Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00040

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
9,598	+		DZA65_RS00035	0.63	+0.7
9,637	-		DZA65_RS00035	0.65	-0.6
9,637	-		DZA65_RS00035	0.65	-0.2
9,637	-		DZA65_RS00035	0.65	+0.2
9,637	-		DZA65_RS00035	0.65	+2.5
9,637	-		DZA65_RS00035	0.65	+0.7
9,637	-		DZA65_RS00035	0.65	+0.0
9,637	-		DZA65_RS00035	0.65	+0.7
9,645	+		DZA65_RS00035	0.65	+1.3
9,645	+		DZA65_RS00035	0.65	+0.0
9,645	+		DZA65_RS00035	0.65	-1.7
9,645	+		DZA65_RS00035	0.65	+0.9
9,646	-		DZA65_RS00035	0.65	-1.4
9,646	-		DZA65_RS00035	0.65	-1.1
9,646	-		DZA65_RS00035	0.65	-0.0
9,646	-		DZA65_RS00035	0.65	-0.5
9,646	-				-0.1
9,646	-		DZA65_RS00035	0.65	-0.6
9,678	+		DZA65_RS00035	0.67	-1.1
9,678	+		DZA65_RS00035	0.67	-0.9
9,679	-		DZA65_RS00035	0.67	-0.9
9,679	-		DZA65_RS00035	0.67	-0.3
9,679	-		DZA65_RS00035	0.67	+0.2
9,679	-		DZA65_RS00035	0.67	+1.7
9,679	-		DZA65_RS00035	0.67	-0.3
9,679	-		DZA65_RS00035	0.67	-0.2
9,696	+		DZA65_RS00035	0.68	+0.3
9,696	+		DZA65_RS00035	0.68	-0.5
9,697	-		DZA65_RS00035	0.68	+0.2
9,697	-		DZA65_RS00035	0.68	-1.1
9,697	-		DZA65_RS00035	0.68	-2.1
9,785	-		DZA65_RS00035	0.72	+0.5
9,829	+		DZA65_RS00035	0.74	+0.3
9,829	+		DZA65_RS00035	0.74	+0.4
9,889	+		DZA65_RS00035	0.77	+1.6
9,996	+		DZA65_RS00035	0.83	+0.7
10,032	+		DZA65_RS00035	0.84	+0.2
10,032	+		DZA65_RS00035	0.84	+1.9
10,032	+		DZA65_RS00035	0.84	-1.4
10,032	+		DZA65_RS00035	0.84	-1.1
10,033	-		DZA65_RS00035	0.84	-0.1
10,033	-		DZA65_RS00035	0.84	+1.5
10,033	-		DZA65_RS00035	0.84	-0.1
10,033	-		DZA65_RS00035	0.84	-1.6
10,033	-		DZA65_RS00035	0.84	-0.1
10,033	-		DZA65_RS00035	0.84	+0.2
10,060	+		DZA65_RS00035	0.86	+0.1
10,061	-		DZA65_RS00035	0.86	-1.7
10,061	-		DZA65_RS00035	0.86	-1.0
10,061	-		DZA65_RS00035	0.86	+0.8
10,065	+				-2.1
10,065	+		DZA65_RS00035	0.86	-0.1
10,065	+		DZA65_RS00035	0.86	+0.4
10,066	-		DZA65_RS00035	0.86	-0.3
10,066	-		DZA65_RS00035	0.86	-0.1
10,066	-		DZA65_RS00035	0.86	-1.2
10,066	-		DZA65_RS00035	0.86	-0.9
10,324	+				-2.1
10,337	+				-0.4
10,337	+				-0.8
10,337	+				-1.1
10,337	+				-0.7
10,337	+				+0.3
10,338	-				-0.5
10,338	-				+0.4
10,338	-				+0.2
10,338	-				+0.7
10,338	-				-0.1
10,338	-				+1.0
10,383	+				+1.8
10,383	+				-0.5
10,383	+				+0.9
10,383	+				-0.1
10,383	+				-0.4
10,384	-				+0.3
10,384	-				-0.1
10,384	-				-0.7
10,384	-				-0.7
10,384	-				-1.1
10,384	-				-1.1
10,384	-				-1.9
10,396	-				+1.1
10,396	-				+0.0
10,396	-				-0.4
10,435	+				-1.5
10,436	-				+1.1
10,498	+				-2.3
10,498	+				-1.4
10,511	+				-1.4
10,511	+				-0.1
10,512	-				-0.4
10,513	+				+0.6
10,514	-				-0.5
10,523	-				-0.2
10,559	+		DZA65_RS00040	0.22	-1.1
10,678	+		DZA65_RS00040	0.64	-0.4
10,678	+		DZA65_RS00040	0.64	-3.0
10,678	+		DZA65_RS00040	0.64	+0.0
10,679	-		DZA65_RS00040	0.64	-1.6
10,679	-		DZA65_RS00040	0.64	-1.9
10,702	+		DZA65_RS00040	0.72	-2.9
10,702	+		DZA65_RS00040	0.72	+0.3
10,703	-		DZA65_RS00040	0.72	-0.1
