Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20200

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,375,623	+		DZA65_RS20190	0.52	+0.9
4,375,623	+		DZA65_RS20190	0.52	-2.2
4,375,623	+		DZA65_RS20190	0.52	+1.1
4,375,623	+		DZA65_RS20190	0.52	-0.7
4,375,637	-		DZA65_RS20190	0.55	-0.2
4,375,637	-		DZA65_RS20190	0.55	+1.8
4,375,637	-		DZA65_RS20190	0.55	+1.7
4,375,637	-		DZA65_RS20190	0.55	-1.5
4,375,637	-		DZA65_RS20190	0.55	+0.9
4,375,706	-		DZA65_RS20190	0.73	-1.5
4,375,706	-		DZA65_RS20190	0.73	+0.1
4,375,978	+		DZA65_RS20195	0.42	-0.2
4,375,978	+		DZA65_RS20195	0.42	+1.1
4,375,978	+		DZA65_RS20195	0.42	-0.5
4,375,979	-		DZA65_RS20195	0.42	-1.2
4,375,979	-		DZA65_RS20195	0.42	+0.6
4,375,979	-		DZA65_RS20195	0.42	+1.9
4,375,979	-		DZA65_RS20195	0.42	+2.7
4,375,979	-		DZA65_RS20195	0.42	+2.4
4,376,070	+		DZA65_RS20195	0.68	+1.4
4,376,071	-		DZA65_RS20195	0.68	-0.0
4,376,071	-		DZA65_RS20195	0.68	-1.2
4,376,128	+		DZA65_RS20195	0.84	-2.3
4,376,128	+		DZA65_RS20195	0.84	+1.4
4,376,160	+				+0.0
4,376,160	+				+1.4
4,376,161	-				+1.5
4,376,174	+				-0.7
4,376,174	+				-1.2
4,376,174	+				-0.4
4,376,174	+				-0.9
4,376,175	-				+0.4
4,376,175	-				+0.8
4,376,182	+				+0.7
4,376,182	+				+0.2
4,376,182	+				-2.9
4,376,182	+				+0.5
4,376,182	+				-0.3
4,376,182	+				-0.3
4,376,182	+				-0.6
4,376,182	+				-1.9
4,376,182	+				-0.2
4,376,182	+				-1.9
4,376,183	-				+0.8
4,376,183	-				+1.5
4,376,183	-				+0.5
4,376,183	-				+2.1
4,376,183	-				+1.0
4,376,183	-				+1.1
4,376,183	-				+0.7
4,376,183	-				+0.9
4,376,183	-				+1.5
4,376,183	-				-2.3
4,376,190	+				+0.5
4,376,190	+				-0.2
4,376,190	+				+0.8
4,376,230	+				+0.4
4,376,230	+				-1.9
4,376,231	-				-2.6
4,376,231	-				-1.7
4,376,273	+				+0.7
4,376,273	+				-0.3
4,376,273	+				-0.1
4,376,273	+				+3.1
4,376,274	-				-1.2
4,376,274	-				+0.1
4,376,274	-				+0.1
4,376,290	+				+1.1
4,376,325	-				-1.7
4,376,342	+				+0.5
4,376,342	+				-0.5
4,376,343	-				-0.6
4,376,343	-				-1.7
4,376,343	-				+1.7
4,376,343	-				+0.6
4,376,359	+				-1.2
4,376,359	+				+1.1
4,376,360	-				+1.1
4,376,394	+				+0.6
4,376,394	+				+1.1
4,376,395	-				-0.2
4,376,395	-				-1.0
4,376,395	-				-0.6
4,376,444	-				+0.7
4,376,458	+				-0.9
4,376,458	+				-0.5
4,376,458	+				-0.6
4,376,458	+				-0.7
4,376,459	-				+2.5
4,376,459	-				+0.0
4,376,480	+				-0.9
4,376,480	+				-1.4
4,376,480	+				-0.0
4,376,519	+				+2.1
4,376,520	-				+0.4
4,376,525	+				+0.1
4,376,525	+				+1.5
4,376,545	-				+0.1
4,376,570	-				+0.3
4,376,601	+		DZA65_RS20200	0.18	+0.1
4,376,601	+		DZA65_RS20200	0.18	-0.9
4,376,601	+		DZA65_RS20200	0.18	+1.5
4,376,601	+		DZA65_RS20200	0.18	-0.9
