Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06325

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,317,088	+				-0.7
1,317,088	+				+0.9
1,317,088	+				+0.3
1,317,088	+				+1.1
1,317,088	+				-0.1
1,317,089	-				+0.8
1,317,089	-				-0.3
1,317,089	-				+0.5
1,317,089	-				-0.3
1,317,089	-				+1.3
1,317,089	-				+0.1
1,317,089	-				-1.5
1,317,127	+				-0.6
1,317,127	+				+0.7
1,317,127	+				-0.3
1,317,128	-				-1.1
1,317,128	-				+0.6
1,317,131	+				+0.6
1,317,131	+				+0.7
1,317,131	+				+0.5
1,317,132	-				-0.7
1,317,132	-				-1.1
1,317,132	-				-1.1
1,317,158	+				+2.6
1,317,158	+				-1.1
1,317,171	-				+0.3
1,317,199	+				+2.2
1,317,199	+				-1.6
1,317,200	-				+0.1
1,317,200	-				-0.1
1,317,200	-				+1.3
1,317,216	+				+2.1
1,317,216	+				+2.0
1,317,217	-				-0.9
1,317,217	-				-0.5
1,317,218	+				-1.8
1,317,218	+				-0.8
1,317,218	+				+0.5
1,317,218	+				-0.8
1,317,218	+				-2.5
1,317,219	-				+0.1
1,317,219	-				+0.5
1,317,219	-				-1.5
1,317,219	-				+2.9
1,317,238	-				+0.3
1,317,291	+		DZA65_RS06320	0.12	-1.5
1,317,291	+		DZA65_RS06320	0.12	-0.9
1,317,292	-		DZA65_RS06320	0.13	-2.1
1,317,316	+		DZA65_RS06320	0.17	+0.3
1,317,369	+		DZA65_RS06320	0.27	-1.5
1,317,409	+		DZA65_RS06320	0.34	+1.7
1,317,410	-		DZA65_RS06320	0.34	+0.2
1,317,410	-		DZA65_RS06320	0.34	+1.3
1,317,410	-		DZA65_RS06320	0.34	-2.3
1,317,427	+		DZA65_RS06320	0.37	-2.1
1,317,427	+		DZA65_RS06320	0.37	-1.0
1,317,428	-		DZA65_RS06320	0.38	+0.5
1,317,428	-		DZA65_RS06320	0.38	-0.4
1,317,478	+		DZA65_RS06320	0.47	-0.5
1,317,479	-		DZA65_RS06320	0.47	-0.5
1,317,498	+		DZA65_RS06320	0.50	-0.7
1,317,498	+		DZA65_RS06320	0.50	+0.8
1,317,498	+		DZA65_RS06320	0.50	+0.9
1,317,499	-		DZA65_RS06320	0.51	-1.6
1,317,509	-		DZA65_RS06320	0.52	-0.8
1,317,509	-		DZA65_RS06320	0.52	+0.5
1,317,566	-		DZA65_RS06320	0.63	-0.5
1,317,577	+		DZA65_RS06320	0.65	+0.9
1,317,577	+		DZA65_RS06320	0.65	+0.5
1,317,577	+		DZA65_RS06320	0.65	+1.0
1,317,578	-		DZA65_RS06320	0.65	-0.1
1,317,578	-		DZA65_RS06320	0.65	+0.2
1,317,578	-		DZA65_RS06320	0.65	-0.6
1,317,578	-		DZA65_RS06320	0.65	-0.9
1,317,578	-		DZA65_RS06320	0.65	+0.8
1,317,580	+		DZA65_RS06320	0.65	-0.5
1,317,581	-		DZA65_RS06320	0.66	+0.7
1,317,616	+		DZA65_RS06320	0.72	+0.5
1,317,617	-		DZA65_RS06320	0.72	-0.0
1,317,617	-		DZA65_RS06320	0.72	+0.1
1,317,617	-		DZA65_RS06320	0.72	-2.6
1,317,617	-		DZA65_RS06320	0.72	-0.0
1,317,617	-		DZA65_RS06320	0.72	-0.8
1,317,685	+		DZA65_RS06320	0.85	+0.5
1,317,685	+		DZA65_RS06320	0.85	+0.1
1,317,685	+		DZA65_RS06320	0.85	+0.5
1,317,685	+		DZA65_RS06320	0.85	-0.1
1,317,685	+		DZA65_RS06320	0.85	-0.7
1,317,685	+		DZA65_RS06320	0.85	-1.1
