Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00895 and DZA65_RS00900 are separated by 300 nucleotides DZA65_RS00900 and DZA65_RS00905 overlap by 20 nucleotides
DZA65_RS00895: DZA65_RS00895 - phosphoenolpyruvate carboxylase, at 200,126 to 202,765
_RS00895
DZA65_RS00900: DZA65_RS00900 - ATP-binding cassette domain-containing protein, at 203,066 to 205,195
_RS00900
DZA65_RS00905: DZA65_RS00905 - ThiF family adenylyltransferase, at 205,176 to 206,270
_RS00905
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 202.260 kb on + strand, within DZA65_RS00895 at 202.261 kb on - strand, within DZA65_RS00895 at 202.300 kb on + strand, within DZA65_RS00895 at 202.300 kb on + strand, within DZA65_RS00895 at 202.300 kb on + strand, within DZA65_RS00895 at 202.300 kb on + strand, within DZA65_RS00895 at 202.300 kb on + strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.301 kb on - strand, within DZA65_RS00895 at 202.310 kb on + strand, within DZA65_RS00895 at 202.311 kb on - strand, within DZA65_RS00895 at 202.364 kb on + strand, within DZA65_RS00895 at 202.495 kb on + strand, within DZA65_RS00895 at 202.495 kb on + strand, within DZA65_RS00895 at 202.495 kb on + strand, within DZA65_RS00895 at 202.495 kb on + strand, within DZA65_RS00895 at 202.495 kb on + strand, within DZA65_RS00895 at 202.496 kb on - strand, within DZA65_RS00895 at 202.496 kb on - strand, within DZA65_RS00895 at 202.503 kb on + strand at 202.639 kb on + strand at 202.639 kb on + strand at 202.639 kb on + strand at 202.639 kb on + strand at 202.639 kb on + strand at 202.640 kb on - strand at 202.640 kb on - strand at 202.640 kb on - strand at 202.640 kb on - strand at 202.640 kb on - strand at 202.640 kb on - strand at 202.643 kb on + strand at 202.644 kb on - strand at 202.644 kb on - strand at 202.702 kb on + strand at 202.752 kb on + strand at 202.752 kb on + strand at 202.753 kb on - strand at 202.753 kb on - strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.765 kb on + strand at 202.766 kb on - strand at 202.766 kb on - strand at 202.766 kb on - strand at 202.766 kb on - strand at 202.766 kb on - strand at 202.766 kb on - strand at 202.769 kb on + strand at 202.770 kb on - strand at 202.794 kb on + strand at 202.834 kb on + strand at 202.834 kb on + strand at 202.835 kb on - strand at 202.835 kb on - strand at 202.835 kb on - strand at 202.835 kb on - strand at 202.838 kb on + strand at 202.839 kb on - strand at 202.839 kb on - strand at 202.875 kb on + strand at 202.875 kb on + strand at 202.875 kb on + strand at 202.882 kb on + strand at 202.883 kb on - strand at 202.883 kb on - strand at 202.883 kb on - strand at 202.883 kb on - strand at 202.883 kb on - strand at 202.883 kb on - strand at 202.891 kb on - strand at 202.899 kb on - strand at 202.947 kb on + strand at 202.947 kb on + strand at 202.947 kb on + strand at 202.948 kb on - strand at 202.948 kb on - strand at 202.948 kb on - strand at 202.948 kb on - strand at 202.948 kb on - strand at 202.948 kb on - strand at 202.958 kb on + strand at 202.958 kb on + strand at 