Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17655

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,802,676	-				+1.3
3,802,676	-				+1.2
3,802,718	+				+1.2
3,802,718	+				-0.2
3,802,718	+				+0.1
3,802,718	+				+0.9
3,802,718	+				+0.8
3,802,719	-				+1.4
3,802,719	-				-1.1
3,802,731	+				+0.3
3,802,732	-				+0.7
3,802,819	+		DZA65_RS17650	0.12	-0.1
3,802,819	+		DZA65_RS17650	0.12	-0.7
3,802,819	+		DZA65_RS17650	0.12	+2.1
3,802,819	+		DZA65_RS17650	0.12	+0.0
3,802,819	+		DZA65_RS17650	0.12	+0.7
3,802,819	+		DZA65_RS17650	0.12	-0.6
3,802,819	+		DZA65_RS17650	0.12	+0.2
3,802,819	+		DZA65_RS17650	0.12	+1.1
3,802,819	+		DZA65_RS17650	0.12	+0.9
3,802,820	-		DZA65_RS17650	0.12	+0.9
3,802,820	-		DZA65_RS17650	0.12	+2.1
3,802,820	-		DZA65_RS17650	0.12	+1.6
3,802,820	-		DZA65_RS17650	0.12	+0.3
3,802,820	-		DZA65_RS17650	0.12	+0.1
3,802,820	-		DZA65_RS17650	0.12	+1.1
3,802,964	-		DZA65_RS17650	0.29	-0.7
3,802,983	+		DZA65_RS17650	0.32	+0.9
3,802,983	+		DZA65_RS17650	0.32	-0.5
3,802,983	+		DZA65_RS17650	0.32	-0.1
3,802,983	+		DZA65_RS17650	0.32	-1.1
3,802,983	+		DZA65_RS17650	0.32	-0.4
3,802,983	+		DZA65_RS17650	0.32	+0.9
3,802,984	-		DZA65_RS17650	0.32	-0.1
3,802,984	-		DZA65_RS17650	0.32	-1.7
3,802,984	-		DZA65_RS17650	0.32	+0.1
3,802,984	-		DZA65_RS17650	0.32	+1.3
3,803,025	+		DZA65_RS17650	0.37	+0.6
3,803,026	-		DZA65_RS17650	0.37	+1.6
3,803,094	-		DZA65_RS17650	0.45	+0.2
3,803,170	+		DZA65_RS17650	0.54	-1.2
3,803,170	+		DZA65_RS17650	0.54	-1.1
3,803,170	+		DZA65_RS17650	0.54	+0.4
3,803,170	+		DZA65_RS17650	0.54	-2.7
3,803,170	+		DZA65_RS17650	0.54	+0.7
3,803,170	+		DZA65_RS17650	0.54	-0.7
3,803,170	+		DZA65_RS17650	0.54	-1.4
3,803,170	+		DZA65_RS17650	0.54	+0.0
3,803,170	+		DZA65_RS17650	0.54	+0.9
3,803,171	-		DZA65_RS17650	0.54	+1.2
3,803,171	-		DZA65_RS17650	0.54	+0.9
3,803,171	-		DZA65_RS17650	0.54	+0.4
3,803,171	-		DZA65_RS17650	0.54	-0.1
3,803,171	-		DZA65_RS17650	0.54	-0.4
3,803,171	-		DZA65_RS17650	0.54	+1.1
3,803,174	+		DZA65_RS17650	0.55	-0.8
3,803,174	+		DZA65_RS17650	0.55	-1.7
3,803,174	+		DZA65_RS17650	0.55	+1.3
3,803,174	+		DZA65_RS17650	0.55	-0.1
3,803,174	+		DZA65_RS17650	0.55	-1.7
3,803,174	+		DZA65_RS17650	0.55	+0.4
3,803,174	+		DZA65_RS17650	0.55	-0.1
3,803,174	+		DZA65_RS17650	0.55	+0.7
3,803,174	+		DZA65_RS17650	0.55	-1.1
3,803,174	+		DZA65_RS17650	0.55	-0.7
3,803,174	+		DZA65_RS17650	0.55	+1.3
3,803,174	+		DZA65_RS17650	0.55	-0.1
3,803,174	+		DZA65_RS17650	0.55	+0.4
3,803,174	+		DZA65_RS17650	0.55	-0.3
3,803,174	+		DZA65_RS17650	0.55	+0.6
3,803,174	+		DZA65_RS17650	0.55	-0.1
3,803,175	-		DZA65_RS17650	0.55	+0.1
3,803,175	-		DZA65_RS17650	0.55	-1.7
3,803,175	-		DZA65_RS17650	0.55	-0.8
3,803,175	-		DZA65_RS17650	0.55	-0.4
3,803,230	+		DZA65_RS17650	0.61	+0.2
3,803,231	-		DZA65_RS17650	0.61	-1.9
3,803,231	-		DZA65_RS17650	0.61	-1.7
3,803,278	+		DZA65_RS17650	0.67	-0.1
3,803,279	-		DZA65_RS17650	0.67	+0.6
3,803,306	+		DZA65_RS17650	0.71	+0.1
3,803,307	-		DZA65_RS17650	0.71	+0.2
3,803,355	+		DZA65_RS17650	0.76	-1.4
3,803,355	+		DZA65_RS17650	0.76	-0.3
3,803,355	+		DZA65_RS17650	0.76	+0.2
3,803,355	+		DZA65_RS17650	0.76	+2.2
3,803,356	-		DZA65_RS17650	0.77	-0.3
3,803,443	+		DZA65_RS17650	0.87	-0.1
3,803,444	-		DZA65_RS17650	0.87	-0.1
