Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08500

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,790,270	+				+0.2
1,790,270	+				-0.7
1,790,310	+				-1.2
1,790,310	+				+1.7
1,790,310	+				-0.4
1,790,310	+				-0.5
1,790,310	+				-1.3
1,790,310	+				-0.1
1,790,310	+				+0.3
1,790,310	+				-0.7
1,790,311	-				-2.5
1,790,311	-				+0.5
1,790,311	-				+0.6
1,790,311	-				-0.7
1,790,411	+		DZA65_RS08490	0.33	+0.7
1,790,411	+		DZA65_RS08490	0.33	+0.3
1,790,411	+		DZA65_RS08490	0.33	+1.5
1,790,411	+		DZA65_RS08490	0.33	-2.2
1,790,412	-		DZA65_RS08490	0.34	-2.3
1,790,412	-		DZA65_RS08490	0.34	-0.4
1,790,455	+		DZA65_RS08490	0.47	-0.4
1,790,455	+		DZA65_RS08490	0.47	-0.1
1,790,456	-		DZA65_RS08490	0.48	+1.6
1,790,652	+				-0.0
1,790,667	+		DZA65_RS08495	0.13	-0.9
1,790,668	-		DZA65_RS08495	0.13	-1.1
1,790,668	-		DZA65_RS08495	0.13	+0.3
1,790,668	-		DZA65_RS08495	0.13	+0.5
1,790,668	-		DZA65_RS08495	0.13	+0.9
1,790,731	+		DZA65_RS08495	0.28	-0.6
1,790,732	-		DZA65_RS08495	0.28	-0.5
1,790,808	+		DZA65_RS08495	0.46	+0.0
1,790,808	+		DZA65_RS08495	0.46	+0.0
1,790,808	+		DZA65_RS08495	0.46	-1.4
1,790,808	+		DZA65_RS08495	0.46	+0.3
1,790,808	+		DZA65_RS08495	0.46	+0.6
1,790,808	+		DZA65_RS08495	0.46	+0.3
1,790,808	+		DZA65_RS08495	0.46	+1.0
1,790,808	+		DZA65_RS08495	0.46	-0.7
1,790,808	+		DZA65_RS08495	0.46	+0.5
1,790,808	+		DZA65_RS08495	0.46	+0.3
1,790,808	+		DZA65_RS08495	0.46	+0.6
1,790,808	+		DZA65_RS08495	0.46	+1.5
1,790,808	+		DZA65_RS08495	0.46	-0.9
1,790,809	-		DZA65_RS08495	0.46	+2.5
1,790,809	-		DZA65_RS08495	0.46	-0.2
1,790,809	-		DZA65_RS08495	0.46	+0.7
1,790,809	-		DZA65_RS08495	0.46	+0.2
1,790,809	-		DZA65_RS08495	0.46	-1.7
1,790,809	-		DZA65_RS08495	0.46	-0.7
1,790,809	-		DZA65_RS08495	0.46	+0.9
1,790,809	-		DZA65_RS08495	0.46	+0.1
1,790,833	-		DZA65_RS08495	0.52	-1.0
1,790,899	-		DZA65_RS08495	0.68	-0.7
1,790,967	+		DZA65_RS08495	0.84	+0.5
1,790,968	-		DZA65_RS08495	0.84	+0.3
1,790,974	+		DZA65_RS08495	0.85	+1.8
1,790,974	+		DZA65_RS08495	0.85	-1.9
1,790,974	+		DZA65_RS08495	0.85	+1.9
1,790,975	-		DZA65_RS08495	0.85	+1.5
1,790,975	-		DZA65_RS08495	0.85	+1.1
1,791,009	+				-0.4
1,791,010	-				-0.7
1,791,010	-				-0.1
1,791,012	+				+1.2
1,791,012	+				+0.7
1,791,023	+				-0.4
1,791,023	+				+0.5
1,791,023	+				-0.1
1,791,023	+				-1.7
1,791,023	+				-2.3
1,791,024	-				-0.1
1,791,024	-				+0.3
1,791,032	+				-0.4
1,791,033	-				+0.9
1,791,033	-				-0.7
1,791,034	+				+0.6
1,791,035	-				-0.3