1,317,685	+		DZA65_RS06320	0.85	-0.8
1,317,685	+		DZA65_RS06320	0.85	+0.3
1,317,686	-		DZA65_RS06320	0.85	-0.1
1,317,686	-		DZA65_RS06320	0.85	+0.0
1,317,686	-		DZA65_RS06320	0.85	+0.0
1,317,686	-		DZA65_RS06320	0.85	-0.5
1,317,687	+		DZA65_RS06320	0.85	-2.8
1,317,687	+		DZA65_RS06320	0.85	+2.1
1,317,687	+		DZA65_RS06320	0.85	+0.9
1,317,688	-		DZA65_RS06320	0.85	-2.1
1,317,688	-		DZA65_RS06320	0.85	-0.5
1,317,688	-		DZA65_RS06320	0.85	+1.8
1,317,742	+				-1.1
1,317,742	+				+0.0
1,317,742	+				-1.5
1,317,742	+				+0.7
1,317,743	-				-0.2
1,317,743	-				-1.5
1,317,743	-				+0.8
1,317,743	-				+1.7
1,317,743	-				-1.1
1,317,743	-				-0.5
1,317,891	+				-0.1
1,317,923	-				+1.0
1,317,939	+				-1.8
1,317,940	-				+2.1
1,317,976	+				+1.1
1,317,976	+				+0.5
1,317,976	+				+1.3
1,317,976	+				-0.7
1,317,977	-				-0.4
1,317,977	-				-1.8
1,317,996	+				+1.0
1,317,997	-				-0.3
1,317,997	-				+0.2
1,317,997	-				+0.2
1,317,997	-				-1.7
1,318,010	+				+1.8
1,318,010	+				-1.5
1,318,010	+				-0.5
1,318,010	+				-1.1
1,318,010	+				+0.5
1,318,010	+				-0.4
1,318,010	+				-0.2
1,318,010	+				-1.1
1,318,010	+				+1.5
1,318,010	+				-1.1
1,318,010	+				-1.5
1,318,010	+				-2.6
1,318,010	+				+1.4
1,318,010	+				-0.7
1,318,010	+				+0.0
1,318,010	+				+1.1
1,318,010	+				+0.1
1,318,010	+				+2.5
1,318,010	+				-1.5
1,318,010	+				-0.0
1,318,010	+				+0.8
1,318,010	+				+1.8
1,318,010	+				+0.5
1,318,010	+				-1.5
1,318,010	+				-2.5
1,318,010	+				-0.2
1,318,011	-				+1.3
1,318,011	-				+0.4
1,318,011	-				+0.9
1,318,011	-				+0.9
1,318,011	-				+0.6
1,318,011	-				-0.0
1,318,011	-				-1.1
1,318,011	-				+0.5
1,318,011	-				-0.1
1,318,011	-				-0.8
1,318,011	-				+1.3
1,318,011	-				+1.9
1,318,014	+				+1.1
1,318,028	+				-1.8
1,318,028	+				-1.5
1,318,028	+				-1.3
1,318,029	-				+0.5
1,318,029	-				-2.1
1,318,075	+				+0.1
1,318,076	-				-0.3
1,318,076	-				+0.1
1,318,110	+				+1.5
1,318,125	+		DZA65_RS06325	0.11	+0.7
1,318,487	+		DZA65_RS06325	0.42	+2.5
1,318,497	-		DZA65_RS06325	0.42	-0.9
1,318,969	+		DZA65_RS06325	0.82	-1.8
1,318,969	+		DZA65_RS06325	0.82	-0.0
1,318,969	+		DZA65_RS06325	0.82	-0.3
1,318,969	+		DZA65_RS06325	0.82	-1.1
1,318,969	+		DZA65_RS06325	0.82	+1.1
1,318,969	+		DZA65_RS06325	0.82	-1.8
1,318,969	+		DZA65_RS06325	0.82	-0.4
1,318,969	+		DZA65_RS06325	0.82	-2.3
1,318,970	-		DZA65_RS06325	0.82	+1.0
1,318,970	-		DZA65_RS06325	0.82	+0.0
1,318,970	-		DZA65_RS06325	0.82	-1.5
1,318,970	-		DZA65_RS06325	0.82	+0.9
1,318,970	-		DZA65_RS06325	0.82	+0.6
1,318,970	-		DZA65_RS06325	0.82	-1.1
1,318,970	-		DZA65_RS06325	0.82	+0.5
1,318,970	-		DZA65_RS06325	0.82	-0.1
1,318,970	-		DZA65_RS06325	0.82	-2.3
