Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18345

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,956,400	-		DZA65_RS18335	0.80	-1.0
3,956,439	+		DZA65_RS18335	0.86	+0.9
3,956,439	+		DZA65_RS18335	0.86	-0.0
3,956,439	+		DZA65_RS18335	0.86	+0.7
3,956,439	+		DZA65_RS18335	0.86	+0.5
3,956,439	+		DZA65_RS18335	0.86	-1.0
3,956,440	-		DZA65_RS18335	0.86	+0.9
3,956,440	-		DZA65_RS18335	0.86	+2.3
3,956,440	-		DZA65_RS18335	0.86	+0.4
3,956,440	-		DZA65_RS18335	0.86	-0.8
3,956,503	+				+0.7
3,956,504	-				-0.0
3,956,529	+				+0.2
3,956,551	-				+0.3
3,956,551	-				+0.3
3,956,569	-				-0.8
3,956,582	+				-0.6
3,956,601	+				+0.4
3,956,620	-				-0.0
3,956,620	-				+0.4
3,956,630	-				+2.0
3,956,646	-				+2.0
3,956,646	-				-0.6
3,956,729	+		DZA65_RS18340	0.23	-0.2
3,956,730	-		DZA65_RS18340	0.23	+0.5
3,956,730	-		DZA65_RS18340	0.23	+0.7
3,956,749	+		DZA65_RS18340	0.28	-2.0
3,956,749	+		DZA65_RS18340	0.28	-0.2
3,956,749	+		DZA65_RS18340	0.28	+0.1
3,956,749	+		DZA65_RS18340	0.28	+1.4
3,956,749	+		DZA65_RS18340	0.28	-1.4
3,956,750	-		DZA65_RS18340	0.28	-2.6
3,956,750	-		DZA65_RS18340	0.28	-0.3
3,956,750	-		DZA65_RS18340	0.28	+0.2
3,956,750	-		DZA65_RS18340	0.28	+0.1
3,956,786	+		DZA65_RS18340	0.38	-1.7
3,956,786	+		DZA65_RS18340	0.38	-0.6
3,956,786	+		DZA65_RS18340	0.38	+1.4
3,956,787	-		DZA65_RS18340	0.38	-0.6
3,956,787	-		DZA65_RS18340	0.38	+0.3
3,956,787	-		DZA65_RS18340	0.38	-0.7
3,956,787	-		DZA65_RS18340	0.38	-1.2
3,956,787	-		DZA65_RS18340	0.38	+0.5
3,956,787	-		DZA65_RS18340	0.38	-0.4
3,956,792	+		DZA65_RS18340	0.40	-0.4
3,956,792	+		DZA65_RS18340	0.40	+1.0
3,956,792	+		DZA65_RS18340	0.40	+0.5
3,956,792	+		DZA65_RS18340	0.40	-2.0
3,956,793	-		DZA65_RS18340	0.40	+0.0
3,956,795	+		DZA65_RS18340	0.41	-0.7
3,956,796	-		DZA65_RS18340	0.41	-0.2
3,956,796	-		DZA65_RS18340	0.41	-0.4
3,956,796	-		DZA65_RS18340	0.41	-0.6
3,956,802	-		DZA65_RS18340	0.42	+0.2
3,956,802	-		DZA65_RS18340	0.42	-1.7
3,956,802	-		DZA65_RS18340	0.42	+0.7
3,956,804	+		DZA65_RS18340	0.43	-0.3
3,956,805	-		DZA65_RS18340	0.43	+1.8
3,956,876	+		DZA65_RS18340	0.62	-0.2
3,956,876	+		DZA65_RS18340	0.62	-1.4
3,956,876	+		DZA65_RS18340	0.62	-0.0
3,956,877	-		DZA65_RS18340	0.63	-0.8
3,956,877	-		DZA65_RS18340	0.63	-0.4
3,956,877	-		DZA65_RS18340	0.63	+2.1
3,956,879	+		DZA65_RS18340	0.63	-0.6
3,956,879	+		DZA65_RS18340	0.63	-0.8
3,956,879	+		DZA65_RS18340	0.63	-0.1
3,956,912	+		DZA65_RS18340	0.72	+1.0
3,956,912	+		DZA65_RS18340	0.72	-0.6
3,956,912	+		DZA65_RS18340	0.72	-0.4
3,956,912	+		DZA65_RS18340	0.72	+1.3
3,956,913	-		DZA65_RS18340	0.72	+1.8
3,956,913	-		DZA65_RS18340	0.72	+0.7
3,956,913	-		DZA65_RS18340	0.72	+0.4
3,956,913	-		DZA65_RS18340	0.72	+0.2
3,956,913	-		DZA65_RS18340	0.72	-2.6
3,956,974	+		DZA65_RS18340	0.89	+0.2
3,956,974	+		DZA65_RS18340	0.89	-0.4
3,956,974	+		DZA65_RS18340	0.89	-0.0