4,376,602	-		DZA65_RS20200	0.19	+0.2
4,376,602	-		DZA65_RS20200	0.19	-0.2
4,376,602	-		DZA65_RS20200	0.19	-0.4
4,376,603	+		DZA65_RS20200	0.19	-0.6
4,376,604	-		DZA65_RS20200	0.19	+0.9
4,376,604	-		DZA65_RS20200	0.19	+2.1
4,376,631	+		DZA65_RS20200	0.27	+0.1
4,376,631	+		DZA65_RS20200	0.27	+0.5
4,376,664	+		DZA65_RS20200	0.36	+0.5
4,376,665	-		DZA65_RS20200	0.36	-0.1
4,376,668	+		DZA65_RS20200	0.37	+0.3
4,376,668	+		DZA65_RS20200	0.37	+0.1
4,376,669	-		DZA65_RS20200	0.38	+0.8
4,376,669	-		DZA65_RS20200	0.38	-0.6
4,376,669	-		DZA65_RS20200	0.38	+0.9
4,376,718	+		DZA65_RS20200	0.51	-0.4
4,376,719	-		DZA65_RS20200	0.52	-1.0
4,376,745	-		DZA65_RS20200	0.59	+1.5
4,376,758	+		DZA65_RS20200	0.63	-0.5
4,376,758	+		DZA65_RS20200	0.63	-0.6
4,376,758	+		DZA65_RS20200	0.63	+1.0
4,376,793	+		DZA65_RS20200	0.73	-0.5
4,376,793	+		DZA65_RS20200	0.73	+1.3
4,376,793	+		DZA65_RS20200	0.73	-0.4
4,376,793	+		DZA65_RS20200	0.73	-0.8
4,376,793	+		DZA65_RS20200	0.73	-0.5
4,376,794	-		DZA65_RS20200	0.73	-0.6
4,376,822	+		DZA65_RS20200	0.81	+1.4
4,376,838	+		DZA65_RS20200	0.85	-0.9
4,376,838	+		DZA65_RS20200	0.85	+0.5
4,376,838	+		DZA65_RS20200	0.85	-0.8
4,376,838	+		DZA65_RS20200	0.85	-1.3
4,376,839	-		DZA65_RS20200	0.86	+0.7
4,376,839	-		DZA65_RS20200	0.86	+0.4
4,376,842	+		DZA65_RS20200	0.86	+0.5
4,376,842	+		DZA65_RS20200	0.86	-0.3
4,376,842	+		DZA65_RS20200	0.86	+0.5
4,376,842	+		DZA65_RS20200	0.86	+0.8
4,376,842	+		DZA65_RS20200	0.86	+0.7
4,376,843	-		DZA65_RS20200	0.87	-0.1
4,376,843	-		DZA65_RS20200	0.87	+0.4
4,376,843	-		DZA65_RS20200	0.87	-0.5
4,376,843	-		DZA65_RS20200	0.87	+0.1
4,376,843	-		DZA65_RS20200	0.87	-0.6
4,376,843	-		DZA65_RS20200	0.87	+0.5
4,376,843	-		DZA65_RS20200	0.87	-2.5
4,376,843	-		DZA65_RS20200	0.87	+0.3
4,376,843	-		DZA65_RS20200	0.87	-0.1
4,376,843	-		DZA65_RS20200	0.87	-0.9
4,376,843	-		DZA65_RS20200	0.87	-0.2
4,376,843	-		DZA65_RS20200	0.87	+0.7
4,376,843	-		DZA65_RS20200	0.87	-0.2
4,376,843	-		DZA65_RS20200	0.87	-0.1
4,376,889	+				+0.9
4,376,889	+				+0.6
4,376,889	+				+1.1
4,376,889	+				-0.3
4,376,889	+				+1.3
4,376,890	-				-0.5
4,376,890	-				+0.5
4,376,890	-				+1.1
4,376,890	-				+3.4
4,376,890	-				+0.5
4,376,918	+				+1.6
4,376,918	+				-1.7
4,376,919	-				+0.4
4,376,919	-				-1.2
4,376,921	+				-1.2
4,376,921	+				+1.6
4,376,921	+				+0.6
4,376,921	+				+0.3
4,376,921	+				+3.1
4,376,922	-				+0.1
4,376,922	-				-0.2
4,376,940	+				-0.1
4,376,941	-				-0.9
4,376,997	+				-0.5
4,376,997	+				+2.6
4,376,998	-				+0.6
4,376,998	-				+0.1
4,377,010	-				-1.4
4,377,047	-				-1.9
4,377,047	-				-1.1
4,377,671	-				-0.7
4,377,676	+				-1.2
4,377,676	+				-1.5
4,377,677	-				-0.9