1,319,062	+		DZA65_RS06325	0.90	+1.7
1,319,062	+		DZA65_RS06325	0.90	+1.4
1,319,064	+		DZA65_RS06325	0.90	-3.1
1,319,065	-				-1.8
1,319,070	+				+1.1
1,319,127	+				+0.6
1,319,127	+				-2.8
1,319,128	-				-0.8
1,319,143	+				-1.1
1,319,182	+				-0.9
1,319,182	+				+2.5
1,319,182	+				+2.3
1,319,182	+				-2.7
1,319,183	-				+2.7
1,319,234	+				+0.2
1,319,234	+				-0.8
1,319,234	+				+0.9
1,319,234	+				-0.5
1,319,234	+				+0.3
1,319,235	-				-1.1
1,319,235	-				-0.8
1,319,235	-				+0.2
1,319,235	-				+0.2
1,319,235	-				-0.7
1,319,261	-				-0.8
1,319,301	+				-0.5
1,319,302	-				+0.9
1,319,317	-				+0.4
1,319,321	-				-0.1
1,319,340	+				+0.0
1,319,341	-				-0.1
1,319,346	-				-0.6
1,319,359	-				-0.5
1,319,359	-				-1.5
1,319,359	-				+0.1
1,319,359	-				+1.0
1,319,412	+		DZA65_RS06330	0.13	+0.9
1,319,412	+		DZA65_RS06330	0.13	-1.1
1,319,413	-		DZA65_RS06330	0.13	-0.5
1,319,413	-		DZA65_RS06330	0.13	-0.1
1,319,429	-		DZA65_RS06330	0.16	+1.5
1,319,438	+		DZA65_RS06330	0.18	-2.1
1,319,438	+		DZA65_RS06330	0.18	-3.0
1,319,438	+		DZA65_RS06330	0.18	-0.3
1,319,438	+		DZA65_RS06330	0.18	-0.3
1,319,438	+		DZA65_RS06330	0.18	+0.3
1,319,438	+		DZA65_RS06330	0.18	+0.3
1,319,438	+		DZA65_RS06330	0.18	-0.2
1,319,438	+		DZA65_RS06330	0.18	-0.5
1,319,438	+		DZA65_RS06330	0.18	-1.8
1,319,438	+		DZA65_RS06330	0.18	+0.8
1,319,439	-		DZA65_RS06330	0.18	-0.4
1,319,439	-		DZA65_RS06330	0.18	-0.9
1,319,439	-		DZA65_RS06330	0.18	-0.8
1,319,439	-		DZA65_RS06330	0.18	-0.6
1,319,439	-		DZA65_RS06330	0.18	-1.8
1,319,439	-		DZA65_RS06330	0.18	-1.3
1,319,439	-		DZA65_RS06330	0.18	-1.4
1,319,439	-		DZA65_RS06330	0.18	+1.7
1,319,439	-		DZA65_RS06330	0.18	+0.7
1,319,439	-		DZA65_RS06330	0.18	+3.7
1,319,439	-		DZA65_RS06330	0.18	+0.9
1,319,439	-		DZA65_RS06330	0.18	-0.8
1,319,439	-		DZA65_RS06330	0.18	-0.3
1,319,439	-		DZA65_RS06330	0.18	-1.5
1,319,439	-		DZA65_RS06330	0.18	-0.8
1,319,439	-		DZA65_RS06330	0.18	+1.1
1,319,472	-		DZA65_RS06330	0.24	+1.9
1,319,472	-		DZA65_RS06330	0.24	-1.3
1,319,508	+		DZA65_RS06330	0.31	+0.0
1,319,509	-		DZA65_RS06330	0.31	+0.5
1,319,509	-		DZA65_RS06330	0.31	-1.1
1,319,527	+		DZA65_RS06330	0.34	-1.5
1,319,528	-		DZA65_RS06330	0.34	-0.2
1,319,546	+		DZA65_RS06330	0.38	-0.1
1,319,554	-		DZA65_RS06330	0.39	-0.5
1,319,554	-		DZA65_RS06330	0.39	+1.1
1,319,583	+		DZA65_RS06330	0.45	+0.3
1,319,583	+		DZA65_RS06330	0.45	-0.7
1,319,583	+		DZA65_RS06330	0.45	+0.5
1,319,583	+		DZA65_RS06330	0.45	+2.1
1,319,583	+		DZA65_RS06330	0.45	-0.1
1,319,583	+		DZA65_RS06330	0.45	+1.5
1,319,584	-		DZA65_RS06330	0.45	+1.8
1,319,584	-		DZA65_RS06330	0.45	-1.8
1,319,584	-		DZA65_RS06330	0.45	+2.0
1,319,584	-		DZA65_RS06330	0.45	-0.5
