Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16665

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,596,623	-				-2.2
3,596,623	-				-2.3
3,596,623	-				-1.5
3,596,623	-				-1.1
3,596,626	-				+0.1
3,596,626	-				+1.1
3,596,626	-				-2.3
3,596,644	-				-1.9
3,596,644	-				-0.7
3,596,644	-				+0.5
3,596,644	-				-2.7
3,596,651	-				-1.7
3,596,655	-				-1.5
3,596,655	-				-0.1
3,596,655	-				-2.5
3,596,710	-				-1.1
3,596,715	-				+0.1
3,596,715	-				-0.6
3,596,715	-				-0.3
3,596,715	-				+0.9
3,596,715	-				+0.3
3,596,715	-				-0.6
3,596,715	-				-0.8
3,596,715	-				-1.1
3,596,715	-				-0.1
3,596,715	-				+0.9
3,596,715	-				+0.0
3,596,715	-				+1.7
3,596,715	-				-0.5
3,596,715	-				-2.6
3,596,718	-		DZA65_RS16660	0.10	-0.4
3,596,718	-		DZA65_RS16660	0.10	-0.1
3,596,718	-		DZA65_RS16660	0.10	-0.7
3,596,760	-		DZA65_RS16660	0.16	+0.1
3,596,800	-		DZA65_RS16660	0.21	+0.9
3,596,800	-		DZA65_RS16660	0.21	-1.7
3,596,804	-		DZA65_RS16660	0.21	+0.3
3,596,804	-		DZA65_RS16660	0.21	-1.4
3,596,804	-		DZA65_RS16660	0.21	+3.2
3,596,804	-		DZA65_RS16660	0.21	-1.5
3,596,804	-		DZA65_RS16660	0.21	-1.1
3,596,804	-		DZA65_RS16660	0.21	+1.6
3,596,804	-		DZA65_RS16660	0.21	+2.6
3,596,830	-		DZA65_RS16660	0.25	-0.1
3,596,893	-		DZA65_RS16660	0.33	-0.6
3,596,893	-		DZA65_RS16660	0.33	-0.1
3,596,893	-		DZA65_RS16660	0.33	+1.3
3,597,036	-		DZA65_RS16660	0.52	+0.7
3,597,039	+		DZA65_RS16660	0.52	+0.9
3,597,040	-		DZA65_RS16660	0.52	-0.1
3,597,048	-		DZA65_RS16660	0.53	+1.2
3,597,073	+		DZA65_RS16660	0.57	-1.1
3,597,074	-		DZA65_RS16660	0.57	-0.1
3,597,074	-		DZA65_RS16660	0.57	+0.4
3,597,074	-		DZA65_RS16660	0.57	+0.3
3,597,080	+		DZA65_RS16660	0.57	-0.7
3,597,081	-		DZA65_RS16660	0.58	-1.3
3,597,162	+		DZA65_RS16660	0.68	+0.5
3,597,162	+		DZA65_RS16660	0.68	+0.9
3,597,162	+		DZA65_RS16660	0.68	+0.9
3,597,162	+		DZA65_RS16660	0.68	-0.8
3,597,162	+		DZA65_RS16660	0.68	-0.1
3,597,163	-		DZA65_RS16660	0.68	-0.1
3,597,247	+		DZA65_RS16660	0.79	-0.9
3,597,247	+		DZA65_RS16660	0.79	-3.1
3,597,248	-		DZA65_RS16660	0.79	+3.0
3,597,262	-		DZA65_RS16660	0.81	-1.1
3,597,262	-		DZA65_RS16660	0.81	+0.3
3,597,262	-		DZA65_RS16660	0.81	-0.3
3,597,262	-		DZA65_RS16660	0.81	+2.5
3,597,262	-		DZA65_RS16660	0.81	+1.0
3,597,359	+				-0.4
3,597,386	+				-1.9
3,597,387	-				-0.9
3,597,453	+				-0.7
