Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02720 and DZA65_RS02725 are separated by 13 nucleotides DZA65_RS02725 and DZA65_RS02730 overlap by 4 nucleotides
DZA65_RS02720: DZA65_RS02720 - polysaccharide biosynthesis tyrosine autokinase, at 584,112 to 586,244
_RS02720
DZA65_RS02725: DZA65_RS02725 - capsular polysaccharide biosynthesis protein, at 586,258 to 587,469
_RS02725
DZA65_RS02730: DZA65_RS02730 - hypothetical protein, at 587,466 to 588,848
_RS02730
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.267 kb on + strand, within DZA65_RS02720 at 585.268 kb on - strand, within DZA65_RS02720 at 585.268 kb on - strand, within DZA65_RS02720 at 585.268 kb on - strand, within DZA65_RS02720 at 585.268 kb on - strand, within DZA65_RS02720 at 585.268 kb on - strand, within DZA65_RS02720 at 585.269 kb on + strand, within DZA65_RS02720 at 585.269 kb on + strand, within DZA65_RS02720 at 585.269 kb on + strand, within DZA65_RS02720 at 585.269 kb on + strand, within DZA65_RS02720 at 585.270 kb on - strand, within DZA65_RS02720 at 585.280 kb on - strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.315 kb on + strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.316 kb on - strand, within DZA65_RS02720 at 585.335 kb on - strand, within DZA65_RS02720 at 585.335 kb on - strand, within DZA65_RS02720 at 585.381 kb on - strand, within DZA65_RS02720 at 585.435 kb on + strand, within DZA65_RS02720 at 585.435 kb on + strand, within DZA65_RS02720 at 585.435 kb on + strand, within DZA65_RS02720 at 585.436 kb on - strand, within DZA65_RS02720 at 585.436 kb on - strand, within DZA65_RS02720 at 585.436 kb on - strand, within DZA65_RS02720 at 585.446 kb on - strand, within DZA65_RS02720 at 585.446 kb on - strand, within DZA65_RS02720 at 585.461 kb on + strand, within DZA65_RS02720 at 585.744 kb on - strand, within DZA65_RS02720 at 585.744 kb on - strand, within DZA65_RS02720 at 585.874 kb on + strand, within DZA65_RS02720 at 585.874 kb on + strand, within DZA65_RS02720 at 585.875 kb on - strand, within DZA65_RS02720 at 585.914 kb on - strand, within DZA65_RS02720 at 585.980 kb on + strand, within DZA65_RS02720 at 585.981 kb on - strand, within DZA65_RS02720 at 585.981 kb on - strand, within DZA65_RS02720 at 586.040 kb on - strand at 586.112 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.189 kb on + strand at 586.190 kb on - strand at 586.190 kb on - strand at 586.190 kb on - strand at 586.190 kb on - strand at 586.190 kb on - strand at 586.190 kb on - strand at 586.229 kb on + strand at 586.265 kb on + strand at 586.329 kb on + strand at 586.329 kb on + strand at 586.351 kb on + strand at 586.352 kb on - strand at 586.352 kb on - strand at 586.375 kb on + strand at 586.376 kb on - strand at 586.387 kb on + strand, within