,563	-		DZA65_RS11655	0.11	-1.6
2,488,563	-		DZA65_RS11655	0.11	-2.6
2,488,563	-		DZA65_RS11655	0.11	+0.2
2,488,563	-		DZA65_RS11655	0.11	-1.4
2,488,563	-		DZA65_RS11655	0.11	-1.1
2,488,563	-		DZA65_RS11655	0.11	+0.8
2,488,564	+		DZA65_RS11655	0.11	-1.8
2,488,564	+		DZA65_RS11655	0.11	-0.6
2,488,564	+		DZA65_RS11655	0.11	-0.8
2,488,564	+		DZA65_RS11655	0.11	-1.8
2,488,564	+		DZA65_RS11655	0.11	+0.7
2,488,564	+		DZA65_RS11655	0.11	-1.6
2,488,565	-		DZA65_RS11655	0.11	-1.4
2,488,565	-		DZA65_RS11655	0.11	-1.4
2,488,565	-		DZA65_RS11655	0.11	-1.6
2,488,565	-		DZA65_RS11655	0.11	-0.8
2,488,565	-		DZA65_RS11655	0.11	-1.6
2,488,565	-		DZA65_RS11655	0.11	-0.8
2,488,565	-		DZA65_RS11655	0.11	-2.3
2,488,565	-		DZA65_RS11655	0.11	-2.2
2,488,638	+		DZA65_RS11655	0.16	-0.4
2,488,734	+		DZA65_RS11655	0.22	-2.3
2,488,964	+		DZA65_RS11655	0.37	+0.2
2,488,965	-		DZA65_RS11655	0.37	-0.8
2,488,965	-		DZA65_RS11655	0.37	-2.2