Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16035

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,474,196	+				-0.8
3,474,196	+				-1.5
3,474,235	+				-0.7
3,474,235	+				+1.2
3,474,236	-				-0.4
3,474,271	-				+0.1
3,474,360	+				-2.0
3,474,360	+				-0.2
3,474,360	+				-1.5
3,474,360	+				+0.6
3,474,360	+				+0.8
3,474,361	-				-0.6
3,474,361	-				+0.6
3,474,361	-				+0.8
3,474,362	+				-2.0
3,474,362	+				-0.1
3,474,362	+				+0.8
3,474,362	+				-0.1
3,474,362	+				-0.2
3,474,362	+				-0.2
3,474,362	+				+0.8
3,474,363	-				+0.3
3,474,363	-				-0.7
3,474,363	-				+1.4
3,474,363	-				-1.0
3,474,363	-				+0.8
3,474,363	-				-1.2
3,474,363	-				+1.6
3,474,363	-				-1.0
3,474,363	-				+0.5
3,474,363	-				-1.2
3,474,372	+				-0.0
3,474,414	+				-1.1
3,474,416	+				+0.5
3,474,416	+				+1.4
3,474,417	-				+1.7
3,474,417	-				-0.2
3,474,417	-				+0.4
3,474,417	-				-0.4
3,474,417	-				-2.4
3,474,417	-				+0.1
3,474,452	+		DZA65_RS16030	0.14	-1.6
3,474,480	+		DZA65_RS16030	0.17	+0.8
3,474,480	+		DZA65_RS16030	0.17	+0.0
3,474,480	+		DZA65_RS16030	0.17	-1.5
3,474,480	+		DZA65_RS16030	0.17	-0.7
3,474,481	-		DZA65_RS16030	0.17	+0.2
3,474,481	-		DZA65_RS16030	0.17	+2.4
3,474,481	-		DZA65_RS16030	0.17	+1.2
3,474,483	+		DZA65_RS16030	0.18	-0.5
3,474,483	+		DZA65_RS16030	0.18	+0.8
3,474,484	-		DZA65_RS16030	0.18	-0.7
3,474,555	+		DZA65_RS16030	0.26	-1.4
3,474,556	-		DZA65_RS16030	0.26	-1.2
3,474,776	+		DZA65_RS16030	0.53	+0.8
3,474,776	+		DZA65_RS16030	0.53	+1.1
3,474,776	+		DZA65_RS16030	0.53	+0.4
3,474,792	-		DZA65_RS16030	0.55	-0.2
3,474,885	+		DZA65_RS16030	0.67	-0.5
3,474,885	+		DZA65_RS16030	0.67	-0.2
3,474,885	+		DZA65_RS16030	0.67	+1.8
3,474,886	-		DZA65_RS16030	0.67	-1.6
3,474,886	-		DZA65_RS16030	0.67	-0.2
3,475,027	+		DZA65_RS16030	0.84	-0.2
3,475,028	-		DZA65_RS16030	0.84	+0.2
3,475,028	-				+1.4
3,475,028	-		DZA65_RS16030	0.84	+0.3
3,475,056	-		DZA65_RS16030	0.88	-2.0
3,475,058	+		DZA65_RS16030	0.88	-2.3
3,475,059	-		DZA65_RS16030	0.88	+0.3
3,475,059	-		DZA65_RS16030	0.88	-1.2
3,475,075	+				-1.2
3,475,143	+				-1.5
3,475,159	+				+0.8
3,475,159	+				+1.2
3,475,159	+				+1.0
3,475,159	+				+0.5
3,475,160	-				-0.5
3,475,160	-				-0.5
3,475,276	+				-2.5
3,475,276	+				+0.7
3,475,276	+				-1.7
3,475,277	-				+1.6
3,475,277	-				-0.3
3,475,277	-				+0.8
3,475,277	-				-0.6
3,475,328	-				+1.3
3,475,372	+		DZA65_RS16035	0.12	+0.1
3,475,373	-		DZA65_RS16035	0.12	+0.3
3,475,382	+		DZA65_RS16035	0.13	-0.0
3,475,382	+		DZA65_RS16035	0.13	-0.2
3,475,382	+		DZA65_RS16035	0.13	-1.9
3,475,382	+		DZA65_RS16035	0.13	+0.4
3,475,382	+		DZA65_RS16035	0.13	-1.4
3,475,382	+		DZA65_RS16035	0.13	-0.7
3,475,383	-		DZA65_RS16035	0.13	-0.4
3,475,383	-		DZA65_RS16035	0.13	-0.2
3,475,608	+		DZA65_RS16035	0.26	-1.2
3,475,608	+		DZA65_RS16035	0.26	+0.4
3,475,608	+		DZA65_RS16035	0.26	+0.1
3,475,608	+		DZA65_RS16035	0.26	-0.4
3,475,608	+		DZA65_RS16035	0.26	+0.1
3,475,608	+		DZA65_RS16035	0.26	-0.2
3,475,608	+		DZA65_RS16035	0.26	+0.1
3,475,609	-		DZA65_RS16035	0.26	+0.7
3,475,609	-		DZA65_RS16035	0.26	-1.2
3,475,609	-		DZA65_RS16035	0.26	+0.3
3,475,609	-		DZA65_RS16035	0.26	-0.5
3,475,732	+		DZA65_RS16035	0.34	+1.7
3,475,732	+		DZA65_RS16035	0.34	-1.0
3,475,732	+		DZA65_RS16035	0.34	-0.7
