Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08195

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,713,378	+		DZA65_RS08190	0.22	-0.3
1,713,379	-		DZA65_RS08190	0.22	+0.1
1,713,559	+		DZA65_RS08190	0.39	-1.3
1,713,560	-		DZA65_RS08190	0.39	-1.9
1,713,979	+		DZA65_RS08190	0.80	-2.7
1,713,979	+		DZA65_RS08190	0.80	-2.0
1,713,980	-				-0.5
1,714,004	+		DZA65_RS08190	0.83	-0.4
1,714,004	+		DZA65_RS08190	0.83	+0.2
1,714,007	+		DZA65_RS08190	0.83	-0.3
1,714,007	+		DZA65_RS08190	0.83	-0.8
1,714,007	+		DZA65_RS08190	0.83	-1.3
1,714,008	-		DZA65_RS08190	0.83	-0.7
1,714,013	+		DZA65_RS08190	0.83	+0.4
1,714,014	-		DZA65_RS08190	0.84	-2.7
1,714,289	+				+0.8
1,714,289	+				-0.7
1,714,289	+				-0.4
1,714,289	+				-0.9
1,714,290	-				-0.7
1,714,309	+				-0.0
1,714,309	+				+1.5
1,714,309	+				-0.7
1,714,395	+				-0.0
1,714,395	+				-1.3
1,714,396	-				+0.4
1,714,396	-				-0.2
1,714,400	+				-0.3
1,714,400	+				-0.5
1,714,401	-				-0.5
1,714,639	+		DZA65_RS08195	0.15	+0.6
1,714,640	-		DZA65_RS08195	0.15	-0.9
1,714,640	-		DZA65_RS08195	0.15	+0.6
1,714,640	-		DZA65_RS08195	0.15	-0.1
1,714,695	+		DZA65_RS08195	0.18	-1.0
1,714,720	+		DZA65_RS08195	0.19	+0.4
1,714,901	+		DZA65_RS08195	0.27	+2.0
1,714,965	+		DZA65_RS08195	0.30	+0.5
1,714,965	+		DZA65_RS08195	0.30	-0.1
1,714,966	-		DZA65_RS08195	0.30	-0.3
1,714,966	-		DZA65_RS08195	0.30	+1.1
1,714,966	-		DZA65_RS08195	0.30	+1.3
1,714,966	-		DZA65_RS08195	0.30	+1.8
1,714,966	-		DZA65_RS08195	0.30	+1.1
1,714,966	-		DZA65_RS08195	0.30	-1.3
1,715,048	+		DZA65_RS08195	0.34	+0.4
1,715,048	+		DZA65_RS08195	0.34	+2.3
1,715,048	+		DZA65_RS08195	0.34	+1.9
1,715,049	-		DZA65_RS08195	0.34	-0.2
1,715,092	+		DZA65_RS08195	0.36	-0.7
1,715,105	+		DZA65_RS08195	0.37	+2.1
1,715,106	-		DZA65_RS08195	0.37	+0.3
1,715,106	-		DZA65_RS08195	0.37	-3.1
1,715,106	-		DZA65_RS08195	0.37	-0.7
1,715,106	-		DZA65_RS08195	0.37	-0.1
1,715,235	-		DZA65_RS08195	0.43	-0.7
1,715,235	-		DZA65_RS08195	0.43	+0.3
1,715,235	-		DZA65_RS08195	0.43	+0.3
1,715,239	+		DZA65_RS08195	0.43	+0.6
1,715,239	+		DZA65_RS08195	0.43	-0.4
1,715,240	-		DZA65_RS08195	0.43	+0.3
1,715,240	-		DZA65_RS08195	0.43	+0.3
1,715,305	+		DZA65_RS08195	0.46	-0.0
1,715,366	+		DZA65_RS08195	0.49	-0.4
1,715,366	+		DZA65_RS08195	0.49	+0.2
1,715,366	+		DZA65_RS08195	0.49	+0.5
1,715,366	+		DZA65_RS08195	0.49	+0.3
1,715,366	+		DZA65_RS08195	0.49	-0.0
1,715,366	+		DZA65_RS08195	0.49	-0.7
1,715,366	+		DZA65_RS08195	0.49	+2.1
1,715,366	+		DZA65_RS08195	0.49	-2.3
1,715,366	+		DZA65_RS08195	0.49	-0.6
1,715,366	+		DZA65_RS08195	0.49	+0.2
1,715,367	-		DZA65_RS08195	0.49	+1.9
