Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11185

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,369,518	+		DZA65_RS11180	0.32	-0.2
2,369,518	+		DZA65_RS11180	0.32	+0.2
2,369,519	-		DZA65_RS11180	0.32	+2.0
2,369,519	-		DZA65_RS11180	0.32	-1.4
2,369,550	+		DZA65_RS11180	0.39	-0.3
2,369,550	+		DZA65_RS11180	0.39	-1.0
2,369,551	-		DZA65_RS11180	0.39	-0.1
2,369,551	-		DZA65_RS11180	0.39	+0.2
2,369,552	+		DZA65_RS11180	0.39	-0.4
2,369,552	+		DZA65_RS11180	0.39	-2.2
2,369,553	-		DZA65_RS11180	0.39	-2.7
2,369,564	+		DZA65_RS11180	0.42	+0.4
2,369,565	-		DZA65_RS11180	0.42	-0.8
2,369,565	-		DZA65_RS11180	0.42	-1.8
2,369,585	+		DZA65_RS11180	0.46	-1.2
2,369,586	-		DZA65_RS11180	0.46	+0.8
2,369,600	+		DZA65_RS11180	0.49	+1.2
2,369,658	+		DZA65_RS11180	0.62	+0.2
2,369,659	-		DZA65_RS11180	0.62	+1.0
2,369,732	+		DZA65_RS11180	0.77	-0.6
2,369,732	+		DZA65_RS11180	0.77	-1.4
2,369,733	-		DZA65_RS11180	0.78	+0.3
2,369,736	+		DZA65_RS11180	0.78	+0.6
2,369,736	+		DZA65_RS11180	0.78	+1.2
2,369,842	+				+0.2
2,369,842	+				+0.3
2,369,843	-				+0.9
2,369,843	-				-0.4
2,369,843	-				-0.8
2,369,885	-		DZA65_RS22885	0.15	+1.2
2,369,903	-		DZA65_RS22885	0.21	+2.5
2,369,944	+		DZA65_RS22885	0.35	+0.6
2,369,945	-		DZA65_RS22885	0.35	-2.0
2,369,945	-		DZA65_RS22885	0.35	-1.3
2,369,982	-		DZA65_RS22885	0.48	+0.2
2,369,984	+		DZA65_RS22885	0.49	+1.0
2,369,984	+		DZA65_RS22885	0.49	-2.2
2,369,984	+		DZA65_RS22885	0.49	+0.6
2,370,001	+		DZA65_RS22885	0.55	+0.6
2,370,001	+		DZA65_RS22885	0.55	-0.4
2,370,001	+		DZA65_RS22885	0.55	+0.2
2,370,001	+		DZA65_RS22885	0.55	-1.4
2,370,002	-		DZA65_RS22885	0.55	-0.2
2,370,002	-		DZA65_RS22885	0.55	-0.6
2,370,002	-		DZA65_RS22885	0.55	+2.2
2,370,002	-		DZA65_RS22885	0.55	-0.3
2,370,002	-		DZA65_RS22885	0.55	-0.3
2,370,031	+		DZA65_RS22885	0.65	+1.2
2,370,046	-		DZA65_RS22885	0.70	-0.8
2,370,046	-		DZA65_RS22885	0.70	-0.2
2,370,129	-				+0.2
2,370,129	-				+0.4
2,370,145	+				+0.2
2,370,145	+				-1.4
2,370,145	+				+1.6
2,370,146	-				+2.4
2,370,146	-				+0.2
2,370,146	-				-1.1
2,370,146	-				+0.6
2,370,151	-				+2.0
2,370,162	+				-0.5
2,370,162	+				+0.2
2,370,176	+				+1.3
2,370,177	-				+0.2
2,370,226	+				+0.9
2,370,238	+				+0.6
2,370,346	-				+0.2
2,370,346	-				-0.2
2,370,400	+				+1.8
2,370,401	-				-0.6
2,370,401	-				+1.9
2,370,411	+				+1.2
2,370,411	+				-0.8
2,370,411	+				-2.2
2,370,411	+				+0.2
2,370,455	-				+0.2
2,370,455	-				-1.9
2,370,456	+				-1.3
2,370,456	+				-0.4
2,370,457	-				-0.8
2,370,461	+				-1.2
2,370,461	+				-0.8