202.958 kb on + strand at 202.958 kb on + strand at 202.958 kb on + strand at 202.958 kb on + strand at 202.959 kb on - strand at 203.026 kb on + strand at 203.026 kb on + strand at 203.026 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.030 kb on + strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.031 kb on - strand at 203.037 kb on + strand at 203.037 kb on + strand at 203.037 kb on + strand at 203.037 kb on + strand at 203.037 kb on + strand at 203.038 kb on - strand at 203.038 kb on - strand at 203.038 kb on - strand at 203.038 kb on - strand at 203.040 kb on - strand at 203.172 kb on + strand at 203.297 kb on - strand at 203.334 kb on - strand, within DZA65_RS00900 at 203.415 kb on - strand, within DZA65_RS00900 at 203.576 kb on - strand, within DZA65_RS00900 at 203.585 kb on - strand, within DZA65_RS00900 at 203.587 kb on - strand, within DZA65_RS00900 at 203.764 kb on - strand, within DZA65_RS00900 at 204.309 kb on - strand, within DZA65_RS00900 at 204.461 kb on - strand, within DZA65_RS00900 at 204.504 kb on - strand, within DZA65_RS00900 at 204.504 kb on - strand, within DZA65_RS00900 at 204.504 kb on - strand, within DZA65_RS00900 at 204.510 kb on - strand, within DZA65_RS00900 at 204.510 kb on - strand, within DZA65_RS00900 at 204.556 kb on + strand, within DZA65_RS00900 at 204.738 kb on - strand, within DZA65_RS00900 at 204.759 kb on - strand, within DZA65_RS00900 at 204.865 kb on + strand, within DZA65_RS00900 at 204.910 kb on - strand, within DZA65_RS00900 at 205.064 kb on - strand at 205.185 kb on - strand at 205.315 kb on - strand, within DZA65_RS00905 at 205.388 kb on + strand, within DZA65_RS00905 at 205.433 kb on + strand, within DZA65_RS00905 at 205.549 kb on - strand, within DZA65_RS00905 at 205.731 kb on - strand, within DZA65_RS00905 at 205.855 kb on + strand, within DZA65_RS00905 at 205.856 kb on - strand, within DZA65_RS00905 at 205.856 kb on - strand, within DZA65_RS00905 at 205.856 kb on - strand, within DZA65_RS00905 at 205.919 kb on + strand, within DZA65_RS00905 at 205.926 kb on - strand, within DZA65_RS00905 at 205.950 kb on - strand, within DZA65_RS00905 at 205.971 kb on - strand, within DZA65_RS00905 at 206.012 kb on - strand, within DZA65_RS00905 at 206.028 kb on + strand at 206.070 kb on + strand, within DZA65_RS00905 at 206.146 kb on - strand, within DZA65_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 202,260 + DZA65_RS00895 0.81 -0.1 202,261 - DZA65_RS00895 0.81 -0.4 202,300 + DZA65_RS00895 0.82 +1.2 202,300 + DZA65_RS00895 0.82 +0.6 202,300 + DZA65_RS00895 0.82 -0.5 202,300 + DZA65_RS00895 0.82 -1.4 202,300 + DZA65_RS00895 0.82 -0.4 202,301 - DZA65_RS00895 0.82 -0.3 202,301 - DZA65_RS00895 0.82 -0.1 202,301 - -1.1 202,301 - DZA65_RS00895 0.82 -1.3 202,301 - DZA65_RS00895 0.82 -1.6 202,301 - DZA65_RS00895 0.82 -1.0 202,301 - DZA65_RS00895 0.82 -1.1 202,301 - DZA65_RS00895 0.82 -0.1 202,310 + DZA65_RS00895 0.83 -0.6 202,311 - DZA65_RS00895 0.83 +1.1 202,364 + DZA65_RS00895 0.85 +1.9 202,495 + DZA65_RS00895 0.90 +1.1 202,495 + DZA65_RS00895 0.90 +1.2 