3,597,453	+				+1.0
3,597,453	+				-0.8
3,597,453	+				+0.7
3,597,453	+				+1.1
3,597,453	+				-0.7
3,597,453	+				+0.5
3,597,454	-				-0.3
3,597,454	-				-0.7
3,597,454	-				+0.2
3,597,454	-				-2.2
3,597,454	-				+1.1
3,597,454	-				-1.7
3,597,454	-				-1.1
3,597,454	-				+0.1
3,597,539	+				+0.1
3,597,539	+				+0.3
3,597,539	+				-0.1
3,597,539	+				+1.9
3,597,539	+				-1.1
3,597,539	+				+0.5
3,597,545	-				+0.5
3,597,563	+				-0.1
3,597,563	+				-0.7
3,597,563	+				-0.9
3,597,564	-				-0.1
3,597,564	-				+0.2
3,597,564	-				-1.2
3,597,564	-				-1.7
3,597,564	-				+0.5
3,597,657	+				-0.4
3,597,657	+				-0.5
3,597,657	+				-3.5
3,597,657	+				+0.1
3,597,658	-				-0.7
3,597,658	-				-2.3
3,597,658	-				-2.0
3,597,730	-		DZA65_RS16665	0.11	+1.3
3,597,752	+		DZA65_RS16665	0.13	-1.1
3,597,752	+		DZA65_RS16665	0.13	-0.3
3,597,926	+		DZA65_RS16665	0.28	+0.4
3,597,926	+		DZA65_RS16665	0.28	-2.5
3,597,926	+		DZA65_RS16665	0.28	-1.0
3,597,926	+		DZA65_RS16665	0.28	+1.2
3,597,926	+		DZA65_RS16665	0.28	+0.3
3,597,927	-		DZA65_RS16665	0.28	+0.9
3,597,927	-		DZA65_RS16665	0.28	+0.7
3,597,927	-		DZA65_RS16665	0.28	-0.6
3,597,927	-				+0.7
3,597,964	-		DZA65_RS16665	0.31	+1.9
3,598,007	+		DZA65_RS16665	0.35	-0.6
3,598,007	+		DZA65_RS16665	0.35	+0.4
3,598,007	+		DZA65_RS16665	0.35	-0.7
3,598,008	-		DZA65_RS16665	0.35	-0.7
3,598,008	-		DZA65_RS16665	0.35	+1.2
3,598,020	+		DZA65_RS16665	0.36	+0.0
3,598,089	+		DZA65_RS16665	0.42	+0.5
3,598,090	-		DZA65_RS16665	0.42	-1.5
3,598,090	-		DZA65_RS16665	0.42	+0.3
3,598,137	+		DZA65_RS16665	0.46	-0.4
3,598,137	+		DZA65_RS16665	0.46	+0.1
3,598,137	+		DZA65_RS16665	0.46	+0.9
3,598,137	+		DZA65_RS16665	0.46	+0.5
3,598,137	+		DZA65_RS16665	0.46	-0.9
3,598,137	+		DZA65_RS16665	0.46	-0.1
3,598,306	+		DZA65_RS16665	0.61	-1.0
3,598,307	-		DZA65_RS16665	0.61	-1.9
3,598,318	-		DZA65_RS16665	0.62	-0.7
3,598,363	-		DZA65_RS16665	0.66	+0.2
3,598,439	+		DZA65_RS16665	0.73	+1.9
3,598,439	+		DZA65_RS16665	0.73	+0.3
3,598,439	+		DZA65_RS16665	0.73	-0.9
3,598,440	-		DZA65_RS16665	0.73	-0.7
3,598,440	-		DZA65_RS16665	0.73	-0.1
3,598,440	-		DZA65_RS16665	0.73	+1.9
3,598,440	-		DZA65_RS16665	0.73	-2.7
3,598,440	-		DZA65_RS16665	0.73	-0.4
3,598,440	-		DZA65_RS16665	0.73	-0.7
3,598,569	+		DZA65_RS16665	0.84	-0.1
3,598,569	+		DZA65_RS16665	0.84	-0.1