3,956,974	+		DZA65_RS18340	0.89	-0.0
3,956,974	+		DZA65_RS18340	0.89	-0.2
3,956,974	+		DZA65_RS18340	0.89	+0.2
3,956,974	+		DZA65_RS18340	0.89	+0.5
3,956,974	+		DZA65_RS18340	0.89	+0.4
3,956,974	+		DZA65_RS18340	0.89	-1.4
3,956,974	+		DZA65_RS18340	0.89	-0.4
3,956,975	-		DZA65_RS18340	0.89	-1.4
3,956,975	-		DZA65_RS18340	0.89	-0.2
3,956,975	-		DZA65_RS18340	0.89	-1.4
3,956,975	-		DZA65_RS18340	0.89	+0.2
3,956,975	-		DZA65_RS18340	0.89	-1.6
3,956,975	-		DZA65_RS18340	0.89	+0.1
3,956,975	-		DZA65_RS18340	0.89	+0.8
3,956,975	-		DZA65_RS18340	0.89	+2.0
3,956,975	-		DZA65_RS18340	0.89	-0.6
3,956,985	+				-1.8
3,956,985	+				+1.4
3,956,985	+				-1.3
3,956,985	+				+1.0
3,956,986	-				+0.4
3,956,999	-				-0.6
3,957,009	+				+1.4
3,957,009	+				+1.0
3,957,009	+				-1.6
3,957,009	+				-1.0
3,957,009	+				+1.1
3,957,022	-				+1.0
3,957,059	+				-0.2
3,957,059	+				+0.1
3,957,059	+				-1.0
3,957,059	+				-0.6
3,957,059	+				-1.8
3,957,059	+				+1.2
3,957,059	+				-0.3
3,957,059	+				-1.6
3,957,060	-				-1.2
3,957,060	-				-1.0
3,957,060	-				-0.0
3,957,060	-				+0.2
3,957,060	-				-0.8
3,957,061	+				+1.6
3,957,061	+				-1.6
3,957,061	+				-1.2
3,957,062	-				+0.4
3,957,062	-				+1.6
3,957,062	-				-2.5
3,957,062	-				+0.2
3,957,062	-				-0.4
3,957,103	-				-1.6
3,957,105	+				-0.0
3,957,106	-				+0.6
3,957,106	-				+0.5
3,957,108	+				-0.2
3,957,109	-				-0.8
3,957,109	-				-0.6
3,957,157	+				-1.7
3,957,158	-				+1.1
3,957,248	+				+0.4
3,957,249	-				-0.0
3,957,265	+				-0.6
3,957,266	-				-0.1
3,957,266	-				-0.5
3,957,266	-				+0.8
3,957,348	+		DZA65_RS18345	0.14	-0.6
3,957,349	-		DZA65_RS18345	0.14	-0.6
3,957,349	-		DZA65_RS18345	0.14	-0.2
3,957,362	+		DZA65_RS18345	0.16	-0.6
3,957,362	+		DZA65_RS18345	0.16	+1.0
3,957,362	+		DZA65_RS18345	0.16	+1.4
3,957,363	-		DZA65_RS18345	0.16	-1.4
3,957,363	-		DZA65_RS18345	0.16	-0.3
3,957,363	-		DZA65_RS18345	0.16	+1.0
3,957,364	+		DZA65_RS18345	0.16	-1.8
3,957,364	+		DZA65_RS18345	0.16	-0.5
3,957,364	+		DZA65_RS18345	0.16	-2.4
3,957,364	+		DZA65_RS18345	0.16	-0.0
3,957,364	+		DZA65_RS18345	0.16	-0.6
3,957,364	+		DZA65_RS18345	0.16	-0.0
3,957,364	+		DZA65_RS18345	0.16	+0.7
3,957,364	+		DZA65_RS18345	0.16	-2.2
3,957,364	+		DZA65_RS18345	0.16	-0.0
3,957,364	+		DZA65_RS18345	0.16	-0.7
3,957,364	+		DZA65_RS18345	0.16	-1.1
3,957,365	-		DZA65_RS18345	0.16	-0.0
3,957,365	-		DZA65_RS18345	0.16	-1.0
3,957,365	-		DZA65_RS18345	0.16	-1.4
3,957,365	-		DZA65_RS18345	0.16	-1.3
3,957,365	-		DZA65_RS18345	0.16	-0.0
3,957,365	-		DZA65_RS18345	0.16	-1.6
3,957,505	+		DZA65_RS18345	0.39	+1.3
3,957,505	+		DZA65_RS18345	0.39	-2.6
3,957,506	-		DZA65_RS18345	0.39	-0.8
3,957,711	+		DZA65_RS18345	0.72	-0.0
3,957,711	+		DZA65_RS18345	0.72	-0.9
3,957,711	+		DZA65_RS18345	0.72	-0.0
3,957,711	+		DZA65_RS18345	0.72	+0.5
3,957,712	-		DZA65_RS18345	0.72	-0.9
