Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15645

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,398,212	+		DZA65_RS15640	0.30	-0.6
3,398,227	+		DZA65_RS15640	0.32	-0.9
3,398,227	+		DZA65_RS15640	0.32	+0.4
3,398,227	+		DZA65_RS15640	0.32	+0.6
3,398,228	-		DZA65_RS15640	0.32	-0.1
3,398,228	-		DZA65_RS15640	0.32	+0.3
3,398,236	+		DZA65_RS15640	0.32	-0.8
3,398,289	+		DZA65_RS15640	0.37	-1.2
3,398,289	+		DZA65_RS15640	0.37	+1.1
3,398,300	+		DZA65_RS15640	0.38	-0.2
3,398,300	+		DZA65_RS15640	0.38	+0.8
3,398,300	+		DZA65_RS15640	0.38	-0.9
3,398,301	-		DZA65_RS15640	0.38	+0.8
3,398,301	-		DZA65_RS15640	0.38	+0.7
3,398,366	+		DZA65_RS15640	0.43	+1.5
3,398,366	+		DZA65_RS15640	0.43	-0.1
3,398,366	+		DZA65_RS15640	0.43	+0.2
3,398,366	+		DZA65_RS15640	0.43	+0.2
3,398,366	+		DZA65_RS15640	0.43	-1.2
3,398,366	+		DZA65_RS15640	0.43	-1.4
3,398,366	+		DZA65_RS15640	0.43	-0.2
3,398,366	+		DZA65_RS15640	0.43	+0.1
3,398,367	-		DZA65_RS15640	0.43	+1.6
3,398,367	-		DZA65_RS15640	0.43	+0.1
3,398,367	-		DZA65_RS15640	0.43	-0.3
3,398,367	-		DZA65_RS15640	0.43	+0.1
3,398,367	-		DZA65_RS15640	0.43	-0.4
3,398,367	-		DZA65_RS15640	0.43	+0.7
3,398,367	-		DZA65_RS15640	0.43	+0.8
3,398,367	-		DZA65_RS15640	0.43	+0.7
3,398,367	-		DZA65_RS15640	0.43	+1.8
3,398,367	-		DZA65_RS15640	0.43	-1.2
3,398,367	-		DZA65_RS15640	0.43	+1.1
3,398,367	-		DZA65_RS15640	0.43	-0.3
3,398,367	-		DZA65_RS15640	0.43	+0.2
3,398,370	+		DZA65_RS15640	0.43	-0.4
3,398,370	+		DZA65_RS15640	0.43	-0.9
3,398,370	+		DZA65_RS15640	0.43	+0.2
3,398,466	+		DZA65_RS15640	0.51	-2.3
3,398,466	+		DZA65_RS15640	0.51	-0.8
3,398,466	+		DZA65_RS15640	0.51	+1.4
3,398,466	+		DZA65_RS15640	0.51	-0.7
3,398,467	-		DZA65_RS15640	0.51	-1.2
3,398,467	-		DZA65_RS15640	0.51	-3.1
3,398,467	-		DZA65_RS15640	0.51	-0.3
3,398,467	-		DZA65_RS15640	0.51	+0.3
3,398,540	+		DZA65_RS15640	0.58	+1.3
3,398,540	+		DZA65_RS15640	0.58	+0.8
3,398,545	-		DZA65_RS15640	0.58	-1.4
3,398,665	-		DZA65_RS15640	0.68	-2.0
3,398,790	-		DZA65_RS15640	0.78	-0.0
3,398,835	-		DZA65_RS15640	0.82	-1.5
3,399,064	+				+0.4
3,399,064	+				-0.9
3,399,064	+				-0.2
3,399,064	+				-0.2
3,399,064	+				-0.2
3,399,064	+				-0.2
3,399,064	+				-1.2
3,399,064	+				-0.2
3,399,064	+				-0.7
3,399,064	+				+0.8
3,399,064	+				-2.9
3,399,065	-				+0.8
3,399,065	-				+0.1
3,399,065	-				+0.6
3,399,065	-				+0.8
3,399,065	-				+0.3
3,399,065	-				-0.8
3,399,065	-				-1.2
3,399,065	-				-0.1
3,399,065	-				+0.3
3,399,065	-				-2.0
3,399,065	-				+0.5
3,399,065	-				-0.2
