Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17265

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,722,401	-				+1.2
3,722,440	-				-1.1
3,722,445	+				+1.5
3,722,446	-				-1.9
3,722,489	+				+1.5
3,722,490	-				+0.6
3,722,561	+		DZA65_RS17260	0.19	-2.1
3,722,562	-		DZA65_RS17260	0.19	-0.7
3,722,562	-		DZA65_RS17260	0.19	+1.2
3,722,562	-		DZA65_RS17260	0.19	+0.6
3,722,562	-		DZA65_RS17260	0.19	-0.1
3,722,575	+		DZA65_RS17260	0.21	-0.7
3,722,575	+		DZA65_RS17260	0.21	+0.6
3,722,575	+		DZA65_RS17260	0.21	+0.0
3,722,576	-		DZA65_RS17260	0.21	-0.5
3,722,576	-		DZA65_RS17260	0.21	+0.8
3,722,576	-		DZA65_RS17260	0.21	-1.8
3,722,576	-		DZA65_RS17260	0.21	+0.4
3,722,576	-		DZA65_RS17260	0.21	-0.4
3,722,629	+		DZA65_RS17260	0.28	+0.2
3,722,629	+		DZA65_RS17260	0.28	-0.2
3,722,629	+		DZA65_RS17260	0.28	+2.5
3,722,629	+		DZA65_RS17260	0.28	-1.1
3,722,629	+		DZA65_RS17260	0.28	-0.8
3,722,629	+		DZA65_RS17260	0.28	-0.1
3,722,630	-		DZA65_RS17260	0.28	-1.1
3,722,630	-		DZA65_RS17260	0.28	-0.6
3,722,630	-		DZA65_RS17260	0.28	+1.9
3,722,630	-		DZA65_RS17260	0.28	+1.3
3,722,634	+		DZA65_RS17260	0.29	+1.2
3,722,634	+		DZA65_RS17260	0.29	-2.1
3,722,634	+		DZA65_RS17260	0.29	+1.3
3,722,634	+		DZA65_RS17260	0.29	-0.7
3,722,634	+		DZA65_RS17260	0.29	-1.4
3,722,634	+		DZA65_RS17260	0.29	+0.2
3,722,634	+		DZA65_RS17260	0.29	-0.3
3,722,634	+		DZA65_RS17260	0.29	+0.7
3,722,634	+		DZA65_RS17260	0.29	-0.1
3,722,635	-		DZA65_RS17260	0.29	+0.8
3,722,635	-		DZA65_RS17260	0.29	+0.2
3,722,635	-		DZA65_RS17260	0.29	+1.0
3,722,635	-		DZA65_RS17260	0.29	+0.4
3,722,635	-		DZA65_RS17260	0.29	+0.4
3,722,635	-		DZA65_RS17260	0.29	+1.5
3,722,635	-		DZA65_RS17260	0.29	-1.1
3,722,635	-		DZA65_RS17260	0.29	+0.9
3,722,635	-		DZA65_RS17260	0.29	+0.8
3,722,635	-		DZA65_RS17260	0.29	+2.1
3,722,635	-		DZA65_RS17260	0.29	-0.1
3,722,635	-		DZA65_RS17260	0.29	+0.4
3,722,635	-		DZA65_RS17260	0.29	+0.2
3,722,635	-		DZA65_RS17260	0.29	-0.7
3,722,638	+		DZA65_RS17260	0.29	-0.1
3,722,638	+		DZA65_RS17260	0.29	+1.6
3,722,638	+		DZA65_RS17260	0.29	+1.4
3,722,638	+		DZA65_RS17260	0.29	-1.4
3,722,638	+		DZA65_RS17260	0.29	+1.1
3,722,638	+				-0.4
3,722,638	+		DZA65_RS17260	0.29	+0.4
3,722,638	+		DZA65_RS17260	0.29	+2.2
3,722,638	+		DZA65_RS17260	0.29	+0.9
3,722,638	+		DZA65_RS17260	0.29	-1.3
3,722,638	+		DZA65_RS17260	0.29	+0.2
3,722,638	+		DZA65_RS17260	0.29	+3.7
3,722,638	+		DZA65_RS17260	0.29	-0.4
3,722,638	+		DZA65_RS17260	0.29	+1.5