1,791,044	-				+0.3
1,791,044	-				+0.1
1,791,066	+				-0.8
1,791,066	+				-0.3
1,791,066	+				+0.1
1,791,066	+				-0.9
1,791,066	+				-0.2
1,791,066	+				-2.0
1,791,067	-				+0.3
1,791,067	-				-0.7
1,791,067	-				+0.1
1,791,067	-				-1.3
1,791,067	-				+1.1
1,791,067	-				-1.7
1,791,069	+				-0.3
1,791,069	+				-0.2
1,791,069	+				-2.9
1,791,069	+				-0.1
1,791,069	+				+0.8
1,791,069	+				+1.0
1,791,069	+				-2.0
1,791,069	+				-1.7
1,791,069	+				+1.0
1,791,070	-				-0.8
1,791,070	-				+0.2
1,791,070	-				-1.3
1,791,070	-				+0.1
1,791,070	-				-0.7
1,791,070	-				+1.7
1,791,070	-				+0.3
1,791,070	-				+0.4
1,791,075	-				-0.7
1,791,090	+				-0.9
1,791,090	+				+0.0
1,791,090	+				+1.4
1,791,090	+				+0.4
1,791,090	+				-1.4
1,791,091	-				-1.0
1,791,091	-				+0.9
1,791,091	-				+0.9
1,791,106	+				-0.2
1,791,106	+				-0.8
1,791,106	+				-2.0
1,791,106	+				-0.1
1,791,107	-				+0.4
1,791,107	-				-0.4
1,791,107	-				+0.5
1,791,120	-				+0.6
1,791,147	-				+0.7
1,791,148	+				+0.9
1,791,148	+				+1.0
1,791,148	+				-1.7
1,791,148	+				+0.1
1,791,200	-				+1.3
1,791,200	-				+0.3
1,791,363	+				+1.0
1,791,433	+		DZA65_RS08500	0.13	-2.0
1,791,433	+		DZA65_RS08500	0.13	-2.3
1,791,515	+				-1.3
1,791,515	+		DZA65_RS08500	0.19	-0.4
1,791,515	+		DZA65_RS08500	0.19	-1.5
1,791,545	-		DZA65_RS08500	0.21	+2.1
1,791,545	-		DZA65_RS08500	0.21	-0.3
1,791,545	-		DZA65_RS08500	0.21	+0.1
1,791,622	+		DZA65_RS08500	0.27	-0.4
1,791,622	+		DZA65_RS08500	0.27	-0.3
1,791,622	+		DZA65_RS08500	0.27	-1.3
1,791,622	+		DZA65_RS08500	0.27	-1.4
1,791,622	+		DZA65_RS08500	0.27	+0.6
1,791,622	+		DZA65_RS08500	0.27	-0.5
1,791,622	+		DZA65_RS08500	0.27	-0.7
1,791,622	+		DZA65_RS08500	0.27	+0.9
1,791,623	-				+1.5
1,791,623	-		DZA65_RS08500	0.27	-0.3
1,791,623	-		DZA65_RS08500	0.27	+0.9
1,791,623	-		DZA65_RS08500	0.27	+1.3
1,791,623	-		DZA65_RS08500	0.27	+0.3
1,791,623	-		DZA65_RS08500	0.27	-1.0
1,791,623	-		DZA65_RS08500	0.27	-2.0
1,791,623	-		DZA65_RS08500	0.27	-2.0
1,791,623	-		DZA65_RS08500	0.27	-0.0
1,791,735	+		DZA65_RS08500	0.36	-0.9
1,791,736	-		DZA65_RS08500	0.36	-1.3
1,791,736	-		DZA65_RS08500	0.36	-0.2
1,791,736	-		DZA65_RS08500	0.36	-0.9
1,791,980	+		DZA65_RS08500	0.54	-0.7
1,791,980	+		DZA65_RS08500	0.54	-1.3
1,792,007	+		DZA65_RS08500	0.56	+0.1
1,792,008	-		DZA65_RS08500	0.56	-1.2
1,792,141	+		DZA65_RS08500	0.67	+0.4
1,792,228	+				-0.7
1,792,229	-		DZA65_RS08500	0.73	-0.2
1,792,441	+		DZA65_RS08500	0.90	-1.9
1,792,442	-		DZA65_RS08500	0.90	-1.3
