Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17080

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,685,784	+		DZA65_RS17075	0.35	-0.7
3,685,784	+		DZA65_RS17075	0.35	-0.1
3,685,784	+		DZA65_RS17075	0.35	+0.9
3,685,785	-		DZA65_RS17075	0.35	+1.3
3,685,785	-		DZA65_RS17075	0.35	-0.1
3,685,785	-		DZA65_RS17075	0.35	+0.4
3,685,864	-		DZA65_RS17075	0.43	+2.2
3,685,886	+		DZA65_RS17075	0.45	+0.5
3,685,887	-		DZA65_RS17075	0.45	-0.1
3,685,946	+		DZA65_RS17075	0.51	-1.9
3,685,947	-		DZA65_RS17075	0.51	-0.1
3,685,947	-		DZA65_RS17075	0.51	-1.0
3,685,947	-		DZA65_RS17075	0.51	+0.9
3,685,947	-		DZA65_RS17075	0.51	-0.1
3,685,947	-		DZA65_RS17075	0.51	+0.2
3,685,947	-		DZA65_RS17075	0.51	+0.9
3,686,026	-		DZA65_RS17075	0.59	+1.9
3,686,049	+		DZA65_RS17075	0.61	-1.1
3,686,049	+		DZA65_RS17075	0.61	-0.2
3,686,049	+		DZA65_RS17075	0.61	+0.1
3,686,050	-		DZA65_RS17075	0.61	-0.1
3,686,050	-		DZA65_RS17075	0.61	-1.7
3,686,050	-		DZA65_RS17075	0.61	+0.5
3,686,050	-		DZA65_RS17075	0.61	+1.2
3,686,050	-		DZA65_RS17075	0.61	-0.2
3,686,097	-		DZA65_RS17075	0.66	+1.3
3,686,097	-		DZA65_RS17075	0.66	+0.6
3,686,097	-		DZA65_RS17075	0.66	-1.4
3,686,097	-		DZA65_RS17075	0.66	-0.1
3,686,097	-		DZA65_RS17075	0.66	+1.0
3,686,133	+		DZA65_RS17075	0.69	+0.8
3,686,134	-		DZA65_RS17075	0.69	+0.4
3,686,134	-		DZA65_RS17075	0.69	+0.5
3,686,134	-		DZA65_RS17075	0.69	+0.9
3,686,134	-		DZA65_RS17075	0.69	+0.9
3,686,172	+		DZA65_RS17075	0.73	-0.1
3,686,209	+				+0.6
3,686,305	-		DZA65_RS17075	0.86	+0.6
3,686,316	+		DZA65_RS17075	0.87	+0.5
3,686,316	+		DZA65_RS17075	0.87	+0.6
3,686,318	+		DZA65_RS17075	0.88	-1.2
3,686,318	+		DZA65_RS17075	0.88	-0.7
3,686,318	+		DZA65_RS17075	0.88	+0.1
3,686,318	+		DZA65_RS17075	0.88	+0.9
3,686,318	+		DZA65_RS17075	0.88	+0.9
3,686,318	+		DZA65_RS17075	0.88	+0.5
3,686,318	+		DZA65_RS17075	0.88	-2.8
3,686,319	-		DZA65_RS17075	0.88	+0.9
3,686,319	-		DZA65_RS17075	0.88	-0.3
3,686,319	-		DZA65_RS17075	0.88	+0.3
3,686,319	-		DZA65_RS17075	0.88	-1.1
3,686,319	-		DZA65_RS17075	0.88	+1.3
3,686,319	-		DZA65_RS17075	0.88	+0.5
3,686,319	-		DZA65_RS17075	0.88	+0.5
3,686,319	-		DZA65_RS17075	0.88	-0.4
3,686,319	-		DZA65_RS17075	0.88	-0.4
3,686,319	-		DZA65_RS17075	0.88	-0.7
3,686,348	+				+0.1
3,686,348	+				+0.9
3,686,349	-				-0.9
3,686,349	-				-0.4
3,686,349	-				+1.4
3,686,349	-				+0.9
3,686,349	-				-1.6
3,686,363	-				-0.7
3,686,396	-				+0.9
3,686,409	+				-3.3
3,686,443	+				+1.9
3,686,443	+				+0.6
3,686,444	-				-0.3
3,686,446	+				+0.3
3,686,447	-				+1.5
3,686,447	-				-1.1
3,686,447	-				-1.5
3,686,447	-				-1.1
3,686,447	-				-0.4
3,686,447	-				+0.1
3,686,449	+				-0.4
3,686,449	+				-0.1
3,686,450	-				+0.6
3,686,450	-				-0.7
3,686,544	+				-0.1
3,686,545	-				-1.9
3,686,545	-				-1.9
3,686,586	+				+0.3
3,686,586	+				+2.2
3,686,587	-				-1.8
3,686,587	-				-1.1
3,686,587	-				-1.4
3,686,590	+				+0.6
3,686,590	+				-0.7
3,686,590	+				-0.7
3,686,590	+				-0.1
3,686,591	-				+3.9
3,686,591	-				-0.9
3,686,604	+				+0.5
3,686,604	+				+0.9
3,686,604	+				-1.8
3,686,605	-				-0.7
3,686,648	+				-1.2
3,686,648	+				-0.1
3,686,648	+				-1.7
3,686,649	-				+1.8
3,686,651	-				+2.0
3,686,661	+				+1.3
3,686,662	-				-0.7
3,686,662	-				+0.6
3,686,664	-				-0.4
3,686,664	-				+0.4
3,686,664	-				-2.1
3,686,664	-				-0.8