3,722,638	+		DZA65_RS17260	0.29	+1.9
3,722,639	-		DZA65_RS17260	0.29	-0.1
3,722,639	-		DZA65_RS17260	0.29	+0.9
3,722,639	-		DZA65_RS17260	0.29	+0.1
3,722,639	-		DZA65_RS17260	0.29	+0.9
3,722,639	-		DZA65_RS17260	0.29	-0.7
3,722,639	-		DZA65_RS17260	0.29	+0.5
3,722,639	-		DZA65_RS17260	0.29	-0.1
3,722,646	+		DZA65_RS17260	0.30	-2.4
3,722,819	+		DZA65_RS17260	0.54	+0.0
3,722,819	+		DZA65_RS17260	0.54	-1.1
3,722,819	+		DZA65_RS17260	0.54	-1.4
3,722,820	-		DZA65_RS17260	0.54	-0.7
3,722,820	-		DZA65_RS17260	0.54	+0.1
3,722,820	-		DZA65_RS17260	0.54	-0.1
3,722,820	-		DZA65_RS17260	0.54	-0.3
3,722,820	-		DZA65_RS17260	0.54	-0.3
3,722,844	+		DZA65_RS17260	0.58	-1.1
3,722,844	+		DZA65_RS17260	0.58	-0.1
3,722,845	-		DZA65_RS17260	0.58	+0.9
3,722,845	-		DZA65_RS17260	0.58	-0.2
3,722,845	-		DZA65_RS17260	0.58	+0.4
3,722,845	-		DZA65_RS17260	0.58	-1.0
3,722,876	+		DZA65_RS17260	0.62	-2.1
3,722,877	-		DZA65_RS17260	0.62	-0.9
3,723,006	-		DZA65_RS17260	0.80	+0.2
3,723,006	-		DZA65_RS17260	0.80	-0.7
3,723,029	+		DZA65_RS17260	0.83	+0.5
3,723,029	+		DZA65_RS17260	0.83	+1.5
3,723,067	+		DZA65_RS17260	0.89	+0.9
3,723,075	+		DZA65_RS17260	0.90	+0.9
3,723,075	+		DZA65_RS17260	0.90	-1.1
3,723,075	+		DZA65_RS17260	0.90	-1.7
3,723,075	+		DZA65_RS17260	0.90	-0.7
3,723,075	+		DZA65_RS17260	0.90	+1.2
3,723,076	-				-0.5
3,723,076	-				-1.7
3,723,076	-				+0.1
3,723,076	-				+0.7
3,723,076	-				-1.2
3,723,076	-				+0.5
3,723,078	+				-0.1
3,723,078	+				+1.6
3,723,078	+				-1.1
3,723,079	-				+0.7
3,723,079	-				-0.3
3,723,079	-				+0.3
3,723,079	-				+0.5
3,723,079	-				+1.2
3,723,079	-				+0.2
3,723,079	-				-0.3
3,723,106	+				-1.1
3,723,106	+				-0.4
3,723,106	+				-0.3
3,723,106	+				-1.1
3,723,106	+				-1.4
3,723,107	-				+0.9
3,723,107	-				-1.9
3,723,107	-				+0.6
3,723,153	+				+0.1
3,723,153	+				+0.9
3,723,153	+				+1.2
3,723,153	+				+0.3
3,723,153	+				+0.5
3,723,154	-				+1.1
3,723,154	-				+1.9
3,723,154	-				+1.6
3,723,154	-				-0.4
3,723,154	-				-1.0
3,723,154	-				+0.3
3,723,154	-				-2.7
3,723,156	+				-1.1
3,723,157	-				+0.8
3,723,157	-				-0.9
3,723,170	+				+0.9
3,723,170	+				+0.4
3,723,194	+				+0.1
3,723,195	-				-0.1
3,723,203	+				-0.3
3,723,203	+				+0.4
3,723,203	+				-0.0
3,723,203	+				+1.9
3,723,203	+				-0.7
3,723,204	-				-1.0
3,723,204	-				+0.9
3,723,231	+				-0.7
3,723,231	+				-0.4
3,723,231	+				+0.4
3,723,231	+				-0.7
3,723,231	+				-0.1
3,723,231	+				-0.7