3,598,569	+		DZA65_RS16665	0.84	-1.1
3,598,569	+		DZA65_RS16665	0.84	-0.7
3,598,569	+		DZA65_RS16665	0.84	-0.2
3,598,569	+		DZA65_RS16665	0.84	+0.9
3,598,570	-		DZA65_RS16665	0.84	+0.0
3,598,570	-		DZA65_RS16665	0.84	-0.0
3,598,570	-		DZA65_RS16665	0.84	+0.4
3,598,570	-		DZA65_RS16665	0.84	-2.3
3,598,572	+		DZA65_RS16665	0.84	-0.5
3,598,572	+		DZA65_RS16665	0.84	-0.1
3,598,572	+		DZA65_RS16665	0.84	-0.8
3,598,572	+		DZA65_RS16665	0.84	+0.7
3,598,573	-		DZA65_RS16665	0.84	-0.7
3,598,573	-		DZA65_RS16665	0.84	+0.3
3,598,607	+		DZA65_RS16665	0.87	-2.3
3,598,607	+		DZA65_RS16665	0.87	-0.3
3,598,607	+		DZA65_RS16665	0.87	-0.1
3,598,608	-		DZA65_RS16665	0.87	-1.7
3,598,613	+		DZA65_RS16665	0.88	-0.6
3,598,613	+		DZA65_RS16665	0.88	+0.9
3,598,613	+		DZA65_RS16665	0.88	-0.0
3,598,613	+		DZA65_RS16665	0.88	-1.7
3,598,613	+		DZA65_RS16665	0.88	-0.7
3,598,613	+		DZA65_RS16665	0.88	+0.2
3,598,613	+		DZA65_RS16665	0.88	+3.2
3,598,613	+		DZA65_RS16665	0.88	-0.1
3,598,613	+		DZA65_RS16665	0.88	-1.6
3,598,613	+		DZA65_RS16665	0.88	-1.6
3,598,613	+		DZA65_RS16665	0.88	+0.9
3,598,614	-		DZA65_RS16665	0.88	+2.9
3,598,614	-		DZA65_RS16665	0.88	-1.9
3,598,614	-		DZA65_RS16665	0.88	-0.8
3,598,614	-		DZA65_RS16665	0.88	+1.2
3,598,614	-		DZA65_RS16665	0.88	-0.1
3,598,614	-				+0.9
3,598,614	-		DZA65_RS16665	0.88	-1.3
3,598,614	-		DZA65_RS16665	0.88	-0.5
3,598,614	-		DZA65_RS16665	0.88	+0.9
3,598,752	+				+0.4
3,598,752	+				+0.7
3,598,752	+				+0.0
3,598,753	-				-0.3
3,598,753	-				+0.9
3,598,753	-				+0.4
3,598,768	+				-1.1
3,598,768	+				+0.1
3,598,769	-				-1.7
3,598,769	-				-0.1
3,598,785	+				+0.3
3,598,785	+				-0.7
3,598,785	+				-2.3
3,598,785	+				-0.1
3,598,785	+				+0.1
3,598,786	-				-0.7
3,598,786	-				-0.7
3,598,809	+				+1.7
3,598,810	-				-2.3
3,598,886	+				-1.5
3,598,897	+				-0.1
3,598,897	+				-0.1
3,598,958	-				-0.4
3,599,160	+		DZA65_RS16670	0.47	-0.7
3,599,160	+		DZA65_RS16670	0.47	-1.5
3,599,161	-		DZA65_RS16670	0.47	-1.5
3,599,237	-		DZA65_RS16670	0.65	-1.5
3,599,286	-		DZA65_RS16670	0.76	-1.9
3,599,317	+		DZA65_RS16670	0.84	-1.9
3,599,318	-		DZA65_RS16670	0.84	-1.4
3,599,372	+				+0.9
3,599,372	+				-1.1
3,599,372	+				-1.5
3,599,372	+				-1.1
3,599,373	-				-1.8
3,599,373	-				-0.1
3,599,379	+				-0.1
3,599,379	+				-1.7
3,599,380	-				-0.1
3,599,387	+				-0.3
3,599,413	+				-1.0