DZA65_RS02725 at 586.387 kb on + strand, within DZA65_RS02725 at 586.419 kb on + strand, within DZA65_RS02725 at 586.420 kb on - strand, within DZA65_RS02725 at 586.420 kb on - strand, within DZA65_RS02725 at 586.420 kb on - strand, within DZA65_RS02725 at 586.567 kb on + strand, within DZA65_RS02725 at 586.586 kb on - strand, within DZA65_RS02725 at 586.630 kb on - strand, within DZA65_RS02725 at 586.643 kb on + strand, within DZA65_RS02725 at 586.643 kb on + strand, within DZA65_RS02725 at 586.717 kb on + strand, within DZA65_RS02725 at 586.717 kb on + strand, within DZA65_RS02725 at 586.748 kb on + strand, within DZA65_RS02725 at 586.748 kb on + strand, within DZA65_RS02725 at 586.748 kb on + strand, within DZA65_RS02725 at 586.748 kb on + strand, within DZA65_RS02725 at 586.748 kb on + strand, within DZA65_RS02725 at 586.749 kb on - strand, within DZA65_RS02725 at 586.749 kb on - strand, within DZA65_RS02725 at 586.749 kb on - strand, within DZA65_RS02725 at 586.752 kb on + strand, within DZA65_RS02725 at 586.761 kb on + strand, within DZA65_RS02725 at 586.761 kb on + strand, within DZA65_RS02725 at 586.777 kb on - strand, within DZA65_RS02725 at 586.780 kb on - strand, within DZA65_RS02725 at 586.791 kb on + strand, within DZA65_RS02725 at 586.792 kb on - strand, within DZA65_RS02725 at 586.806 kb on + strand, within DZA65_RS02725 at 586.818 kb on + strand, within DZA65_RS02725 at 586.818 kb on + strand, within DZA65_RS02725 at 586.818 kb on + strand, within DZA65_RS02725 at 586.818 kb on + strand, within DZA65_RS02725 at 586.818 kb on + strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.819 kb on - strand, within DZA65_RS02725 at 586.821 kb on + strand, within DZA65_RS02725 at 586.821 kb on + strand, within DZA65_RS02725 at 586.822 kb on - strand, within DZA65_RS02725 at 586.896 kb on + strand, within DZA65_RS02725 at 586.897 kb on - strand, within DZA65_RS02725 at 586.909 kb on - strand, within DZA65_RS02725 at 586.918 kb on - strand, within DZA65_RS02725 at 586.918 kb on - strand, within DZA65_RS02725 at 586.962 kb on - strand, within DZA65_RS02725 at 587.010 kb on + strand, within DZA65_RS02725 at 587.010 kb on + strand, within DZA65_RS02725 at 587.010 kb on + strand, within DZA65_RS02725 at 587.049 kb on + strand, within DZA65_RS02725 at 587.062 kb on + strand, within DZA65_RS02725 at 587.202 kb on + strand, within DZA65_RS02725 at 587.202 kb on + strand, within DZA65_RS02725 at 587.203 kb on - strand, within DZA65_RS02725 at 587.207 kb on + strand, within DZA65_RS02725 at 587.217 kb on - strand, within DZA65_RS02725 at 587.350 kb on - strand at 587.487 kb on + strand at 587.499 kb on + strand at 587.499 kb on + strand at 587.499 kb on + strand at 587.499 kb on + strand at 587.519 kb on - strand