Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15845

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,440,990	+		DZA65_RS15835	0.79	+0.1
3,441,149	-		DZA65_RS15835	0.89	+0.8
3,441,250	+				-0.4
3,441,298	+				-0.8
3,441,299	-				+2.8
3,441,317	+				-0.8
3,441,317	+				+1.2
3,441,317	+				+0.6
3,441,318	-				+0.2
3,441,319	+				+0.8
3,441,319	+				+0.4
3,441,319	+				+1.3
3,441,319	+				+0.1
3,441,319	+				-0.5
3,441,320	-				-2.4
3,441,323	+				+0.0
3,441,334	-				-2.8
3,441,341	+				-0.4
3,441,407	+				+1.2
3,441,511	+		DZA65_RS15840	0.63	-0.8
3,441,517	+		DZA65_RS15840	0.67	-3.1
3,441,517	+		DZA65_RS15840	0.67	-2.2
3,441,517	+		DZA65_RS15840	0.67	-1.2
3,441,517	+		DZA65_RS15840	0.67	-0.8
3,441,518	-		DZA65_RS15840	0.68	+0.0
3,441,518	-		DZA65_RS15840	0.68	-0.2
3,441,519	+		DZA65_RS15840	0.69	-0.9
3,441,519	+		DZA65_RS15840	0.69	+0.5
3,441,519	+				-1.5
3,441,519	+		DZA65_RS15840	0.69	+3.6
3,441,519	+		DZA65_RS15840	0.69	+0.2
3,441,519	+		DZA65_RS15840	0.69	+1.3
3,441,519	+		DZA65_RS15840	0.69	+1.4
3,441,519	+		DZA65_RS15840	0.69	-2.8
3,441,519	+		DZA65_RS15840	0.69	-0.6
3,441,519	+		DZA65_RS15840	0.69	+1.0
3,441,519	+		DZA65_RS15840	0.69	-0.8
3,441,519	+		DZA65_RS15840	0.69	-0.0
3,441,519	+		DZA65_RS15840	0.69	+2.5
3,441,519	+		DZA65_RS15840	0.69	-2.2
3,441,519	+		DZA65_RS15840	0.69	-1.2
3,441,519	+		DZA65_RS15840	0.69	-0.4
3,441,520	-		DZA65_RS15840	0.70	-1.2
3,441,520	-		DZA65_RS15840	0.70	+0.4
3,441,520	-		DZA65_RS15840	0.70	+0.8
3,441,520	-		DZA65_RS15840	0.70	+0.3
3,441,520	-		DZA65_RS15840	0.70	+1.4
3,441,520	-		DZA65_RS15840	0.70	-2.6
3,441,520	-		DZA65_RS15840	0.70	+1.1
3,441,520	-		DZA65_RS15840	0.70	-0.8
3,441,520	-		DZA65_RS15840	0.70	-0.1
3,441,559	+				-1.5
3,441,567	+				+2.0
3,441,567	+				+0.4
3,441,568	-				+1.2
3,441,568	-				-1.2
3,441,568	-				-1.2
3,441,569	+				+0.2
3,441,581	+				+1.6
3,441,581	+				+0.0
3,441,582	-				+1.2
3,441,611	+				-0.9
3,441,612	-				-0.8
3,441,612	-				+0.2
3,441,801	+				+0.7
3,441,802	-				-0.2
3,441,802	-				+0.8
3,441,804	+				+1.1
3,441,804	+				+1.4
3,441,804	+				-1.8
3,441,804	+				+0.1
3,441,804	+				-0.8
3,441,804	+				-1.3
3,441,805	-				-1.5
3,441,805	-				+0.1
3,441,805	-				-0.3
3,441,805	-				-1.0
3,441,857	+		DZA65_RS15845	0.11	+0.0
3,441,857	+		DZA65_RS15845	0.11	-0.8
3,441,857	+		DZA65_RS15845	0.11	-2.6
3,441,857	+		DZA65_RS15845	0.11	-1.2
3,441,857	+		DZA65_RS15845	0.11	-1.2
3,441,858	-		DZA65_RS15845	0.11	+0.6
3,441,858	-		DZA65_RS15845	0.11	-1.8
3,441,858	-		DZA65_RS15845	0.11	-1.0
3,441,858	-		DZA65_RS15845	0.11	-0.2
3,441,858	-		DZA65_RS15845	0.11	-0.1
3,441,955	+		DZA65_RS15845	0.24	-0.8
3,441,955	+		DZA65_RS15845	0.24	-1.8
3,441,956	-		DZA65_RS15845	0.24	-0.8
3,441,978	+		DZA65_RS15845	0.27	-0.9
3,441,978	+		DZA65_RS15845	0.27	-2.0
3,441,978	+		DZA65_RS15845	0.27	+0.3
3,442,045	+		DZA65_RS15845	0.36	-0.5
3,442,045	+		DZA65_RS15845	0.36	+2.0
3,442,045	+		DZA65_RS15845	0.36	+0.8
3,442,045	+		DZA65_RS15845	0.36	-1.2
3,442,045	+		DZA65_RS15845	0.36	-0.9
3,442,046	-		DZA65_RS15845	0.36	+1.1
3,442,046	-		DZA65_RS15845	0.36	+1.3
3,442,046	-		DZA65_RS15845	0.36	-0.2
3,442,046	-		DZA65_RS15845	0.36	-0.0
3,442,048	+		DZA65_RS15845	0.36	+1.8