1,715,367	-		DZA65_RS08195	0.49	-0.4
1,715,370	+		DZA65_RS08195	0.49	+0.2
1,715,370	+		DZA65_RS08195	0.49	-0.7
1,715,370	+		DZA65_RS08195	0.49	-0.7
1,715,370	+		DZA65_RS08195	0.49	-1.3
1,715,370	+		DZA65_RS08195	0.49	-1.1
1,715,371	-		DZA65_RS08195	0.49	+0.3
1,715,371	-		DZA65_RS08195	0.49	-2.3
1,715,371	-		DZA65_RS08195	0.49	+1.1
1,715,371	-		DZA65_RS08195	0.49	-1.7
1,715,552	+		DZA65_RS08195	0.58	-1.4
1,715,553	-		DZA65_RS08195	0.58	-1.3
1,715,553	-		DZA65_RS08195	0.58	-3.3
1,715,637	-				-1.3
1,715,802	-		DZA65_RS08195	0.69	+0.6
1,715,869	+		DZA65_RS08195	0.73	+1.3
1,715,888	+		DZA65_RS08195	0.74	+0.3
1,715,888	+		DZA65_RS08195	0.74	-0.9
1,715,889	-		DZA65_RS08195	0.74	-0.2
1,715,889	-		DZA65_RS08195	0.74	-0.7
1,716,059	+		DZA65_RS08195	0.82	+0.8
1,716,059	+		DZA65_RS08195	0.82	+1.2
1,716,060	-		DZA65_RS08195	0.82	+2.1
1,716,060	-		DZA65_RS08195	0.82	+1.5
1,716,060	-		DZA65_RS08195	0.82	+0.6
1,716,060	-				-1.0
1,716,060	-		DZA65_RS08195	0.82	-0.7
1,716,212	+		DZA65_RS08195	0.89	-0.8
1,716,362	+				-0.9
1,716,362	+				-0.5
1,716,363	-				+1.2
1,716,363	-				+0.6
1,716,363	-				-2.3
1,716,363	-				-0.5
1,716,364	+				+0.2
1,716,364	+				+2.1
1,716,365	-				-0.6
1,716,365	-				-0.6
1,716,449	+				-0.3
1,716,449	+				-0.3
1,716,449	+				-1.0
1,716,450	-				+0.5
1,716,450	-				-0.3
1,716,492	+				-1.3
1,716,492	+				-1.7
1,716,493	-				-0.6
1,716,498	+				-0.3
1,716,498	+				+0.3
1,716,499	-				-1.6
1,716,499	-				-0.9
1,716,499	-				+0.3
1,716,502	+				+0.3
1,716,502	+				+0.7
1,716,502	+				+0.9
1,716,502	+				-0.1
1,716,502	+				-0.1
1,716,502	+				-0.8
1,716,502	+				+2.6
1,716,502	+				+0.8
1,716,502	+				-0.7
1,716,502	+				-3.3
1,716,502	+				-0.7
1,716,502	+				-0.2
1,716,502	+				+0.8
1,716,502	+				+0.3
1,716,502	+				-0.9
1,716,502	+				-1.3
1,716,502	+				+0.0
1,716,502	+				+0.1
1,716,502	+				+0.7
1,716,502	+				-1.7
1,716,502	+				+1.2
1,716,502	+				-0.5
1,716,502	+				+0.6
1,716,502	+				-1.3
1,716,502	+				+0.5
1,716,502	+				+1.4
1,716,502	+				-0.2
1,716,502	+				-1.6
1,716,502	+				-3.0
1,716,502	+				+0.2
1,716,502	+				+0.8
1,716,502	+				+1.5
1,716,502	+				+3.1
1,716,503	-				-0.2
1,716,503	-				+0.1
1,716,503	-				-2.1
1,716,503	-				+0.1
1,716,503	-				-0.7
1,716,503	-				+0.2
1,716,503	-				+0.3
1,716,503	-				-1.9
1,716,503	-				-0.4
1,716,503	-				-0.3
1,716,503	-				-0.1
1,716,503	-				-0.9
1,716,503	-				-0.4
1,716,503	-				-2.3
1,716,503	-				+0.9
1,716,503	-				-1.7
1,716,503	-				+0.5
1,716,503	-				+2.2
1,716,503	-				-1.1
1,716,503	-				+0.6
1,716,503	-				-2.0
1,716,503	-				-0.1