1,319,584	-		DZA65_RS06330	0.45	-0.8
1,319,584	-		DZA65_RS06330	0.45	+0.2
1,319,584	-		DZA65_RS06330	0.45	-0.1
1,319,584	-		DZA65_RS06330	0.45	-0.8
1,319,588	-		DZA65_RS06330	0.45	+0.8
1,319,661	-		DZA65_RS06330	0.59	-0.7
1,319,661	-		DZA65_RS06330	0.59	-0.2
1,319,661	-		DZA65_RS06330	0.59	+0.5
1,319,661	-		DZA65_RS06330	0.59	-0.9
1,319,673	+		DZA65_RS06330	0.61	+1.1
1,319,673	+		DZA65_RS06330	0.61	-1.1
1,319,673	+		DZA65_RS06330	0.61	-0.2
1,319,714	-		DZA65_RS06330	0.69	-0.3
1,319,714	-		DZA65_RS06330	0.69	-1.0
1,319,714	-		DZA65_RS06330	0.69	+1.6
1,319,718	+		DZA65_RS06330	0.70	+1.0
1,319,718	+		DZA65_RS06330	0.70	-2.3
1,319,719	-		DZA65_RS06330	0.70	-0.2
1,319,719	-		DZA65_RS06330	0.70	+0.1
1,319,719	-		DZA65_RS06330	0.70	-0.1
1,319,719	-		DZA65_RS06330	0.70	-0.9
1,319,719	-		DZA65_RS06330	0.70	-1.2
1,319,760	+		DZA65_RS06330	0.77	-2.1
1,319,760	+		DZA65_RS06330	0.77	+2.4
1,319,760	+		DZA65_RS06330	0.77	-0.6
1,319,760	+		DZA65_RS06330	0.77	-0.2
1,319,761	-		DZA65_RS06330	0.78	+0.8
1,319,761	-		DZA65_RS06330	0.78	+0.5
1,319,761	-		DZA65_RS06330	0.78	-2.5
1,319,780	-		DZA65_RS06330	0.81	-1.8
1,319,780	-		DZA65_RS06330	0.81	+0.5
1,319,785	-		DZA65_RS06330	0.82	-0.1
1,319,805	+		DZA65_RS06330	0.86	-0.7
1,319,816	+		DZA65_RS06330	0.88	-1.8
1,319,816	+		DZA65_RS06330	0.88	-1.1
1,319,816	+		DZA65_RS06330	0.88	+2.6
1,319,817	-		DZA65_RS06330	0.88	+0.5
1,319,817	-		DZA65_RS06330	0.88	+0.0
1,319,817	-		DZA65_RS06330	0.88	-1.1
1,319,817	-		DZA65_RS06330	0.88	-1.1
1,319,817	-		DZA65_RS06330	0.88	+0.0
1,319,840	+				-1.1
1,319,840	+				-1.1
1,319,840	+				-0.1
1,319,842	+				-0.2
1,319,842	+				+1.5
1,319,843	-				-0.7
1,319,843	-				-1.8
1,319,843	-				-2.1
1,319,848	+				-1.8
1,319,848	+				-0.9
1,319,848	+				-1.1
1,319,848	+				-2.3
1,319,849	-				+0.5
1,319,849	-				-1.8
1,319,856	+				-0.7
1,319,856	+				-1.2
1,319,856	+				-0.5
1,319,856	+				-0.1
1,319,857	-				+0.5
1,319,871	+				-0.7
1,319,871	+				-0.5
1,319,871	+				+0.2
1,319,871	+				-0.5
1,319,872	-				+0.6
1,319,875	+				-0.1
1,319,875	+				-2.3
1,319,875	+				-1.6
1,319,876	-				-0.5
1,319,876	-				+0.2
1,319,876	-				+1.0
1,319,876	-				-3.1
1,319,876	-				-0.3
1,319,876	-				+1.5
1,319,876	-				-0.5
1,319,876	-				-0.1
1,319,876	-				+0.9
1,319,876	-				-0.5
1,319,876	-				+1.7
1,319,876	-				-0.5
1,319,876	-				+0.5
1,319,951	+		DZA65_RS06335	0.29	-0.5
1,319,952	-		DZA65_RS06335	0.29	+0.8
1,319,952	-		DZA65_RS06335	0.29	+0.5
1,320,031	+		DZA65_RS06335	0.54	+1.0
1,320,031	+		DZA65_RS06335	0.54	+2.1
1,320,037	+		DZA65_RS06335	0.56	+0.8
1,320,038	-		DZA65_RS06335	0.57	+0.5
1,320,142	+				+2.5
1,320,161	+				-0.5
1,320,172	+				+2.1