3,442,048	+		DZA65_RS15845	0.36	-0.2
3,442,049	-		DZA65_RS15845	0.36	-1.1
3,442,049	-		DZA65_RS15845	0.36	-0.5
3,442,049	-		DZA65_RS15845	0.36	+0.0
3,442,049	-		DZA65_RS15845	0.36	+1.8
3,442,049	-		DZA65_RS15845	0.36	+0.7
3,442,192	+		DZA65_RS15845	0.55	+1.1
3,442,193	-		DZA65_RS15845	0.55	-1.8
3,442,215	+		DZA65_RS15845	0.58	+0.8
3,442,219	+		DZA65_RS15845	0.58	-2.2
3,442,219	+		DZA65_RS15845	0.58	+0.7
3,442,219	+		DZA65_RS15845	0.58	+0.6
3,442,220	-		DZA65_RS15845	0.58	+0.6
3,442,245	+		DZA65_RS15845	0.62	-1.5
3,442,245	+		DZA65_RS15845	0.62	+0.8
3,442,245	+		DZA65_RS15845	0.62	+0.4
3,442,245	+		DZA65_RS15845	0.62	+1.0
3,442,246	-		DZA65_RS15845	0.62	+0.5
3,442,246	-		DZA65_RS15845	0.62	-0.8
3,442,246	-		DZA65_RS15845	0.62	-0.6
3,442,297	-		DZA65_RS15845	0.68	-0.8
3,442,297	-		DZA65_RS15845	0.68	-0.6
3,442,388	+		DZA65_RS15845	0.80	+1.3
3,442,388	+		DZA65_RS15845	0.80	-0.2
3,442,388	+		DZA65_RS15845	0.80	-1.8
3,442,388	+		DZA65_RS15845	0.80	+0.6
3,442,389	-		DZA65_RS15845	0.81	-1.5
3,442,389	-		DZA65_RS15845	0.81	+0.8
3,442,531	+				+0.8
3,442,532	-				-0.2
3,442,532	-				-0.4
3,442,552	+				+0.4
3,442,552	+				-1.8
3,442,553	-				+1.1
3,442,553	-				+0.3
3,442,553	-				-0.6
3,442,556	+				+0.3
3,442,557	-				+0.8
3,442,580	+				+2.1
3,442,580	+				-0.2
3,442,580	+				+0.9
3,442,580	+				-0.2
3,442,580	+				-0.9
3,442,581	-				-0.4
3,442,603	+				+1.7
3,442,603	+				-0.2
3,442,603	+				-0.8
3,442,604	-				-0.4
3,442,604	-				+1.6
3,442,604	-				+2.4
3,442,622	+				-0.5
3,442,623	-				+0.7
3,442,623	-				-0.8
3,442,631	+				+0.8
3,442,631	+				-2.8
3,442,632	-				+2.3
3,442,632	-				-0.5
3,442,633	+				-1.5
3,442,633	+				+0.4
3,442,634	-				+0.5
3,442,634	-				-0.4
3,442,634	-				+0.9
3,442,634	-				+0.2
3,442,658	-				-0.5
3,442,664	-				-0.2
3,442,670	+				-1.0
3,442,670	+				-0.2
3,442,726	+				+0.9
3,442,772	+				-0.2
3,442,772	+				+0.2
3,442,796	+				+0.4
3,442,797	-				-0.9
3,442,807	+				-0.5
3,442,807	+				+0.2
3,442,807	+				-0.2
3,442,808	-				-0.2
3,442,808	-				+0.8
3,442,896	+				-0.9
3,442,896	+				+0.7
3,442,896	+				+1.2
3,442,896	+				-0.8
3,442,896	+				-3.0
3,442,896	+				-0.2
3,442,896	+				+0.6
3,442,896	+				+0.4
3,442,896	+				-0.3
3,442,897	-				+1.0
3,442,897	-				+0.4
3,442,897	-				+0.5
3,442,919	+		DZA65_RS15850	0.12	+0.7
3,443,006	+		DZA65_RS15850	0.23	-1.6
3,443,007	-		DZA65_RS15850	0.23	-0.8
3,443,007	-		DZA65_RS15850	0.23	-0.2
3,443,007	-		DZA65_RS15850	0.23	+0.6
3,443,226	-		DZA65_RS15850	0.53	+0.5
3,443,226	-		DZA65_RS15850	0.53	+1.6
3,443,268	+		DZA65_RS15850	0.58	+2.1
3,443,268	+		DZA65_RS15850	0.58	+0.7
3,443,269	-		DZA65_RS15850	0.59	-0.6
3,443,287	+		DZA65_RS15850	0.61	-1.8
3,443,287	+		DZA65_RS15850	0.61	+0.7
3,443,305	-		DZA65_RS15850	0.63	+0.4
3,443,331	+		DZA65_RS15850	0.67	+0.0
3,443,370	+		DZA65_RS15850	0.72	+0.7
3,443,370	+		DZA65_RS15850	0.72	-0.0
3,443,370	+		DZA65_RS15850	0.72	+0.8
3,443,370	+		DZA65_RS15850	0.72	+1.2
3,443,370	+		DZA65_RS15850	0.72	-0.0
3,443,371	-		DZA65_RS15850	0.72	-1.3
3,443,371	-		DZA65_RS15850	0.72	+0.4
3,443,371	-		DZA65_RS15850	0.72	+0.5
3,443,371	-		DZA65_RS15850	0.72	+1.0
3,443,371	-		DZA65_RS15850	0.72	+1.1