Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02880

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02870 and DZA65_RS02875 are separated by 21 nucleotidesDZA65_RS02875 and DZA65_RS02880 are separated by 54 nucleotidesDZA65_RS02880 and DZA65_RS02885 are separated by 129 nucleotidesDZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotides DZA65_RS02870: DZA65_RS02870 - chorismate lyase, at 616,602 to 617,117 _RS02870 DZA65_RS02875: DZA65_RS02875 - 4-hydroxybenzoate octaprenyltransferase, at 617,139 to 618,002 _RS02875 DZA65_RS02880: DZA65_RS02880 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 618,057 to 620,534 _RS02880 DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029 _RS02885 DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750 _RS02890 Position (kb) 618 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 617.091 kb on + strandat 617.091 kb on + strandat 618.001 kb on - strandat 618.001 kb on - strandat 618.001 kb on - strandat 618.001 kb on - strandat 618.001 kb on - strandat 618.015 kb on + strandat 618.015 kb on + strandat 618.016 kb on - strandat 618.016 kb on - strandat 618.063 kb on + strandat 620.593 kb on + strandat 620.593 kb on + strandat 620.625 kb on - strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.659 kb on + strandat 620.660 kb on - strandat 620.691 kb on - strandat 620.920 kb on - strandat 621.040 kb on - strandat 621.040 kb on - strandat 621.097 kb on + strandat 621.098 kb on - strandat 621.098 kb on - strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.099 kb on + strandat 621.100 kb on - strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strandat 621.101 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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617,091 + -0.9
617,091 + -1.7
618,001 - +0.1
618,001 - -0.2
618,001 - +0.2
618,001 - +2.9
618,001 - +1.0
618,015 + -1.7
618,015 + +2.3
618,016 - +0.3
618,016 - +1.1
618,063 + +1.3
620,593 + -1.1
620,593 + +0.1
620,625 - +1.1
620,659 + -1.6
620,659 + +3.3
620,659 + -2.2
620,659 + +0.7
620,660 - -0.9
620,691 - -1.0
620,920 - -0.9
621,040 - -0.3
621,040 - -1.3
621,097 + -1.3
621,098 - +0.1
621,098 - -0.4
621,099 + -0.7
621,099 + -0.9
621,099 + -0.7
621,099 + -1.1
621,099 + -0.1
621,100 - -2.3
621,101 + -0.3
621,101 + -3.1
621,101 + +3.1
621,101 + +0.2

Or see this region's nucleotide sequence