3,723,231	+				+2.1
3,723,231	+				-0.3
3,723,232	-				-0.7
3,723,232	-				-0.4
3,723,232	-				-1.2
3,723,232	-				-2.8
3,723,232	-				+0.6
3,723,232	-				-0.1
3,723,232	-				-1.3
3,723,338	+		DZA65_RS17265	0.19	+1.5
3,723,409	+		DZA65_RS17265	0.28	+0.1
3,723,455	+		DZA65_RS17265	0.34	-1.9
3,723,455	+		DZA65_RS17265	0.34	-0.8
3,723,455	+		DZA65_RS17265	0.34	+1.9
3,723,455	+		DZA65_RS17265	0.34	+0.9
3,723,455	+		DZA65_RS17265	0.34	+1.4
3,723,455	+		DZA65_RS17265	0.34	+0.5
3,723,455	+		DZA65_RS17265	0.34	-1.4
3,723,455	+		DZA65_RS17265	0.34	-2.5
3,723,455	+		DZA65_RS17265	0.34	-0.6
3,723,455	+		DZA65_RS17265	0.34	-0.7
3,723,455	+		DZA65_RS17265	0.34	+0.5
3,723,455	+		DZA65_RS17265	0.34	+0.1
3,723,455	+		DZA65_RS17265	0.34	-2.3
3,723,455	+		DZA65_RS17265	0.34	+0.3
3,723,455	+		DZA65_RS17265	0.34	-0.7
3,723,455	+		DZA65_RS17265	0.34	-0.7
3,723,455	+		DZA65_RS17265	0.34	-1.9
3,723,455	+		DZA65_RS17265	0.34	-0.3
3,723,455	+		DZA65_RS17265	0.34	-1.2
3,723,456	-		DZA65_RS17265	0.35	-2.3
3,723,456	-		DZA65_RS17265	0.35	+0.2
3,723,456	-		DZA65_RS17265	0.35	-1.2
3,723,456	-		DZA65_RS17265	0.35	+0.9
3,723,456	-		DZA65_RS17265	0.35	+0.8
3,723,456	-		DZA65_RS17265	0.35	-0.0
3,723,456	-		DZA65_RS17265	0.35	+0.4
3,723,456	-		DZA65_RS17265	0.35	+2.8
3,723,456	-		DZA65_RS17265	0.35	+1.2
3,723,456	-		DZA65_RS17265	0.35	-2.5
3,723,456	-		DZA65_RS17265	0.35	+1.7
3,723,456	-		DZA65_RS17265	0.35	+0.2
3,723,456	-		DZA65_RS17265	0.35	-0.1
3,723,456	-		DZA65_RS17265	0.35	-0.1
3,723,456	-		DZA65_RS17265	0.35	+1.6
3,723,456	-		DZA65_RS17265	0.35	+0.2
3,723,460	+		DZA65_RS17265	0.35	-0.7
3,723,460	+		DZA65_RS17265	0.35	+0.6
3,723,460	+		DZA65_RS17265	0.35	-0.2
3,723,460	+		DZA65_RS17265	0.35	-0.2
3,723,461	-		DZA65_RS17265	0.35	-1.1
3,723,475	+		DZA65_RS17265	0.37	-2.5
3,723,475	+		DZA65_RS17265	0.37	-0.4
3,723,475	+		DZA65_RS17265	0.37	+1.3
3,723,476	-				-0.3
3,723,476	-		DZA65_RS17265	0.37	+0.1
3,723,479	+		DZA65_RS17265	0.38	+0.3
3,723,480	-		DZA65_RS17265	0.38	-0.6
3,723,524	+		DZA65_RS17265	0.44	-1.4
3,723,524	+		DZA65_RS17265	0.44	-0.3
3,723,525	-		DZA65_RS17265	0.44	+0.1
3,723,536	+		DZA65_RS17265	0.45	+0.9
3,723,537	-		DZA65_RS17265	0.45	+1.1
3,723,548	+		DZA65_RS17265	0.47	-1.1
3,723,548	+		DZA65_RS17265	0.47	-0.1
3,723,548	+		DZA65_RS17265	0.47	+0.3
3,723,548	+		DZA65_RS17265	0.47	-0.1
3,723,548	+		DZA65_RS17265	0.47	-1.1
3,723,548	+		DZA65_RS17265	0.47	+1.4
3,723,548	+		DZA65_RS17265	0.47	-2.1
3,723,549	-		DZA65_RS17265	0.47	-0.9
