Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18900

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,081,583	+				+1.3
4,081,584	-				-1.8
4,081,584	-				-0.8
4,081,626	+				-1.0
4,081,627	-				+0.4
4,081,656	-				-0.4
4,081,677	+				+0.7
4,081,677	+				+2.0
4,081,678	-				+0.0
4,081,678	-				+0.0
4,081,678	-				+1.1
4,081,685	+				+1.6
4,081,685	+				+0.3
4,081,685	+				-1.0
4,081,685	+				+1.2
4,081,685	+				+0.0
4,081,686	-				+0.8
4,081,701	+				-1.6
4,081,702	-				-0.9
4,081,834	+				-1.0
4,081,834	+				-1.6
4,081,834	+				+0.7
4,081,834	+				+1.4
4,081,834	+				-0.4
4,081,834	+				-0.3
4,081,834	+				+0.4
4,081,834	+				+2.5
4,081,834	+				+0.5
4,081,834	+				+0.0
4,081,834	+				-0.4
4,081,834	+				-1.1
4,081,834	+				+1.2
4,081,834	+				-0.1
4,081,834	+				+0.2
4,081,834	+				-0.3
4,081,834	+				+0.5
4,081,835	-				-2.0
4,081,835	-				+0.6
4,081,835	-				-1.1
4,081,835	-				-0.3
4,081,835	-				+0.0
4,081,835	-				-0.4
4,081,835	-				+0.2
4,081,835	-				+0.2
4,081,835	-				+2.9
4,081,835	-				-0.6
4,081,835	-				+0.4
4,081,835	-				+0.2
4,081,835	-				-1.2
4,081,835	-				-0.6
4,081,835	-				-0.2
4,081,835	-				-0.8
4,081,835	-				+1.0
4,081,845	+				+1.3
4,081,845	+				-0.1
4,081,845	+				+2.4
4,081,845	+				-1.3
4,081,845	+				+0.3
4,081,845	+				-0.7
4,081,845	+				-0.7
4,081,845	+				-1.0
4,081,846	-				-0.6
4,081,846	-				+0.2
4,081,846	-				-0.5
4,081,846	-				+1.0
4,081,846	-				-0.4
4,081,846	-				+0.4
4,081,846	-				-1.2
4,081,846	-				-1.0
4,081,849	+				+0.3
4,081,849	+				-1.7
4,081,849	+				-1.0
4,081,849	+				+0.0
4,081,849	+				+1.2
4,081,849	+				+1.0
4,081,849	+				-1.3
4,081,849	+				+3.5
4,081,849	+				+1.6
4,081,849	+				-1.0
4,081,849	+				-0.3
4,081,849	+				-1.0
4,081,849	+				-1.3
4,081,850	-				-2.1
4,081,850	-				+2.3
4,081,850	-				-1.3
4,081,850	-				+1.5
4,081,850	-				+1.0
4,081,850	-				-0.6
4,081,850	-				-2.1
4,081,850	-				+1.0
4,081,850	-				-0.1
4,081,951	+		DZA65_RS18895	0.16	+0.2
4,081,952	-		DZA65_RS18895	0.16	+0.7
4,082,043	-		DZA65_RS18895	0.28	-0.6
4,082,128	+		DZA65_RS18895	0.40	+0.6
4,082,128	+		DZA65_RS18895	0.40	-0.6
4,082,129	-		DZA65_RS18895	0.40	+0.7
4,082,182	+		DZA65_RS18895	0.47	+0.7
4,082,241	+		DZA65_RS18895	0.55	+0.0
4,082,242	-		DZA65_RS18895	0.55	-1.8
4,082,242	-		DZA65_RS18895	0.55	+0.4
4,082,753	-		DZA65_RS18900	0.22	+0.4
4,082,753	-		DZA65_RS18900	0.22	-0.3
4,082,884	+		DZA65_RS18900	0.37	+1.7
4,082,884	+		DZA65_RS18900	0.37	-0.3
4,082,884	+		DZA65_RS18900	0.37	+1.0
4,082,884	+		DZA65_RS18900	0.37	+1.4
4,082,885	-		DZA65_RS18900	0.37	-0.3
4,082,885	-		DZA65_RS18900	0.37	-0.6
4,082,885	-		DZA65_RS18900	0.37	-1.3
4,083,047	-		DZA65_RS18900	0.56	-1.0