3,599,414	-				-0.1
3,599,424	+				-1.5
3,599,425	-				-0.1
3,599,434	+				-1.5
3,599,434	+				-1.1
3,599,434	+				-0.7
3,599,434	+				-0.1
3,599,435	-				-0.5
3,599,435	-				-0.1
3,599,436	+				+1.3
3,599,437	-				+0.4
3,599,437	-				-0.2
3,599,437	-				+0.1
3,599,439	+				-0.5
3,599,451	+				-1.7
3,599,451	+				-1.6
3,599,468	+				+0.9
3,599,468	+				+1.4
3,599,468	+				-1.9
3,599,468	+				-1.1
3,599,468	+				-0.5
3,599,469	-				-0.5
3,599,469	-				+2.2
3,599,469	-				-0.9
3,599,502	+				-0.4
3,599,502	+				+1.4
3,599,540	-				+0.2
3,599,540	-				-0.4
3,599,540	-				+2.3
3,599,543	+				+0.3
3,599,543	+				+0.9
3,599,543	+				-0.9
3,599,543	+				-0.7
3,599,543	+				-0.5
3,599,543	+				+0.9
3,599,543	+				+1.6
3,599,543	+				+2.7
3,599,543	+				+1.2
3,599,543	+				+0.9
3,599,543	+				-0.9
3,599,543	+				-0.6
3,599,543	+				-0.7
3,599,543	+				-3.1
3,599,543	+				+1.9
3,599,544	-				+1.7
3,599,544	-				-0.1
3,599,544	-				-0.7
3,599,544	-				+0.4
3,599,544	-				-0.5
3,599,544	-				-1.5
3,599,544	-				+1.1
3,599,544	-				-0.3
3,599,544	-				-0.7
3,599,545	+				+0.1
3,599,545	+				+0.5
3,599,545	+				+0.1
3,599,545	+				+1.3
3,599,545	+				+0.9
3,599,545	+				+0.4
3,599,545	+				-0.7
3,599,545	+				-0.1
3,599,546	-				-0.3
3,599,546	-				+0.6
3,599,546	-				-0.6
3,599,546	-				+1.4
3,599,546	-				-1.6
3,599,546	-				+0.8
3,599,546	-				-0.5
3,599,546	-				+1.3
3,599,546	-				+0.0
3,599,547	+				-0.7
3,599,547	+				-0.1
3,599,547	+				-1.0
3,599,547	+				-3.0
3,599,547	+				+1.2
3,599,547	+				+1.8
3,599,547	+				-1.5
3,599,548	-				+2.4
3,599,548	-				-1.1
3,599,548	-				+0.4
3,599,548	-				-0.9
3,599,548	-				+1.7
3,599,548	-				-0.7
3,599,548	-				-1.1
3,599,668	+				+1.3
3,599,668	+				+0.4
3,599,668	+				+0.2
3,599,668	+				+0.4
3,599,668	+				+0.6
3,599,668	+				-0.7
3,599,668	+				+0.7
3,599,668	+				-0.5
3,599,668	+				+1.9
3,599,668	+				+0.1
3,599,668	+				-0.3
3,599,668	+				-0.7
3,599,668	+				+0.1
3,599,668	+				-0.5
3,599,668	+				-0.7
3,599,669	-				+1.2
3,599,669	-				+0.9
3,599,669	-				+0.9
3,599,669	-				+0.5
3,599,669	-				-0.3
3,599,669	-				+0.9
3,599,669	-				-0.4
3,599,669	-				-0.1
3,599,669	-				+1.4
3,599,669	-				-0.1
3,599,674	+				-1.5
3,599,674	+				+1.4
3,599,674	+				-0.5
3,599,675	-				+0.0
3,599,675	-				-1.6
3,599,737	+				+0.7