3,957,841	+				+1.4
3,957,842	-				-2.0
3,957,868	+				-1.4
3,957,869	-				-0.8
3,957,869	-				-0.2
3,957,869	-				-1.7
3,957,869	-				-0.0
3,957,896	+				+1.0
3,957,903	+				+1.0
3,957,904	-				-2.0
3,957,904	-				-0.4
3,957,904	-				+0.2
3,957,908	+				-0.0
3,957,923	+				+1.1
3,957,923	+				+3.0
3,957,923	+				+0.5
3,957,923	+				+0.1
3,957,923	+				+1.3
3,957,924	-				+1.1
3,957,924	-				-0.6
3,958,036	+				-2.4
3,958,036	+				-0.6
3,958,036	+				+0.1
3,958,036	+				-0.1
3,958,036	+				+2.0
3,958,036	+				-0.6
3,958,037	-				+0.5
3,958,037	-				+1.1
3,958,037	-				-0.0
3,958,037	-				+0.6
3,958,037	-				-0.5
3,958,037	-				+1.0
3,958,037	-				+0.4
3,958,037	-				+1.6
3,958,037	-				-0.8
3,958,037	-				-0.6
3,958,065	-				-0.8
3,958,065	-				+0.4
3,958,066	+				+0.3
3,958,066	+				+1.0
3,958,066	+				-1.4
3,958,066	+				+0.9
3,958,066	+				+1.0
3,958,066	+				+1.3
3,958,066	+				+0.8
3,958,066	+				+0.6
3,958,066	+				+1.0
3,958,067	-				-1.0
3,958,067	-				-0.5
3,958,067	-				+1.7
3,958,067	-				+2.5
3,958,067	-				+0.6
3,958,067	-				-0.0
3,958,067	-				-0.5
3,958,070	+				-1.0
3,958,070	+				-0.6
3,958,070	+				-1.0
3,958,070	+				+1.8
3,958,071	-				+0.2
3,958,071	-				-0.9
3,958,071	-				+0.4
3,958,071	-				+0.1
3,958,071	-				+0.4
3,958,071	-				+0.1
3,958,087	+				-2.9
3,958,087	+				-1.4
3,958,087	+				-0.8
3,958,089	+				+0.8
3,958,089	+				+1.3
3,958,089	+				+0.2
3,958,089	+				+1.0
3,958,089	+				+1.0
3,958,089	+				-0.5
3,958,089	+				-0.4
3,958,090	-				-0.6
3,958,090	-				+0.6
3,958,090	-				+0.1
3,958,090	-				+0.7
3,958,090	-				+0.4
3,958,090	-				+1.1
3,958,097	+				+1.0
3,958,097	+				+0.4
3,958,098	-				-0.3
3,958,098	-				-0.6
3,958,098	-				-0.6
3,958,098	-				+1.5
3,958,164	-				+2.5
3,958,258	-		DZA65_RS18350	0.21	+1.0
3,958,298	+		DZA65_RS18350	0.26	-0.0
3,958,299	-		DZA65_RS18350	0.27	-0.0
3,958,360	+		DZA65_RS18350	0.35	-0.8
3,958,361	-		DZA65_RS18350	0.35	+0.7
3,958,377	+		DZA65_RS18350	0.38	+0.4
3,958,378	-		DZA65_RS18350	0.38	-0.6
3,958,378	-		DZA65_RS18350	0.38	+0.1
3,958,378	-		DZA65_RS18350	0.38	-0.3
3,958,378	-		DZA65_RS18350	0.38	+0.2
3,958,490	+		DZA65_RS18350	0.54	+1.4
3,958,577	+		DZA65_RS18350	0.66	+0.4
3,958,604	+		DZA65_RS18350	0.70	-1.2
3,958,604	+		DZA65_RS18350	0.70	-0.6
3,958,709	+		DZA65_RS18350	0.84	+1.8
3,958,709	+		DZA65_RS18350	0.84	+1.7
3,958,710	-		DZA65_RS18350	0.85	-1.4
3,958,710	-		DZA65_RS18350	0.85	-0.0
3,958,719	+		DZA65_RS18350	0.86	-0.0
3,958,728	+		DZA65_RS18350	0.87	+1.5
3,958,728	+		DZA65_RS18350	0.87	+0.2
3,958,728	+		DZA65_RS18350	0.87	-1.2
3,958,728	+		DZA65_RS18350	0.87	+0.6
3,958,729	-		DZA65_RS18350	0.87	-1.4
3,958,729	-		DZA65_RS18350	0.87	-0.8
3,958,832	+				+0.4
3,958,832	+				-2.6
3,958,833	-				+0.4
3,958,833	-				+0.8
3,958,833	-				-1.0
3,958,833	-				+1.6
3,958,833	-				-0.3