4,083,313	+		DZA65_RS18900	0.87	-1.8
4,083,314	-		DZA65_RS18900	0.87	-0.4
4,083,314	-		DZA65_RS18900	0.87	+1.0
4,083,314	-		DZA65_RS18900	0.87	-0.2
4,083,314	-		DZA65_RS18900	0.87	+1.1
4,083,314	-		DZA65_RS18900	0.87	+0.2
4,083,316	+		DZA65_RS18900	0.87	+0.3
4,083,316	+		DZA65_RS18900	0.87	-1.1
4,083,317	-		DZA65_RS18900	0.87	+1.0
4,083,357	+				+0.3
4,083,357	+				+0.0
4,083,358	-				-2.3
4,083,358	-				+1.3
4,083,358	-				+3.4
4,083,411	+				+1.0
4,083,411	+				+0.5
4,083,412	-				+0.1
4,083,752	-		DZA65_RS18905	0.33	+0.0
4,083,813	+		DZA65_RS18905	0.39	+0.9
4,083,813	+		DZA65_RS18905	0.39	-1.3
4,083,866	-		DZA65_RS18905	0.46	-0.1
4,083,866	-		DZA65_RS18905	0.46	+1.0
4,083,866	-		DZA65_RS18905	0.46	+0.4
4,083,943	+				-0.6
4,083,943	+		DZA65_RS18905	0.54	-1.3
4,083,943	+		DZA65_RS18905	0.54	-1.7
4,083,943	+		DZA65_RS18905	0.54	-0.2
4,083,943	+		DZA65_RS18905	0.54	-0.1
4,083,943	+		DZA65_RS18905	0.54	+1.5
4,083,943	+		DZA65_RS18905	0.54	+0.6
4,083,943	+		DZA65_RS18905	0.54	+1.0
4,083,943	+		DZA65_RS18905	0.54	+0.0
4,083,943	+		DZA65_RS18905	0.54	+1.0
4,083,943	+		DZA65_RS18905	0.54	+0.8
4,083,943	+		DZA65_RS18905	0.54	+1.9
4,083,944	-		DZA65_RS18905	0.54	-1.1
4,083,944	-		DZA65_RS18905	0.54	+1.4
4,083,944	-		DZA65_RS18905	0.54	+0.6
4,083,944	-		DZA65_RS18905	0.54	+0.5
4,083,944	-		DZA65_RS18905	0.54	+1.0
4,083,944	-		DZA65_RS18905	0.54	+1.0
4,083,956	+		DZA65_RS18905	0.56	+0.4
4,083,956	+		DZA65_RS18905	0.56	-2.7
4,083,956	+		DZA65_RS18905	0.56	+0.0
4,083,956	+		DZA65_RS18905	0.56	-0.7
4,083,957	-		DZA65_RS18905	0.56	+1.2
4,083,957	-		DZA65_RS18905	0.56	+0.1
4,083,957	-		DZA65_RS18905	0.56	+2.5
4,083,957	-		DZA65_RS18905	0.56	+0.6
4,083,957	-		DZA65_RS18905	0.56	+0.0
4,083,973	+		DZA65_RS18905	0.58	+1.0
4,083,973	+		DZA65_RS18905	0.58	+1.4
4,083,973	+		DZA65_RS18905	0.58	-0.1
4,083,973	+		DZA65_RS18905	0.58	-0.4
4,083,974	-		DZA65_RS18905	0.58	+0.8
4,084,045	+		DZA65_RS18905	0.66	+0.3
4,084,168	+		DZA65_RS18905	0.80	-1.2
4,084,168	+		DZA65_RS18905	0.80	-0.3
4,084,169	-		DZA65_RS18905	0.80	-1.8
4,084,169	-		DZA65_RS18905	0.80	-0.3
4,084,169	-				-1.6
4,084,211	+		DZA65_RS18905	0.85	+0.4
4,084,212	-		DZA65_RS18905	0.85	+0.6
4,084,291	+				-0.0
4,084,291	+				+1.0
4,084,291	+				-2.0
4,084,292	-				-2.0
4,084,292	-				-0.6
4,084,292	-				-1.8
4,084,292	-				+0.8
4,084,292	-				+0.8
4,084,292	-				-0.6
4,084,306	-				+0.0
4,084,342	+				+1.0
4,084,342	+				-0.8
4,084,342	+				+2.2
4,084,342	+				-1.6
4,084,342	+				+0.0
4,084,342	+				-0.6
4,084,342	+				+1.5
4,084,342	+				+0.6
4,084,342	+				+0.5
4,084,342	+				+0.6
4,084,343	-				-2.1
4,084,343	-				+1.5
4,084,343	-				+1.2
4,084,343	-				-1.6
4,084,343	-				-1.6