2,370,462	-				-1.8
2,370,462	-				+1.7
2,370,508	+				+0.2
2,370,533	-				+1.2
2,370,587	+				+1.3
2,370,588	-				-0.2
2,370,602	+				+1.2
2,370,603	-				-0.2
2,370,603	-				+0.1
2,370,619	+		DZA65_RS11185	0.11	+0.2
2,370,861	-		DZA65_RS11185	0.35	+0.1
2,370,984	-		DZA65_RS11185	0.47	+1.3
2,371,019	-		DZA65_RS11185	0.50	+0.4
2,371,123	+		DZA65_RS11185	0.61	-0.8
2,371,124	-		DZA65_RS11185	0.61	+0.5
2,371,177	-		DZA65_RS11185	0.66	+0.5
2,371,398	+		DZA65_RS11185	0.88	+0.2
2,371,448	+				+1.4
2,371,449	-				-0.4
2,371,449	-				+0.9
2,371,450	+				+0.2
2,371,450	+				-1.4
2,371,451	-				+1.3
2,371,496	+				+1.1
2,371,500	+				+0.7
2,371,584	+				+0.7
2,371,584	+				-1.7
2,371,589	-				+0.5
2,371,633	-				-0.8
2,371,707	+				+0.4
2,371,707	+				+0.5
2,371,708	-				-0.3
2,371,709	+				+0.4
2,371,772	+				-0.6
2,371,773	-				+0.7
2,371,812	-				+0.7
2,371,812	-				-1.2
2,371,814	-				+0.7
2,371,972	+				+0.4
2,371,979	+				-1.7
2,371,979	+				+0.6
2,371,987	-				+0.6
2,372,054	+				+2.3
2,372,054	+				-3.4
2,372,054	+				+0.5
2,372,055	-				-1.4
2,372,068	+				+0.8
2,372,068	+				-2.4
2,372,069	-				-3.3
2,372,072	+				+0.3
2,372,072	+				-0.8
2,372,072	+				-2.4
2,372,072	+				-1.8
2,372,072	+				+1.2
2,372,072	+				-0.3
2,372,072	+				-1.4
2,372,072	+				-0.4
2,372,072	+				-1.3
2,372,072	+				+0.4
2,372,072	+				+2.2
2,372,072	+				+0.0
2,372,073	-				+0.5
2,372,073	-				+0.2
2,372,073	-				-0.2
2,372,073	-				+1.3
2,372,073	-				-1.2
2,372,073	-				+0.2
2,372,073	-				+0.4
2,372,073	-				-0.0
2,372,073	-				-0.4
2,372,073	-				+0.3
2,372,073	-				+0.1
2,372,073	-				+1.7
2,372,074	+				-1.4
2,372,074	+				-0.8
2,372,074	+				+0.3
2,372,074	+				-0.1
2,372,074	+				-1.4
2,372,075	-				-1.8
2,372,075	-				-0.8
2,372,075	-				-2.2
2,372,075	-				-1.8
2,372,075	-				+0.2
2,372,075	-				-1.8
2,372,075	-				+1.3
2,372,080	+				+1.7
2,372,080	+				+0.2
2,372,081	-				+1.2
2,372,081	-				+0.2
2,372,081	-				+0.3
2,372,081	-				+1.4
2,372,081	-				+0.5
2,372,081	-				-0.3
2,372,082	+				-0.6
2,372,083	-				-0.1
2,372,133	+				-0.6
2,372,134	-				-1.3
2,372,134	-				-0.5
2,372,134	-				+0.3
2,372,165	-				-0.8
2,372,170	+				+1.2
2,372,170	+				+0.7
2,372,171	-				-1.1
2,372,174	+				+0.2
2,372,175	-				-0.3
2,372,175	-				-3.2
2,372,242	+				+2.2
2,372,252	+				-1.0
2,372,252	+				+0.8
2,372,252	+				+0.8
2,372,267	+				-0.1
2,372,267	+				-0.2
2,372,267	+				-1.2
2,372,267	+				-0.3
2,372,268	-				-1.1
2,372,268	-				-1.2
2,372,268	-				+0.5
2,372,298	+				+1.2
2,372,331	+		DZA65_RS11195	0.13	-0.4