10,703	-		DZA65_RS00040	0.72	-2.8
10,703	-		DZA65_RS00040	0.72	-0.9
10,703	-		DZA65_RS00040	0.72	+0.4
10,703	-		DZA65_RS00040	0.72	+0.6
10,758	-				+0.9
10,807	+				-0.4
10,858	+				-0.2
10,858	+				-0.1
10,879	-				-2.7
10,879	-				-1.3
10,899	+				-0.4
10,899	+				+0.9
10,899	+				+0.3
10,899	+				+2.2
10,899	+				+1.5
10,900	-				-1.1
10,900	-				+0.2
10,900	-				+1.4
10,901	+				-4.1
10,901	+				-0.7
10,901	+				-0.1
10,901	+				-2.1
10,901	+				-0.7
10,901	+				-1.7
10,901	+				+0.4
10,901	+				-0.1
10,901	+				+0.3
10,901	+				+0.9
10,901	+				-0.0
10,902	-				-0.3
10,902	-				-0.1
10,902	-				-1.4
10,902	-				-0.7
10,902	-				-0.2
10,902	-				-0.4
10,902	-				-0.3
10,902	-				-0.1
10,902	-				+0.1
10,902	-				-0.4
10,902	-				-0.5
10,902	-				-0.1
10,904	+				-1.4
10,904	+				-1.4
10,904	+				-1.9
10,904	+				+3.4
10,905	-				-2.7
10,953	+				+1.1
10,953	+				-1.7
10,953	+				+0.4
10,953	+				+2.2
10,953	+				+0.3
10,954	-				+1.3
10,954	-				-2.2
10,954	-				-1.0
10,954	-				+0.2
10,964	-				-1.8
11,065	+		DZA65_RS00045	0.13	-1.0
11,066	-		DZA65_RS00045	0.13	-0.2
11,066	-		DZA65_RS00045	0.13	+1.4
11,066	-		DZA65_RS00045	0.13	-0.1
11,066	-		DZA65_RS00045	0.13	+3.0
11,066	-		DZA65_RS00045	0.13	+1.4
11,074	-		DZA65_RS00045	0.14	+0.9
11,134	+		DZA65_RS00045	0.21	-0.2
11,134	+		DZA65_RS00045	0.21	-1.4
11,134	+		DZA65_RS00045	0.21	+1.5
11,194	+		DZA65_RS00045	0.28	+0.5
11,194	+		DZA65_RS00045	0.28	-1.1
11,194	+		DZA65_RS00045	0.28	+2.2
11,194	+		DZA65_RS00045	0.28	-2.0
11,194	+		DZA65_RS00045	0.28	-0.2
11,194	+		DZA65_RS00045	0.28	-0.3
11,194	+		DZA65_RS00045	0.28	+0.5
11,194	+		DZA65_RS00045	0.28	+0.9
11,194	+		DZA65_RS00045	0.28	-0.4
11,194	+		DZA65_RS00045	0.28	-2.1
11,194	+		DZA65_RS00045	0.28	+1.2
11,194	+		DZA65_RS00045	0.28	-0.8
11,195	-		DZA65_RS00045	0.29	+0.7
11,195	-		DZA65_RS00045	0.29	+2.1
11,195	-		DZA65_RS00045	0.29	-2.4
11,195	-		DZA65_RS00045	0.29	-0.9
11,195	-		DZA65_RS00045	0.29	+1.9
11,195	-		DZA65_RS00045	0.29	-0.7
11,195	-		DZA65_RS00045	0.29	+0.9
11,195	-		DZA65_RS00045	0.29	-1.1
11,215	+		DZA65_RS00045	0.31	-1.4
11,216	-		DZA65_RS00045	0.31	+1.5
11,216	-		DZA65_RS00045	0.31	-3.0
11,216	-		DZA65_RS00045	0.31	+0.5
11,216	-		DZA65_RS00045	0.31	-0.7
11,217	+		DZA65_RS00045	0.31	-2.3
11,217	+		DZA65_RS00045	0.31	+1.4
11,217	+		DZA65_RS00045	0.31	+1.3
11,218	-		DZA65_RS00045	0.31	-0.3
11,239	+		DZA65_RS00045	0.34	-0.6
11,240	-		DZA65_RS00045	0.34	+2.1
11,240	-		DZA65_RS00045	0.34	-0.7
11,452	+		DZA65_RS00045	0.59	-0.3
11,453	-		DZA65_RS00045	0.59	+1.4
11,562	+		DZA65_RS00045	0.72	+2.5
11,562	+		DZA65_RS00045	0.72	+0.3
11,562	+		DZA65_RS00045	0.72	-0.7
11,562	+		DZA65_RS00045	0.72	-1.3
11,562	+		DZA65_RS00045	0.72	-0.1
11,562	+		DZA65_RS00045	0.72	-1.3
11,563	-		DZA65_RS00045	0.72	-2.3
11,563	-		DZA65_RS00045	0.72	+0.9
11,563	-		DZA65_RS00045	0.72	-1.4
11,563	-		DZA65_RS00045	0.72	+1.3
11,592	+		DZA65_RS00045	0.76	+0.2
11,607	+		DZA65_RS00045	0.77	+1.3
11,767	-				+2.2