Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotides DZA65_RS01900 and DZA65_RS01905 overlap by 8 nucleotides DZA65_RS01905 and DZA65_RS01910 are separated by 102 nucleotides DZA65_RS01910 and DZA65_RS01915 are separated by 54 nucleotides
DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459
_RS01895
DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308
_RS01900
DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896
_RS01905
DZA65_RS01910: DZA65_RS01910 - Hcp family type VI secretion system effector, at 420,999 to 421,478
_RS01910
DZA65_RS01915: DZA65_RS01915 - hypothetical protein, at 421,533 to 422,132
_RS01915
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.313 kb on + strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand, within DZA65_RS01895 at 418.314 kb on - strand at 418.314 kb on - strand, within DZA65_RS01895 at 418.325 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.343 kb on - strand, within DZA65_RS01895 at 418.385 kb on + strand at 418.386 kb on - strand at 418.386 kb on - strand at 418.396 kb on + strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.397 kb on - strand at 418.478 kb on + strand at 418.479 kb on - strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.484 kb on + strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.485 kb on - strand at 418.578 kb on - strand, within DZA65_RS01900 at 418.691 kb on - strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.873 kb on + strand, within DZA65_RS01900 at 418.902 kb on + strand, within DZA65_RS01900 at 418.903 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 418.924 kb on - strand, within DZA65_RS01900 at 419.075 kb on - strand, within DZA65_RS01900 at 419.265 kb on + strand at 419.265 kb on + strand at 419.281 kb on + strand at 419.282 kb on - strand at 419.384 kb on + strand at 419.384 kb on + strand at 419.384 kb on + strand at 419.471 kb on + strand, within DZA65_RS01905 at 419.472 kb on - strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.580 kb on + strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.581 kb on - strand, within DZA65_RS01905 at 419.844 kb on - strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.928 kb on + strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 419.929 kb on - strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.048 kb on + strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.049 kb on - strand, within DZA65_RS01905 at 420.064 kb on + strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.065 kb on - strand, within DZA65_RS01905 at 420.293 kb on - strand, within DZA65_RS01905 at 420.560 kb on - strand, within DZA65_RS01905 at 420.597 kb on - strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.693 kb on + strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.694 kb on - strand, within DZA65_RS01905 at 420.716 kb on - strand, within DZA65_RS01905 at 420.820 kb on - strand at 420.894 kb on + strand at 420.895 kb on - strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.925 kb on + strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.926 kb on - strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.927 kb on + strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.928 kb on - strand at 420.939 kb on + strand at 420.940 kb on - strand at 420.968 kb on - strand at 420.973 kb on + strand at 420.973 kb on + strand at 420.977 kb on + strand at 420.977 kb on + strand at 420.981 kb on + strand at 420.998 kb on + strand at 420.998 kb on + strand at 421.011 kb on - strand at 421.011 kb on - strand at 421.114 kb on + strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.115 kb on - strand, within DZA65_RS01910 at 421.121 kb on - strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.139 