3,803,629	+				+0.9
3,803,630	-				-1.7
3,803,630	-				+0.2
3,803,650	+				+1.8
3,803,650	+				-1.1
3,803,651	-				-1.1
3,803,651	-				+0.2
3,803,651	-				+0.1
3,803,780	+		DZA65_RS17655	0.62	+0.1
3,803,780	+		DZA65_RS17655	0.62	-0.1
3,803,780	+		DZA65_RS17655	0.62	-0.5
3,803,780	+		DZA65_RS17655	0.62	-1.9
3,803,781	-		DZA65_RS17655	0.63	-0.6
3,803,781	-		DZA65_RS17655	0.63	-0.1
3,803,784	+		DZA65_RS17655	0.64	+2.2
3,803,784	+		DZA65_RS17655	0.64	-1.5
3,803,784	+		DZA65_RS17655	0.64	-0.8
3,803,784	+		DZA65_RS17655	0.64	-0.4
3,803,784	+		DZA65_RS17655	0.64	+2.4
3,803,784	+		DZA65_RS17655	0.64	+0.9
3,803,784	+		DZA65_RS17655	0.64	-0.5
3,803,784	+		DZA65_RS17655	0.64	-1.2
3,803,784	+		DZA65_RS17655	0.64	+0.0
3,803,784	+		DZA65_RS17655	0.64	-0.7
3,803,784	+		DZA65_RS17655	0.64	-1.1
3,803,784	+		DZA65_RS17655	0.64	-1.4
3,803,785	-		DZA65_RS17655	0.65	+0.9
3,803,785	-		DZA65_RS17655	0.65	+0.9
3,803,785	-		DZA65_RS17655	0.65	-0.1
3,803,785	-		DZA65_RS17655	0.65	+0.9
3,803,785	-		DZA65_RS17655	0.65	-1.1
3,803,785	-		DZA65_RS17655	0.65	-0.3
3,803,785	-		DZA65_RS17655	0.65	-0.7
3,803,887	-				-1.1
3,803,895	+				-1.5
3,803,906	-				-1.0
3,803,923	+				+0.6
3,803,923	+				-0.6
3,803,923	+				+0.9
3,803,926	+				-0.5
3,803,926	+				+1.2
3,803,927	-				-2.8
3,803,931	-				+0.3
3,803,935	+				+0.4
3,803,935	+				+0.7
3,803,935	+				+0.3
3,803,935	+				+1.1
3,803,935	+				-0.7
3,803,936	-				+1.9
3,803,936	-				-0.1
3,804,000	+				-1.2
3,804,001	-				+1.3
3,804,001	-				+1.4
3,804,004	-				-0.1
3,804,004	-				+0.9
3,804,014	+				+0.9
3,804,015	-				-0.5
3,804,019	-				-0.9
3,804,019	-				+0.3
3,804,054	+				+0.6
3,804,081	-				-0.9
3,804,145	+		DZA65_RS17660	0.10	+1.2
3,804,163	+		DZA65_RS17660	0.12	-0.1
3,804,163	+		DZA65_RS17660	0.12	-0.1
3,804,164	-		DZA65_RS17660	0.12	+0.3
3,804,166	+		DZA65_RS17660	0.12	-1.4
3,804,240	-		DZA65_RS17660	0.17	-1.7
3,804,260	+		DZA65_RS17660	0.19	+1.5
3,804,264	+		DZA65_RS17660	0.19	+1.1
3,804,264	+		DZA65_RS17660	0.19	+0.3
3,804,266	+		DZA65_RS17660	0.19	+0.4
3,804,285	-				-0.1
3,804,285	-		DZA65_RS17660	0.21	+0.9
3,804,340	+		DZA65_RS17660	0.25	-0.7
3,804,341	-		DZA65_RS17660	0.25	-2.2
3,804,341	-		DZA65_RS17660	0.25	-1.1
3,804,341	-		DZA65_RS17660	0.25	+0.2
3,804,341	-		DZA65_RS17660	0.25	-0.7
3,804,374	-		DZA65_RS17660	0.28	+0.5
3,804,380	+		DZA65_RS17660	0.28	-1.1
3,804,384	+		DZA65_RS17660	0.28	-0.7
3,804,385	-		DZA65_RS17660	0.28	+0.0
3,804,441	-		DZA65_RS17660	0.33	+1.6
3,804,456	+		DZA65_RS17660	0.34	-1.0
3,804,509	-		DZA65_RS17660	0.38	+1.9
3,804,525	+		DZA65_RS17660	0.39	+0.2
3,804,526	-		DZA65_RS17660	0.39	+0.3
3,804,527	+		DZA65_RS17660	0.39	+0.9
3,804,527	+		DZA65_RS17660	0.39	-2.1
3,804,528	-		DZA65_RS17660	0.39	+0.3
3,804,528	-		DZA65_RS17660	0.39	-1.1
3,804,535	+		DZA65_RS17660	0.40	+0.7
3,804,535	+		DZA65_RS17660	0.40	-0.3
3,804,536	-		DZA65_RS17660	0.40	-0.1
3,804,536	-		DZA65_RS17660	0.40	+0.7
3,804,571	+		DZA65_RS17660	0.42	-0.5
3,804,590	+		DZA65_RS17660	0.44	-0.2
3,804,590	+		DZA65_RS17660	0.44	-1.9
3,804,768	-		DZA65_RS17660	0.57	-0.7
3,804,803	-		DZA65_RS17660	0.60	-0.1
3,804,808	+		DZA65_RS17660	0.60	+0.5
3,804,809	-		DZA65_RS17660	0.60	-0.1
3,804,817	+		DZA65_RS17660	0.61	-2.7
3,804,817	+		DZA65_RS17660	0.61	+0.3