1,792,454	+				-0.3
1,792,556	+				-2.9
1,792,556	+				+1.1
1,792,556	+				+2.4
1,792,556	+				+0.6
1,792,557	-				-1.7
1,792,557	-				+0.7
1,792,591	+				+1.6
1,792,591	+				-1.3
1,792,596	+				-1.5
1,792,596	+				+1.5
1,792,596	+				+0.3
1,792,618	+				+0.8
1,792,619	-				-0.1
1,792,649	+				-0.3
1,792,650	-				-0.7
1,792,678	+				+0.3
1,792,679	-				+0.5
1,792,693	+				+1.4
1,792,700	+				-0.9
1,792,700	+				-2.3
1,792,701	-				+0.3
1,792,845	+		DZA65_RS08505	0.27	-0.6
1,792,845	+		DZA65_RS08505	0.27	-0.4
1,792,845	+		DZA65_RS08505	0.27	+1.6
1,792,845	+		DZA65_RS08505	0.27	-1.5
1,792,846	-		DZA65_RS08505	0.27	-2.3
1,792,846	-		DZA65_RS08505	0.27	-0.0
1,792,846	-		DZA65_RS08505	0.27	-0.1
1,792,846	-		DZA65_RS08505	0.27	+0.5
1,792,846	-		DZA65_RS08505	0.27	-2.3
1,792,864	+		DZA65_RS08505	0.30	-0.4
1,792,865	-		DZA65_RS08505	0.30	-1.0
1,792,865	-		DZA65_RS08505	0.30	+0.5
1,792,943	+		DZA65_RS08505	0.39	+0.7
1,792,943	+		DZA65_RS08505	0.39	-1.9
1,792,943	+		DZA65_RS08505	0.39	+1.9
1,792,943	+		DZA65_RS08505	0.39	+0.7
1,792,944	-		DZA65_RS08505	0.40	+1.6
1,792,944	-		DZA65_RS08505	0.40	+0.4
1,792,999	-		DZA65_RS08505	0.46	-0.7
1,793,010	+		DZA65_RS08505	0.48	-0.7
1,793,010	+		DZA65_RS08505	0.48	-0.7
1,793,010	+		DZA65_RS08505	0.48	-0.2
1,793,010	+		DZA65_RS08505	0.48	-2.3
1,793,010	+		DZA65_RS08505	0.48	-3.0
1,793,096	+		DZA65_RS08505	0.58	-0.0
1,793,096	+		DZA65_RS08505	0.58	+1.6
1,793,097	-		DZA65_RS08505	0.58	-1.7
1,793,097	-		DZA65_RS08505	0.58	-0.7
1,793,111	-		DZA65_RS08505	0.60	+2.3
1,793,201	-		DZA65_RS08505	0.71	-0.7
1,793,204	+		DZA65_RS08505	0.72	-1.0
1,793,205	-		DZA65_RS08505	0.72	-2.3
1,793,212	+		DZA65_RS08505	0.73	+0.3
1,793,213	-		DZA65_RS08505	0.73	-0.7
1,793,253	-		DZA65_RS08505	0.78	-0.9
1,793,384	+				+1.9
1,793,384	+				-0.7
1,793,384	+				-0.4
1,793,431	+				+0.5
1,793,434	+				+0.0
1,793,434	+				-1.7
1,793,434	+				-0.3
1,793,434	+				+1.5
1,793,434	+				+1.5
1,793,435	-				-1.3
1,793,435	-				+0.9
1,793,435	-				-1.3
1,793,435	-				+0.4
1,793,435	-				-2.0
1,793,457	+				-1.2
1,793,457	+				+0.1
1,793,457	+				-0.2
1,793,458	-				+0.3
1,793,515	+				-1.3
1,793,515	+				+0.3
1,793,515	+				+1.1
1,793,515	+				+1.1
1,793,515	+				+0.3
1,793,515	+				-1.3
1,793,515	+				-1.3
1,793,515	+				+0.6
1,793,515	+				-0.2
1,793,515	+				-1.9
1,793,515	+				+0.3
1,793,515	+				+1.0
1,793,516	-				-0.8
1,793,516	-				-0.4
1,793,516	-				-1.3
1,793,516	-				+2.1
1,793,516	-				-0.7
1,793,516	-				-2.3