3,723,549	-		DZA65_RS17265	0.47	-1.1
3,723,549	-		DZA65_RS17265	0.47	-0.3
3,723,549	-		DZA65_RS17265	0.47	+0.4
3,723,549	-		DZA65_RS17265	0.47	-0.1
3,723,558	+		DZA65_RS17265	0.48	-0.8
3,723,558	+		DZA65_RS17265	0.48	+0.1
3,723,558	+		DZA65_RS17265	0.48	-0.1
3,723,558	+		DZA65_RS17265	0.48	-1.4
3,723,558	+		DZA65_RS17265	0.48	+0.9
3,723,559	-		DZA65_RS17265	0.48	-1.5
3,723,580	+		DZA65_RS17265	0.51	+0.7
3,723,580	+		DZA65_RS17265	0.51	+1.5
3,723,581	-				-0.7
3,723,614	+		DZA65_RS17265	0.55	-2.1
3,723,614	+		DZA65_RS17265	0.55	-1.9
3,723,614	+		DZA65_RS17265	0.55	+0.4
3,723,658	+		DZA65_RS17265	0.61	-2.1
3,723,659	-		DZA65_RS17265	0.61	-0.6
3,723,676	+		DZA65_RS17265	0.64	-0.4
3,723,676	+		DZA65_RS17265	0.64	+1.4
3,723,676	+		DZA65_RS17265	0.64	+0.3
3,723,676	+		DZA65_RS17265	0.64	-0.9
3,723,676	+		DZA65_RS17265	0.64	+0.9
3,723,676	+		DZA65_RS17265	0.64	+1.9
3,723,676	+		DZA65_RS17265	0.64	+0.3
3,723,676	+		DZA65_RS17265	0.64	+3.7
3,723,676	+		DZA65_RS17265	0.64	-0.3
3,723,676	+		DZA65_RS17265	0.64	-0.1
3,723,676	+		DZA65_RS17265	0.64	-1.5
3,723,676	+		DZA65_RS17265	0.64	-0.3
3,723,677	-		DZA65_RS17265	0.64	+0.9
3,723,677	-		DZA65_RS17265	0.64	+0.6
3,723,677	-		DZA65_RS17265	0.64	-1.3
3,723,677	-		DZA65_RS17265	0.64	-0.7
3,723,677	-		DZA65_RS17265	0.64	+0.2
3,723,677	-		DZA65_RS17265	0.64	-1.7
3,723,677	-		DZA65_RS17265	0.64	+1.5
3,723,677	-		DZA65_RS17265	0.64	-1.4
3,723,677	-		DZA65_RS17265	0.64	+0.1
3,723,694	-		DZA65_RS17265	0.66	-0.8
3,723,694	-		DZA65_RS17265	0.66	-1.7
3,723,701	-		DZA65_RS17265	0.67	+0.8
3,723,809	+		DZA65_RS17265	0.81	+0.8
3,723,810	-		DZA65_RS17265	0.81	-0.2
3,723,810	-		DZA65_RS17265	0.81	-0.3
3,723,810	-		DZA65_RS17265	0.81	-1.4
3,723,810	-		DZA65_RS17265	0.81	+0.9
3,723,884	+				+0.9
3,723,925	+				+0.9
3,723,964	-				+0.6
3,723,983	+				-0.9
3,724,000	+				-0.7
3,724,000	+				-0.7
3,724,000	+				-0.5
3,724,000	+				+0.3
3,724,001	-				+0.4
3,724,018	+				-0.7
3,724,018	+				-1.5
3,724,018	+				-1.1
3,724,018	+				+0.9
3,724,018	+				+1.1
3,724,018	+				-1.1
3,724,018	+				+1.2
3,724,018	+				+0.9
3,724,019	-				-0.5
3,724,019	-				-1.7
3,724,019	-				+0.5
3,724,019	-				+1.2
3,724,019	-				+0.3
3,724,019	-				-0.9
3,724,019	-				-1.2
3,724,019	-				-1.8
3,724,019	-				-0.2
3,724,019	-				-0.9
3,724,019	-				-1.7
3,724,019	-				-0.1
3,724,019	-				-1.9
3,724,020	+				-0.3
3,724,020	+				+1.4
3,724,020	+				-0.7
3,724,020	+				-0.7
3,724,020	+				+1.1