kb on + strand, within DZA65_RS01910 at 421.140 kb on - strand, within DZA65_RS01910 at 421.217 kb on + strand, within DZA65_RS01910 at 421.218 kb on - strand, within DZA65_RS01910 at 421.223 kb on + strand, within DZA65_RS01910 at 421.226 kb on + strand, within DZA65_RS01910 at 421.250 kb on + strand, within DZA65_RS01910 at 421.358 kb on + strand, within DZA65_RS01910 at 421.384 kb on - strand, within DZA65_RS01910 at 421.395 kb on - strand, within DZA65_RS01910 at 421.449 kb on + strand at 421.450 kb on - strand at 421.451 kb on + strand at 421.452 kb on - strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.454 kb on + strand at 421.455 kb on - strand at 421.455 kb on - strand at 421.517 kb on + strand at 421.519 kb on + strand at 421.519 kb on + strand at 421.521 kb on + strand at 421.634 kb on + strand, within DZA65_RS01915 at 421.634 kb on + strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.635 kb on - strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.710 kb on + strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.711 kb on - strand, within DZA65_RS01915 at 421.713 kb on + strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.714 kb on - strand, within DZA65_RS01915 at 421.745 kb on + strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.821 kb on - strand, within DZA65_RS01915 at 421.854 kb on - strand, within DZA65_RS01915 at 421.880 kb on - strand, within DZA65_RS01915 at 421.895 kb on + strand, within DZA65_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 418,313 + DZA65_RS01895 0.85 -0.4 418,313 + DZA65_RS01895 0.85 +0.8 418,313 + DZA65_RS01895 0.85 +0.8 418,313 + DZA65_RS01895 0.85 +0.0 418,313 + DZA65_RS01895 0.85 -1.5 418,313 + DZA65_RS01895 0.85 +0.2 418,313 + DZA65_RS01895 0.85 +0.1 418,313 + DZA65_RS01895 0.85 -0.6 418,313 + DZA65_RS01895 0.85 +0.2 418,313 + DZA65_RS01895 0.85 +0.8 418,313 + DZA65_RS01895 0.85 +0.5 418,313 + DZA65_RS01895 0.85 -0.4 418,313 + DZA65_RS01895 0.85 +2.4 418,314 - DZA65_RS01895 0.85 -1.3 418,314 - DZA65_RS01895 0.85 -1.5 418,314 - DZA65_RS01895 0.85 -1.2 418,314 - DZA65_RS01895 0.85 +1.6 418,314 - DZA65_RS01895 0.85 +0.6 418,314 - DZA65_RS01895 0.85 +0.5 418,314 - DZA65_RS01895 0.85 -0.8 418,314 - DZA65_RS01895 0.85 -0.8 418,314 - DZA65_RS01895 0.85 -0.2 418,314 - DZA65_RS01895 0.85 +0.6 418,314 - DZA65_RS01895 0.85 +0.8 418,314 - DZA65_RS01895 0.85 +1.6 418,314 - DZA65_RS01895 0.85 +0.3 418,314 - DZA65_RS01895 0.85 +2.6 418,314 - DZA65_RS01895 0.85 -0.0 418,314 - DZA65_RS01895 0.85 +1.8 418,314 - +0.8 418,314 - DZA65_RS01895 0.85 +1.5 418,325 - DZA65_RS01895 0.87 -1.0 418,343 - DZA65_RS01895 0.88 -2.2 418,343 - DZA65_RS01895 0.88 -0.5 418,343 - DZA65_RS01895 0.88 +2.5 418,385 + +0.2 418,386 - +0.8 418,386 - -0.3 418,396 + +0.5 418,397 - -0.8 418,397 - +1.0 418,397 - -0.0 418,397 - -2.9 418,478 + -3.0 418,479 - -1.0 418,484 + -0.5 418,484 + +0.7 418,484 + -0.5 418,484 + -0.5 418,484 + +0.3 418,484 + -2.2 418,484 + +0.8 418,484 + -0.8 418,484 + -0.2 418,484 + +1.8 418,484 + +0.8 418,484 + -0.9 418,484 + -1.2 418,485 - +0.1 418,485 - -1.9 418,485 - -1.1 418,485 - -3.4 418,485 - +1.5 418,485 - +0.7 418,485 - +0.5 418,485 - -0.6 418,485 - +0.5 418,485 - +1.8 418,485 - +0.5 418,485 - -0.2 418,485 - -0.2 418,485 - +1.1 418,485 - -1.1 418,485 - +0.3 418,485 - +0.5 418,485 - +0.5 418,485 - +0.0 418,578 - DZA65_RS01900 0.11 +0.2 418,691 - DZA65_RS01900 0.25 -2.1 418,873 + DZA65_RS01900 0.47 +0.3 418,873 + DZA65_RS01900 0.47 -0.2 418,902 + DZA65_RS01900 0.50 -1.1 418,903 - DZA65_RS01900 0.51 -2.0 418,924 - DZA65_RS01900 0.53 +0.8 418,924 - DZA65_RS01900 0.53 -0.5 418,924 - DZA65_RS01900 0.53 -0.8 418,924 - DZA65_RS01900 0.53 +0.9 419,075 - DZA65_RS01900 0.72 -0.2 419,265 + -0.2 419,265 + -1.0 419,281 + -0.4 419,282 - +0.2 419,384 + +1.8 419,384 + +1.3 419,384 + +1.0 419,471 + DZA65_RS01905 0.11 +0.5 419,472 - DZA65_RS01905 0.11 +1.0 419,580 + DZA65_RS01905 0.17 +0.1 419,580 + DZA65_RS01905 0.17 -1.8 419,580 + DZA65_RS01905 0.17 -0.6 419,580 + DZA65_RS01905 0.17 +0.0 419,580 + DZA65_RS01905 0.17 +1.1 419,581 - DZA65_RS01905 0.18 +0.8 419,581 - DZA65_RS01905 0.18 +0.0 419,581 - DZA65_RS01905 0.18 +1.6 419,581 - DZA65_RS01905 0.18 +0.5 419,844 - DZA65_RS01905 0.34 -1.0 419,928 + DZA65_RS01905 0.39 +0.5 419,928 + DZA65_RS01905 0.39 -0.0 419,928 + DZA65_RS01905 0.39 -1.2 419,929 - DZA65_RS01905 0.39 +0.9 419,929 - DZA65_RS01905 0.39 +1.1 419,929 - DZA65_RS01905 0.39 -0.3 419,929 - DZA65_RS01905 0.39 -2.0 420,048 + DZA65_RS01905 0.47 +0.1 420,048 + DZA65_RS01905 0.47 -0.5 420,048 + DZA65_RS01905 0.47 -1.8 420,048 + DZA65_RS01905 0.47 -0.2 420,048 + DZA65_RS01905 0.47 -2.7 420,048 + DZA65_RS01905 0.47 -0.4 420,049 - DZA65_RS01905 0.47 -1.0 420,049 - DZA65_RS01905 0.47 -0.8 420,049 - DZA65_RS01905 0.47 -0.3 420,064 + DZA65_RS01905 0.48 +1.2 420,065 - DZA65_RS01905 0.48 +0.1 420,065 - DZA65_RS01905 0.48 -0.8 420,065 - DZA65_RS01905 0.48 -0.5 420,293 - DZA65_RS01905 0.62 -1.5 420,560 - DZA65_RS01905 0.79 -2.8 420,597 - DZA65_RS01905 0.81 +0.2 420,693 + DZA65_RS01905 0.87 -1.2 420,693 + DZA65_RS01905 0.87 +0.6 420,694 - DZA65_RS01905 0.87 +0.0 420,694 - DZA65_RS01905 0.87 +2.0 420,716 - DZA65_RS01905 0.89 -0.0 420,820 - -2.8 420,894 + -0.8 420,895 - -1.8 420,925 + -1.2 420,925 + +0.8 420,925 + -1.3 420,925 + +0.4 420,925 + -0.5 420,925 + -0.2 420,925 + -1.2 420,925 + -0.5 420,926 - +0.1 420,926 - -3.0 420,926 - -2.2 420,926 - -0.7 420,926 - -2.2 420,927 + -1.0 420,927 + +1.0 420,927 + -0.8 420,927 + -2.4 420,927 + +1.2 420,928 - +1.5 420,928 - +0.3 420,928 - -0.0 420,928 - +1.8 420,928 - -1.2 420,928 - -1.2 420,928 - +0.0 420,928 - +0.4 420,939 + -0.8 420,940 - +1.8 420,968 - -0.1 420,973 + +0.2 420,973 + -0.1 420,977 + +1.3 420,977 + +1.0 420,981 + +2.1 420,998 + -0.8 420,998 + -2.1 421,011 - -1.2 421,011 - +0.8 421,114 + DZA65_RS01910 0.24 -0.5 421,115 - DZA65_RS01910 0.24 -0.4 421,115 - DZA65_RS01910 0.24 +1.2 421,115 - DZA65_RS01910 0.24 +0.6 421,121 - DZA65_RS01910 0.25 -0.8 421,139 + DZA65_RS01910 0.29 +1.7 421,139 + DZA65_RS01910 0.29 -1.2 421,140 - DZA65_RS01910 0.29 -1.2 421,217 + DZA65_RS01910 0.45 +0.8 421,218 - DZA65_RS01910 0.46 +0.0 421,223 + DZA65_RS01910 0.47 -0.4 421,226 + DZA65_RS01910 0.47 -1.4 421,250 + DZA65_RS01910 0.52 -1.7 421,358 + DZA65_RS01910 0.75 +0.8 421,384 - DZA65_RS01910 0.80 -0.8 421,395 - DZA65_RS01910 0.82 +0.6 421,449 + +1.1 421,450 - -0.1 421,451 + +0.0 421,452 - -0.7 421,454 + +0.2 421,454 + +0.1 421,454 + +3.5 421,455 - +0.4 421,455 - -0.7 421,517 + +0.5 421,519 + -1.1 421,519 + +0.0 421,521 + -0.3 421,634 + DZA65_RS01915 0.17 +0.0 421,634 + DZA65_RS01915 0.17 +1.3 421,635 - DZA65_RS01915 0.17 -2.2 421,635 - DZA65_RS01915 0.17 +1.4 421,710 + DZA65_RS01915 0.29 -0.2 421,710 + DZA65_RS01915 0.29 -0.4 421,710 + DZA65_RS01915 0.29 +0.1 421,710 + DZA65_RS01915 0.29 +1.2 421,710 + DZA65_RS01915 0.29 +0.5 421,710 + DZA65_RS01915 0.29 +0.2 421,710 + DZA65_RS01915 0.29 -0.2 421,711 - DZA65_RS01915 0.30 +1.7 421,711 - DZA65_RS01915 0.30 +0.9 421,711 - DZA65_RS01915 0.30 +0.4 421,711 - DZA65_RS01915 0.30 +1.6 421,711 - DZA65_RS01915 0.30 +1.8 421,711 - DZA65_RS01915 0.30 +0.5 421,713 + DZA65_RS01915 0.30 -0.7 421,714 - DZA65_RS01915 0.30 -0.4 421,714 - DZA65_RS01915 0.30 +2.1 421,745 + DZA65_RS01915 0.35 +0.2 421,821 - DZA65_RS01915 0.48 -1.6 421,821 - DZA65_RS01915 0.48 -0.4 421,821 - DZA65_RS01915 0.48 -0.4 421,821 - DZA65_RS01915 0.48 -1.0 421,854 - DZA65_RS01915 0.54 +0.2 421,880 - DZA65_RS01915 0.58 +0.0 421,895 + DZA65_RS01915 0.60 -0.4
Or see this region's nucleotide sequence