3,686,664	-				-0.8
3,686,664	-				-1.4
3,686,666	+				-0.5
3,686,667	-				-1.7
3,686,696	-				+1.5
3,686,696	-				-0.1
3,686,727	+				-1.8
3,686,728	-				+0.7
3,686,745	-				-1.6
3,686,751	+				+0.6
3,686,751	+				+0.1
3,686,751	+				+0.2
3,686,752	-				+1.5
3,686,752	-				+0.6
3,686,752	-				+2.3
3,686,781	+				+1.9
3,686,781	+				-0.5
3,686,781	+				+0.1
3,686,781	+				+0.4
3,686,781	+				+0.1
3,686,782	-				-0.0
3,686,782	-				+1.5
3,686,782	-				-1.1
3,686,782	-				+0.6
3,686,782	-				-0.7
3,686,782	-				-0.1
3,686,860	+				-2.0
3,686,861	-				+0.1
3,686,861	-				-0.1
3,686,877	-		DZA65_RS17080	0.11	+0.2
3,687,019	+		DZA65_RS17080	0.23	+0.9
3,687,019	+		DZA65_RS17080	0.23	+0.9
3,687,020	-		DZA65_RS17080	0.23	-0.0
3,687,020	-		DZA65_RS17080	0.23	+0.7
3,687,020	-		DZA65_RS17080	0.23	+1.5
3,687,020	-				-0.4
3,687,052	-		DZA65_RS17080	0.26	-1.9
3,687,052	-		DZA65_RS17080	0.26	+1.3
3,687,057	+		DZA65_RS17080	0.27	-0.1
3,687,057	+		DZA65_RS17080	0.27	-1.4
3,687,057	+		DZA65_RS17080	0.27	-0.9
3,687,057	+		DZA65_RS17080	0.27	+0.3
3,687,058	-		DZA65_RS17080	0.27	-1.1
3,687,058	-		DZA65_RS17080	0.27	-0.1
3,687,058	-		DZA65_RS17080	0.27	-0.3
3,687,058	-		DZA65_RS17080	0.27	-1.6
3,687,117	+		DZA65_RS17080	0.32	-1.1
3,687,118	-		DZA65_RS17080	0.32	-0.9
3,687,150	+		DZA65_RS17080	0.35	+1.9
3,687,150	+		DZA65_RS17080	0.35	-2.4
3,687,150	+		DZA65_RS17080	0.35	-1.7
3,687,150	+		DZA65_RS17080	0.35	-1.1
3,687,150	+		DZA65_RS17080	0.35	-2.8
3,687,150	+		DZA65_RS17080	0.35	-0.2
3,687,150	+		DZA65_RS17080	0.35	-1.4
3,687,151	-		DZA65_RS17080	0.35	+0.5
3,687,151	-		DZA65_RS17080	0.35	-0.1
3,687,151	-		DZA65_RS17080	0.35	+0.6
3,687,151	-		DZA65_RS17080	0.35	-0.3
3,687,151	-		DZA65_RS17080	0.35	+0.9
3,687,151	-		DZA65_RS17080	0.35	-0.4
3,687,353	+		DZA65_RS17080	0.52	-0.7
3,687,353	+		DZA65_RS17080	0.52	-0.4
3,687,353	+		DZA65_RS17080	0.52	-0.6
3,687,353	+		DZA65_RS17080	0.52	-1.7
3,687,354	-		DZA65_RS17080	0.52	-0.7
3,687,354	-		DZA65_RS17080	0.52	-0.9
3,687,354	-		DZA65_RS17080	0.52	+0.9
3,687,354	-		DZA65_RS17080	0.52	+0.3
3,687,374	+		DZA65_RS17080	0.54	-0.1
3,687,802	+				-1.4
3,687,803	-				+0.9
3,687,803	-				-2.7
3,687,897	+				-0.6
3,687,898	-				+0.3
3,687,923	+				+0.1
3,687,924	-				-0.2
3,687,924	-				-0.1
3,687,924	-				-0.7
3,687,964	-				+1.6
3,688,082	+				+1.9
3,688,113	-				-0.2
3,688,120	-				-0.3
3,688,120	-				+0.3
3,688,120	-				+0.9
3,688,168	+				+2.2
3,688,169	-				+2.2
3,688,286	-		DZA65_RS17085	0.13	+0.2
3,688,313	+		DZA65_RS17085	0.14	+1.5
3,688,313	+		DZA65_RS17085	0.14	+0.9
3,688,313	+		DZA65_RS17085	0.14	+0.2
3,688,313	+		DZA65_RS17085	0.14	-0.1
3,688,314	-		DZA65_RS17085	0.15	-0.1
3,688,321	+		DZA65_RS17085	0.15	-2.3
3,688,400	+		DZA65_RS17085	0.20	+0.0
3,688,400	+		DZA65_RS17085	0.20	-1.2
3,688,400	+		DZA65_RS17085	0.20	+1.9
3,688,401	-				-1.1
3,688,625	-		DZA65_RS17085	0.36	+1.0
3,688,625	-		DZA65_RS17085	0.36	-0.3
3,688,686	+		DZA65_RS17085	0.40	+0.3
3,688,687	-		DZA65_RS17085	0.40	-0.0
3,688,720	+		DZA65_RS17085	0.42	+0.7
3,688,721	-		DZA65_RS17085	0.43	+1.2
3,688,723	+		DZA65_RS17085	0.43	-0.2
3,688,805	-		DZA65_RS17085	0.48	-0.2
3,688,872	+		DZA65_RS17085	0.53	+0.9
3,688,872	+		DZA65_RS17085	0.53	-0.5
3,688,873	-		DZA65_RS17085	0.53	+0.9
3,688,873	-		DZA65_RS17085	0.53	-0.3
3,688,873	-		DZA65_RS17085	0.53	+1.0