3,724,021	-				-1.2
3,724,021	-				-1.0
3,724,021	-				-0.1
3,724,041	+				+0.1
3,724,150	+				-1.1
3,724,151	-				+0.3
3,724,289	-		DZA65_RS17270	0.19	+0.9
3,724,289	-		DZA65_RS17270	0.19	-0.2
3,724,289	-		DZA65_RS17270	0.19	-0.4
3,724,306	+		DZA65_RS17270	0.20	-1.7
3,724,306	+		DZA65_RS17270	0.20	-1.1
3,724,306	+		DZA65_RS17270	0.20	-0.7
3,724,306	+		DZA65_RS17270	0.20	-0.9
3,724,306	+		DZA65_RS17270	0.20	-0.1
3,724,307	-		DZA65_RS17270	0.20	-3.1
3,724,307	-		DZA65_RS17270	0.20	-1.7
3,724,319	+		DZA65_RS17270	0.21	-1.7
3,724,319	+		DZA65_RS17270	0.21	-2.6
3,724,319	+		DZA65_RS17270	0.21	-2.4
3,724,319	+		DZA65_RS17270	0.21	-0.1
3,724,319	+		DZA65_RS17270	0.21	+0.2
3,724,319	+		DZA65_RS17270	0.21	-2.4
3,724,320	-		DZA65_RS17270	0.21	-2.4
3,724,320	-		DZA65_RS17270	0.21	-0.3
3,724,320	-		DZA65_RS17270	0.21	-2.3
3,724,320	-		DZA65_RS17270	0.21	-2.1
3,724,320	-		DZA65_RS17270	0.21	-1.4
3,724,320	-		DZA65_RS17270	0.21	-0.4
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3,724,339	+		DZA65_RS17270	0.23	-1.1
3,724,339	+		DZA65_RS17270	0.23	-0.7
3,724,340	-		DZA65_RS17270	0.23	-1.2
3,724,340	-		DZA65_RS17270	0.23	+0.1
3,724,340	-				-1.4
3,724,340	-		DZA65_RS17270	0.23	-0.9
3,724,340	-		DZA65_RS17270	0.23	+0.4
3,724,340	-		DZA65_RS17270	0.23	-1.1
3,724,345	+		DZA65_RS17270	0.23	-0.3
3,724,345	+		DZA65_RS17270	0.23	-0.1
3,724,345	+		DZA65_RS17270	0.23	-0.7
3,724,345	+		DZA65_RS17270	0.23	-1.0
3,724,345	+		DZA65_RS17270	0.23	+0.7
3,724,345	+		DZA65_RS17270	0.23	-0.6
3,724,345	+		DZA65_RS17270	0.23	-0.7
3,724,346	-		DZA65_RS17270	0.23	-1.1
3,724,346	-				+0.3
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3,724,374	+		DZA65_RS17270	0.25	-0.5
3,724,374	+		DZA65_RS17270	0.25	-1.1
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3,724,375	-		DZA65_RS17270	0.25	+0.9
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3,724,726	+		DZA65_RS17270	0.50	+0.1
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3,724,915	-				-1.8
3,724,915	-		DZA65_RS17270	0.64	-0.1
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3,724,915	-		DZA65_RS17270	0.64	-0.9
3,724,915	-		DZA65_RS17270	0.64	-1.9
3,724,915	-		DZA65_RS17270	0.64	-1.4
3,724,915	-				-0.7
3,724,915	-		DZA65_RS17270	0.64	-1.5
3,724,948	+		DZA65_RS17270	0.66	-0.3
3,724,949	-		DZA65_RS17270	0.66	+0.2
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3,724,949	-		DZA65_RS17270	0.66	+0.5
3,724,949	-		DZA65_RS17270	0.66	-0.8