at 587.538 kb on + strand at 587.538 kb on + strand at 587.539 kb on - strand at 587.609 kb on + strand, within DZA65_RS02730 at 587.623 kb on - strand, within DZA65_RS02730 at 587.623 kb on - strand, within DZA65_RS02730 at 587.670 kb on + strand, within DZA65_RS02730 at 587.670 kb on + strand, within DZA65_RS02730 at 587.670 kb on + strand, within DZA65_RS02730 at 587.670 kb on + strand, within DZA65_RS02730 at 587.671 kb on - strand, within DZA65_RS02730 at 587.671 kb on - strand, within DZA65_RS02730 at 587.702 kb on + strand, within DZA65_RS02730 at 587.702 kb on + strand, within DZA65_RS02730 at 587.703 kb on - strand, within DZA65_RS02730 at 587.703 kb on - strand, within DZA65_RS02730 at 587.703 kb on - strand, within DZA65_RS02730 at 587.703 kb on - strand, within DZA65_RS02730 at 587.703 kb on - strand, within DZA65_RS02730 at 587.723 kb on - strand, within DZA65_RS02730 at 587.828 kb on + strand, within DZA65_RS02730 at 587.835 kb on + strand, within DZA65_RS02730 at 587.836 kb on - strand, within DZA65_RS02730 at 587.836 kb on - strand, within DZA65_RS02730 at 587.836 kb on - strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.847 kb on + strand, within DZA65_RS02730 at 587.871 kb on + strand, within DZA65_RS02730 at 588.057 kb on - strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.098 kb on + strand, within DZA65_RS02730 at 588.123 kb on - strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.171 kb on + strand, within DZA65_RS02730 at 588.172 kb on - strand at 588.193 kb on + strand, within DZA65_RS02730 at 588.243 kb on - strand at 588.273 kb on + strand, within DZA65_RS02730 at 588.291 kb on - strand, within DZA65_RS02730 at 588.340 kb on - strand, within DZA65_RS02730 at 588.340 kb on - strand, within DZA65_RS02730 at 588.357 kb on + strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.358 kb on - strand, within DZA65_RS02730 at 588.398 kb on - strand, within DZA65_RS02730 at 588.446 kb on - strand, within DZA65_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 585,267 + DZA65_RS02720 0.54 -0.6 585,267 + DZA65_RS02720 0.54 -0.7 585,267 + DZA65_RS02720 0.54 +1.6 585,267 + DZA65_RS02720 0.54 -1.1 585,267 + DZA65_RS02720 0.54 -1.1 585,267 + DZA65_RS02720 0.54 -0.1 585,267 + DZA65_RS02720 0.54 +1.0 585,267 + DZA65_RS02720 0.54 -0.1 585,268 - DZA65_RS02720 0.54 +0.3 585,268 - DZA65_RS02720 0.54 -0.9 585,268 - DZA65_RS02720 0.54 +2.1 585,268 - DZA65_RS02720 0.54 +0.0 585,268 - DZA65_RS02720 0.54 -1.3 585,269 + DZA65_RS02720 0.54 +0.4 585,269 + DZA65_RS02720 0.54 -1.0 585,269 + DZA65_RS02720 0.54 -0.2 585,269 + DZA65_RS02720 0.54 +0.1 585,270 - DZA65_RS02720 0.54 -1.3 585,280 - DZA65_RS02720 0.55 -0.8 585,315 + DZA65_RS02720 0.56 +0.9 585,315 + DZA65_RS02720 0.56 -0.6 585,315 + DZA65_RS02720 0.56 -1.8 585,315 + DZA65_RS02720 0.56 -1.0 585,315 + DZA65_RS02720 0.56 +0.4 585,315 + DZA65_RS02720 0.56 +0.8 585,315 + DZA65_RS02720 0.56 -1.3 585,315 + DZA65_RS02720 0.56 -1.1 585,316 - DZA65_RS02720 0.56 +0.0 585,316 - DZA65_RS02720 0.56 +0.7 585,316 - DZA65_RS02720 0.56 -0.9 585,316 - DZA65_RS02720 0.56 -1.5 585,316 - DZA65_RS02720 0.56 -0.3 585,316 - DZA65_RS02720 0.56 -0.3 585,316 - DZA65_RS02720 0.56 -1.6 585,316 - DZA65_RS02720 0.56 +0.7 585,316 - DZA65_RS02720 0.56 -0.2 585,335 - DZA65_RS02720 0.57 -0.5 585,335 - DZA65_RS02720 0.57 -2.3 585,381 - DZA65_RS02720 0.59 -0.4 585,435 + DZA65_RS02720 0.62 -0.3 585,435 + DZA65_RS02720 0.62 -1.2 585,435 + DZA65_RS02720 0.62 -0.4 585,436 - DZA65_RS02720 0.62 +0.2 585,436 - DZA65_RS02720 0.62 +0.1 585,436 - DZA65_RS02720 0.62 +1.5 585,446 - DZA65_RS02720 0.63 +0.5 585,446 - DZA65_RS02720 0.63 -1.5 585,461 + DZA65_RS02720 0.63 -0.3 585,744 - DZA65_RS02720 0.77 -1.6 585,744 - DZA65_RS02720 0.77 +1.7 585,874 + DZA65_RS02720 0.83 -1.9 585,874 + DZA65_RS02720 0.83 -1.3 585,875 - DZA65_RS02720 0.83 -1.6 585,914 - DZA65_RS02720 0.84 +1.8 585,980 + DZA65_RS02720 0.88 -0.1 585,981 - DZA65_RS02720 0.88 +0.7 585,981 - DZA65_RS02720 0.88 -0.9 586,040 - +0.5 586,112 + +0.7 586,189 + -1.8 586,189 + -0.3 586,189 + +0.0 586,189 + -1.9 586,189 + -2.1 586,189 + -0.3 586,189 + -1.4 586,190 - +1.4 586,190 - -0.6 586,190 - -0.6 586,190 - -0.3 586,190 - -0.7 586,190 - +0.0 586,229 + -1.1 586,265 + -1.6 586,329 + -0.9 586,329 + -1.7 586,351 + -1.6 586,352 - -0.1 586,352 - -1.3 586,375 + +1.5 586,376 - -0.5 586,387 + DZA65_RS02725 0.11 -2.5 586,387 + DZA65_RS02725 0.11 -0.3 586,419 + DZA65_RS02725 0.13 -1.6 586,420 - DZA65_RS02725 0.13 -0.1 586,420 - DZA65_RS02725 0.13 +0.9 586,420 - DZA65_RS02725 0.13 -0.9 586,567 + DZA65_RS02725 0.25 -1.3 586,586 - DZA65_RS02725 0.27 +0.0 586,630 - DZA65_RS02725 0.31 -1.9 586,643 + DZA65_RS02725 0.32 -1.3 586,643 + DZA65_RS02725 0.32 -0.8 586,717 + DZA65_RS02725 0.38 +0.9 586,717 + DZA65_RS02725 0.38 +0.7 586,748 + DZA65_RS02725 0.40 -1.6 586,748 + DZA65_RS02725 0.40 -1.0 586,748 + DZA65_RS02725 0.40 -0.1 586,748 + DZA65_RS02725 0.40 -0.9 586,748 + DZA65_RS02725 0.40 +0.2 586,749 - DZA65_RS02725 0.41 -0.9 586,749 - DZA65_RS02725 0.41 -0.9 586,749 - DZA65_RS02725 0.41 -1.3 586,752 + DZA65_RS02725 0.41 -2.1 586,761 + DZA65_RS02725 0.42 +0.7 586,761 + DZA65_RS02725 0.42 -1.9 586,777 - DZA65_RS02725 0.43 +1.1 586,780 - DZA65_RS02725 0.43 -0.3 586,791 + DZA65_RS02725 0.44 -2.3 586,792 - DZA65_RS02725 0.44 -0.0 586,806 + DZA65_RS02725 0.45 -0.3 586,818 + DZA65_RS02725 0.46 -1.9 586,818 + DZA65_RS02725 0.46 +0.1 586,818 + DZA65_RS02725 0.46 +0.7 586,818 + DZA65_RS02725 0.46 -2.1 586,818 + DZA65_RS02725 0.46 -1.1 586,819 - DZA65_RS02725 0.46 +0.0 586,819 - DZA65_RS02725 0.46 +0.7 586,819 - DZA65_RS02725 0.46 -1.0 586,819 - DZA65_RS02725 0.46 -2.5 586,819 - DZA65_RS02725 0.46 -1.2 586,819 - DZA65_RS02725 0.46 -3.1 586,819 - DZA65_RS02725 0.46 -0.9 586,819 - DZA65_RS02725 0.46 +0.1 586,819 - DZA65_RS02725 0.46 -1.9 586,819 - DZA65_RS02725 0.46 -1.9 586,821 + DZA65_RS02725 0.46 -2.1 586,821 + DZA65_RS02725 0.46 -1.5 586,822 - DZA65_RS02725 0.47 -1.3 586,896 + DZA65_RS02725 0.53 +1.1 586,897 - DZA65_RS02725 0.53 -0.5 586,909 - DZA65_RS02725 0.54 -1.3 586,918 - DZA65_RS02725 0.54 +1.7 586,918 - DZA65_RS02725 0.54 -1.6 586,962 - DZA65_RS02725 0.58 -2.0 587,010 + DZA65_RS02725 0.62 -1.6 587,010 + DZA65_RS02725 0.62 -2.2 587,010 + DZA65_RS02725 0.62 -0.8 587,049 + DZA65_RS02725 0.65 -0.8 587,062 + DZA65_RS02725 0.66 -0.3 587,202 + DZA65_RS02725 0.78 -1.3 587,202 + DZA65_RS02725 0.78 -2.5 587,203 - DZA65_RS02725 0.78 -1.8 587,207 + DZA65_RS02725 0.78 -1.6 587,217 - DZA65_RS02725 0.79 -2.0 587,350 - -1.6 587,487 + -0.3 587,499 + +0.2 587,499 + -1.2 587,499 + -1.1 587,499 + +0.3 587,519 - +1.5 587,538 + +0.4 587,538 + -0.9 587,539 - -0.6 587,609 + DZA65_RS02730 0.10 -0.5 587,623 - DZA65_RS02730 0.11 +1.2 587,623 - DZA65_RS02730 0.11 +0.9 587,670 + DZA65_RS02730 0.15 +0.9 587,670 + DZA65_RS02730 0.15 +1.9 587,670 + DZA65_RS02730 0.15 -0.5 587,670 + DZA65_RS02730 0.15 -2.1 587,671 - DZA65_RS02730 0.15 +0.5 587,671 - DZA65_RS02730 0.15 -1.6 587,702 + DZA65_RS02730 0.17 -0.0 587,702 + DZA65_RS02730 0.17 -0.1 587,703 - DZA65_RS02730 0.17 +2.3 587,703 - DZA65_RS02730 0.17 +1.5 587,703 - DZA65_RS02730 0.17 +1.2 587,703 - DZA65_RS02730 0.17 -1.5 587,703 - DZA65_RS02730 0.17 +1.7 587,723 - DZA65_RS02730 0.19 +0.7 587,828 + DZA65_RS02730 0.26 -0.3 587,835 + DZA65_RS02730 0.27 +0.6 587,836 - DZA65_RS02730 0.27 -0.5 587,836 - DZA65_RS02730 0.27 -0.4 587,836 - DZA65_RS02730 0.27 -0.1 587,847 + DZA65_RS02730 0.28 -0.8 587,847 + DZA65_RS02730 0.28 -1.6 587,847 + DZA65_RS02730 0.28 +0.4 587,847 + DZA65_RS02730 0.28 +1.9 587,871 + DZA65_RS02730 0.29 +1.6 588,057 - DZA65_RS02730 0.43 -0.1 588,098 + DZA65_RS02730 0.46 +0.7 588,098 + DZA65_RS02730 0.46 +1.4 588,098 + DZA65_RS02730 0.46 +0.3 588,123 - DZA65_RS02730 0.48 +1.4 588,171 + DZA65_RS02730 0.51 -0.7 588,171 + DZA65_RS02730 0.51 -1.6 588,171 + DZA65_RS02730 0.51 -0.3 588,171 + DZA65_RS02730 0.51 +0.4 588,172 - -1.6 588,193 + DZA65_RS02730 0.53 +0.7 588,243 - +2.3 588,273 + DZA65_RS02730 0.58 +0.7 588,291 - DZA65_RS02730 0.60 +0.3 588,340 - DZA65_RS02730 0.63 +1.4 588,340 - DZA65_RS02730 0.63 -0.5 588,357 + DZA65_RS02730 0.64 +1.5 588,358 - DZA65_RS02730 0.64 +0.4 588,358 - DZA65_RS02730 0.64 -0.1 588,358 - DZA65_RS02730 0.64 +0.4 588,398 - DZA65_RS02730 0.67 +1.3 588,446 - DZA65_RS02730 0.71 -1.3
Or see this region's nucleotide sequence