1,716,503	-				-0.9
1,716,503	-				+0.3
1,716,503	-				-0.2
1,716,503	-				-0.3
1,716,503	-				+0.6
1,716,503	-				-0.7
1,716,503	-				+1.9
1,716,503	-				+0.3
1,716,503	-				-2.5
1,716,503	-				-1.4
1,716,503	-				+0.3
1,716,503	-				-2.3
1,716,503	-				-1.1
1,716,503	-				+0.6
1,716,503	-				-0.4
1,716,503	-				+1.3
1,716,503	-				-1.7
1,716,503	-				-0.3
1,716,504	+				+0.9
1,716,504	+				-0.5
1,716,504	+				-0.1
1,716,504	+				-0.0
1,716,504	+				-2.0
1,716,505	-				+0.3
1,716,505	-				-0.6
1,716,505	-				-0.3
1,716,527	+				-1.1
1,716,528	-				-0.1
1,716,543	+				+0.7
1,716,543	+				+0.4
1,716,543	+				+0.9
1,716,544	-				+1.6
1,716,549	+				-2.0
1,716,549	+				-1.7
1,716,549	+				+0.8
1,716,549	+				-0.2
1,716,550	-				+1.0
1,716,556	-				-1.3
1,716,589	+				+0.9
1,716,657	+		DZA65_RS08200	0.12	-1.7
1,716,811	+		DZA65_RS08200	0.24	-2.3
1,716,811	+		DZA65_RS08200	0.24	+2.3
1,716,812	-		DZA65_RS08200	0.24	-1.7
1,716,840	+		DZA65_RS08200	0.26	-0.7
1,716,841	-		DZA65_RS08200	0.26	-0.3
1,716,841	-		DZA65_RS08200	0.26	-2.5
1,716,841	-		DZA65_RS08200	0.26	-0.1
1,716,841	-		DZA65_RS08200	0.26	+0.3
1,716,841	-		DZA65_RS08200	0.26	+0.7
1,716,871	+		DZA65_RS08200	0.29	-0.0
1,716,871	+		DZA65_RS08200	0.29	+0.9
1,716,916	+		DZA65_RS08200	0.32	+0.6
1,716,916	+		DZA65_RS08200	0.32	+0.9
1,716,916	+		DZA65_RS08200	0.32	+0.4
1,716,916	+		DZA65_RS08200	0.32	-1.7
1,716,916	+		DZA65_RS08200	0.32	+1.1
1,716,916	+		DZA65_RS08200	0.32	-1.9
1,716,916	+		DZA65_RS08200	0.32	-1.1
1,716,917	-		DZA65_RS08200	0.32	-0.0
1,716,917	-		DZA65_RS08200	0.32	+1.0
1,716,992	+		DZA65_RS08200	0.38	+1.5
1,717,020	+		DZA65_RS08200	0.40	-0.7
1,717,073	+		DZA65_RS08200	0.44	-0.7
1,717,074	-		DZA65_RS08200	0.44	+1.0
1,717,216	+		DZA65_RS08200	0.56	+1.1
1,717,216	+		DZA65_RS08200	0.56	-0.9
1,717,216	+		DZA65_RS08200	0.56	-1.5
1,717,216	+		DZA65_RS08200	0.56	-3.6
1,717,216	+		DZA65_RS08200	0.56	+1.6
1,717,217	-				+1.3
1,717,217	-		DZA65_RS08200	0.56	-0.5
1,717,240	+		DZA65_RS08200	0.57	-0.5
1,717,240	+		DZA65_RS08200	0.57	+0.3
1,717,240	+		DZA65_RS08200	0.57	-0.3
1,717,240	+		DZA65_RS08200	0.57	-0.3
1,717,241	-		DZA65_RS08200	0.57	-1.0
1,717,241	-		DZA65_RS08200	0.57	+0.7
1,717,241	-		DZA65_RS08200	0.57	+1.0
1,717,241	-		DZA65_RS08200	0.57	+0.7
1,717,241	-		DZA65_RS08200	0.57	+0.9
1,717,241	-		DZA65_RS08200	0.57	-0.4
1,717,241	-		DZA65_RS08200	0.57	+1.3
1,717,276	-		DZA65_RS08200	0.60	+0.6
1,717,276	-		DZA65_RS08200	0.60	+1.5
1,717,390	-		DZA65_RS08200	0.69	-1.3
1,717,428	+		DZA65_RS08200	0.72	+0.7
1,717,428	+		DZA65_RS08200	0.72	-2.1
1,717,429	-		DZA65_RS08200	0.72	+1.6