202,495 + DZA65_RS00895 0.90 +0.4 202,495 + DZA65_RS00895 0.90 +2.1 202,495 + DZA65_RS00895 0.90 -1.1 202,496 - DZA65_RS00895 0.90 -0.1 202,496 - DZA65_RS00895 0.90 -1.4 202,503 + -1.4 202,639 + +0.4 202,639 + -0.7 202,639 + -0.6 202,639 + -1.1 202,639 + +0.9 202,640 - +0.8 202,640 - -1.4 202,640 - -0.7 202,640 - +0.5 202,640 - -1.3 202,640 - -3.3 202,643 + -0.4 202,644 - -0.1 202,644 - +0.0 202,702 + -2.3 202,752 + +0.1 202,752 + +0.9 202,753 - -1.9 202,753 - -0.7 202,765 + -1.6 202,765 + +0.9 202,765 + -0.7 202,765 + +0.2 202,765 + +0.3 202,765 + -0.3 202,765 + +1.3 202,766 - -0.9 202,766 - +0.8 202,766 - +0.3 202,766 - +1.1 202,766 - -1.7 202,766 - +0.1 202,769 + +1.0 202,770 - -0.1 202,794 + +0.7 202,834 + +0.1 202,834 + -1.4 202,835 - -1.4 202,835 - -0.7 202,835 - -0.2 202,835 - -0.1 202,838 + -0.1 202,839 - -0.9 202,839 - -1.1 202,875 + +2.2 202,875 + +0.5 202,875 + -0.4 202,882 + -0.7 202,883 - -0.0 202,883 - +1.1 202,883 - -1.7 202,883 - -1.9 202,883 - -1.1 202,883 - -1.4 202,891 - +0.3 202,899 - -1.1 202,947 + +1.1 202,947 + +0.3 202,947 + +0.0 202,948 - -0.7 202,948 - +0.0 202,948 - +0.7 202,948 - +0.3 202,948 - +0.6 202,948 - +0.9 202,958 + -1.3 202,958 + -2.1 202,958 + +0.4 202,958 + -1.9 202,958 + -1.9 202,958 + -1.9 202,959 - -0.8 203,026 + +0.3 203,026 + +2.9 203,026 + -1.3 203,030 + +0.5 203,030 + +2.8 203,030 + +0.7 203,030 + +0.4 203,030 + +0.6 203,030 + +2.8 203,030 + -0.1 203,030 + -0.3 203,030 + -1.3 203,030 + +1.5 203,030 + +0.9 203,031 - +1.3 203,031 - +0.4 203,031 - -0.6 203,031 - -2.3 203,031 - -1.4 203,031 - -0.4 203,031 - -1.7 203,031 - +1.8 203,031 - -1.1 203,031 - +1.0 203,031 - +2.2 203,037 + +1.9 203,037 + -1.4 203,037 + -0.3 203,037 + -0.3 203,037 + -0.4 203,038 - +0.9 203,038 - -0.0 203,038 - -0.1 203,038 - +1.2 203,040 - +0.9 203,172 + -1.9 203,297 - -1.7 203,334 - DZA65_RS00900 0.13 -1.4 203,415 - DZA65_RS00900 0.16 +0.2 203,576 - DZA65_RS00900 0.24 -0.7 203,585 - DZA65_RS00900 0.24 -1.4 203,587 - DZA65_RS00900 0.24 -1.4 203,764 - DZA65_RS00900 0.33 -2.3 204,309 - DZA65_RS00900 0.58 +0.7 204,461 - DZA65_RS00900 0.65 -3.0 204,504 - DZA65_RS00900 0.68 -3.4 204,504 - DZA65_RS00900 0.68 -1.4 204,504 - DZA65_RS00900 0.68 +1.1 204,510 - DZA65_RS00900 0.68 -2.2 204,510 - DZA65_RS00900 0.68 -1.1 204,556 + DZA65_RS00900 0.70 -0.3 204,738 - DZA65_RS00900 0.78 -1.7 204,759 - DZA65_RS00900 0.79 -0.7 204,865 + DZA65_RS00900 0.84 +1.3 204,910 - DZA65_RS00900 0.87 -3.9 205,064 - -1.4 205,185 - +0.5 205,315 - DZA65_RS00905 0.13 +1.6 205,388 + DZA65_RS00905 0.19 +1.0 205,433 + DZA65_RS00905 0.23 -1.6 205,549 - DZA65_RS00905 0.34 +0.4 205,731 - DZA65_RS00905 0.51 +0.9 205,855 + DZA65_RS00905 0.62 -2.0 205,856 - DZA65_RS00905 0.62 +0.1 205,856 - DZA65_RS00905 0.62 +0.4 205,856 - DZA65_RS00905 0.62 -2.3 205,919 + DZA65_RS00905 0.68 +0.1 205,926 - DZA65_RS00905 0.68 +0.9 205,950 - DZA65_RS00905 0.71 -0.4 205,971 - DZA65_RS00905 0.73 +0.4 206,012 - DZA65_RS00905 0.76 -1.9 206,028 + -0.1 206,070 + DZA65_RS00905 0.82 +0.9 206,146 - DZA65_RS00905 0.89 -0.4
Or see this region's nucleotide sequence