3,475,732	+		DZA65_RS16035	0.34	-2.2
3,475,733	-		DZA65_RS16035	0.34	+0.5
3,475,733	-		DZA65_RS16035	0.34	-0.7
3,475,756	-		DZA65_RS16035	0.35	-0.2
3,475,837	+		DZA65_RS16035	0.40	-3.0
3,475,850	-		DZA65_RS16035	0.41	-1.2
3,476,118	-				-1.2
3,476,147	+		DZA65_RS16035	0.59	-0.5
3,476,147	+		DZA65_RS16035	0.59	+1.6
3,476,339	+		DZA65_RS16035	0.71	+0.4
3,476,339	+		DZA65_RS16035	0.71	-2.0
3,476,339	+		DZA65_RS16035	0.71	-1.2
3,476,339	+		DZA65_RS16035	0.71	-1.7
3,476,340	-		DZA65_RS16035	0.71	+1.2
3,476,340	-				-2.3
3,476,340	-		DZA65_RS16035	0.71	+0.8
3,476,340	-		DZA65_RS16035	0.71	-0.4
3,476,340	-		DZA65_RS16035	0.71	-0.7
3,476,340	-		DZA65_RS16035	0.71	+1.0
3,476,416	+		DZA65_RS16035	0.75	+0.8
3,476,417	-		DZA65_RS16035	0.76	-1.0
3,476,515	+				+1.2
3,476,537	+		DZA65_RS16035	0.83	-0.4
3,476,538	-		DZA65_RS16035	0.83	-1.3
3,476,538	-		DZA65_RS16035	0.83	-1.2
3,476,545	+		DZA65_RS16035	0.83	-0.5
3,476,546	-		DZA65_RS16035	0.83	+1.1
3,476,733	+				-3.0
3,476,734	-				+0.3
3,476,762	+				-1.5
3,476,852	+				-2.6
3,476,852	+				-1.2
3,476,853	-				+0.3
3,476,853	-				+1.4
3,476,897	-				+0.5
3,476,897	-				+1.2
3,476,999	+				+0.3
3,477,000	-				+1.1
3,477,128	+		DZA65_RS16040	0.14	-0.5
3,477,205	+		DZA65_RS16040	0.18	+0.0
3,477,206	-		DZA65_RS16040	0.18	+0.4
3,477,280	+		DZA65_RS16040	0.22	-2.3
3,477,281	-		DZA65_RS16040	0.22	+1.3
3,477,281	-		DZA65_RS16040	0.22	-1.0
3,477,283	+		DZA65_RS16040	0.22	+2.8
3,477,283	+		DZA65_RS16040	0.22	+0.6
3,477,283	+		DZA65_RS16040	0.22	-0.9
3,477,283	+		DZA65_RS16040	0.22	-0.6
3,477,284	-		DZA65_RS16040	0.22	-1.3
3,477,284	-		DZA65_RS16040	0.22	-0.2
3,477,284	-		DZA65_RS16040	0.22	-0.6
3,477,377	+		DZA65_RS16040	0.26	+0.4
3,477,378	-		DZA65_RS16040	0.26	-0.2
3,477,378	-		DZA65_RS16040	0.26	-0.4
3,477,404	+		DZA65_RS16040	0.27	+0.8
3,477,404	+		DZA65_RS16040	0.27	-1.7
3,477,405	-		DZA65_RS16040	0.27	-0.2
3,477,405	-		DZA65_RS16040	0.27	+1.1
3,477,405	-		DZA65_RS16040	0.27	-0.2
3,477,525	+		DZA65_RS16040	0.33	-0.6
3,477,640	+		DZA65_RS16040	0.38	-0.7
3,477,654	+		DZA65_RS16040	0.39	+0.8
3,477,655	-		DZA65_RS16040	0.39	-0.2
3,477,689	+		DZA65_RS16040	0.40	-1.5
3,477,689	+		DZA65_RS16040	0.40	+0.4
3,477,689	+		DZA65_RS16040	0.40	+1.0
3,477,689	+		DZA65_RS16040	0.40	-0.4
3,477,689	+		DZA65_RS16040	0.40	+0.7
3,477,690	-		DZA65_RS16040	0.41	-0.4
3,477,690	-		DZA65_RS16040	0.41	-0.6
3,477,699	+		DZA65_RS16040	0.41	-1.7
3,477,699	+		DZA65_RS16040	0.41	+0.8
3,477,699	+		DZA65_RS16040	0.41	-1.5
3,477,700	-		DZA65_RS16040	0.41	+0.8
3,477,700	-		DZA65_RS16040	0.41	-1.2
3,477,700	-		DZA65_RS16040	0.41	-1.4
3,477,756	+		DZA65_RS16040	0.44	+0.1
3,477,756	+		DZA65_RS16040	0.44	+0.4
3,477,757	-		DZA65_RS16040	0.44	-0.2
3,477,757	-		DZA65_RS16040	0.44	-0.2
3,477,757	-		DZA65_RS16040	0.44	+0.1
3,477,789	+		DZA65_RS16040	0.45	-0.5
3,477,789	+		DZA65_RS16040	0.45	-1.6
3,477,789	+		DZA65_RS16040	0.45	+0.2
3,477,789	+		DZA65_RS16040	0.45	+1.2
3,477,789	+		DZA65_RS16040	0.45	+1.1
3,477,789	+		DZA65_RS16040	0.45	+0.8
3,477,789	+		DZA65_RS16040	0.45	-0.7
3,477,790	-		DZA65_RS16040	0.45	+0.3
3,477,790	-		DZA65_RS16040	0.45	+0.8
3,477,790	-		DZA65_RS16040	0.45	+1.2
3,477,790	-		DZA65_RS16040	0.45	-0.2
3,477,790	-		DZA65_RS16040	0.45	-0.5
3,477,790	-		DZA65_RS16040	0.45	+0.4