3,399,065	-				-0.5
3,399,065	-				-0.5
3,399,065	-				-1.2
3,399,065	-				-0.2
3,399,065	-				-0.7
3,399,065	-				-1.3
3,399,065	-				+0.5
3,399,065	-				-1.8
3,399,065	-				+0.3
3,399,066	+				-0.2
3,399,066	+				-0.8
3,399,075	+				-0.8
3,399,086	+				-0.8
3,399,086	+				-1.3
3,399,086	+				-2.2
3,399,086	+				-0.8
3,399,086	+				+0.1
3,399,086	+				+0.6
3,399,086	+				+0.1
3,399,086	+				-1.2
3,399,086	+				-1.4
3,399,086	+				-0.6
3,399,087	-				-1.6
3,399,087	-				+0.2
3,399,087	-				+0.8
3,399,087	-				+0.2
3,399,087	-				-0.6
3,399,087	-				+1.8
3,399,087	-				-1.3
3,399,087	-				-0.4
3,399,087	-				+0.4
3,399,129	+				-0.4
3,399,244	+		DZA65_RS15645	0.18	-2.2
3,399,253	+		DZA65_RS15645	0.19	+1.6
3,399,253	+		DZA65_RS15645	0.19	+0.4
3,399,253	+		DZA65_RS15645	0.19	-0.6
3,399,254	-		DZA65_RS15645	0.19	+2.4
3,399,368	-		DZA65_RS15645	0.30	+1.1
3,399,411	+		DZA65_RS15645	0.34	+0.8
3,399,411	+		DZA65_RS15645	0.34	-1.5
3,399,411	+		DZA65_RS15645	0.34	-0.2
3,399,411	+		DZA65_RS15645	0.34	-0.3
3,399,411	+		DZA65_RS15645	0.34	+0.1
3,399,411	+		DZA65_RS15645	0.34	-2.1
3,399,411	+		DZA65_RS15645	0.34	-0.2
3,399,411	+		DZA65_RS15645	0.34	-2.0
3,399,412	-		DZA65_RS15645	0.34	+0.8
3,399,412	-		DZA65_RS15645	0.34	-1.8
3,399,412	-		DZA65_RS15645	0.34	+0.8
3,399,412	-		DZA65_RS15645	0.34	-0.9
3,399,412	-		DZA65_RS15645	0.34	-0.2
3,399,419	+		DZA65_RS15645	0.34	-0.7
3,399,420	-		DZA65_RS15645	0.35	-1.5
3,399,420	-		DZA65_RS15645	0.35	-0.4
3,399,481	+		DZA65_RS15645	0.40	+0.4
3,399,482	-		DZA65_RS15645	0.40	+0.5
3,399,482	-		DZA65_RS15645	0.40	-1.0
3,399,482	-		DZA65_RS15645	0.40	-0.7
3,399,482	-		DZA65_RS15645	0.40	-1.0
3,399,482	-				-2.2
3,399,482	-		DZA65_RS15645	0.40	-2.3
3,399,505	+		DZA65_RS15645	0.42	-2.4
3,399,505	+		DZA65_RS15645	0.42	-1.3
3,399,505	+		DZA65_RS15645	0.42	+1.2
3,399,505	+		DZA65_RS15645	0.42	+0.0
3,399,505	+		DZA65_RS15645	0.42	-0.2
3,399,505	+		DZA65_RS15645	0.42	+0.8
3,399,510	+		DZA65_RS15645	0.43	-2.2
3,399,510	+		DZA65_RS15645	0.43	+1.8
3,399,510	+		DZA65_RS15645	0.43	-0.4
3,399,510	+		DZA65_RS15645	0.43	+1.8
3,399,510	+		DZA65_RS15645	0.43	+0.4
3,399,510	+		DZA65_RS15645	0.43	-1.4
3,399,510	+		DZA65_RS15645	0.43	-0.3
3,399,510	+		DZA65_RS15645	0.43	-1.2
3,399,510	+		DZA65_RS15645	0.43	-1.0
3,399,510	+		DZA65_RS15645	0.43	-0.7
3,399,510	+		DZA65_RS15645	0.43	+0.1
3,399,510	+		DZA65_RS15645	0.43	-2.4
3,399,510	+				-0.8
3,399,510	+		DZA65_RS15645	0.43	-1.4
3,399,510	+		DZA65_RS15645	0.43	+1.0
3,399,510	+		DZA65_RS15645	0.43	-2.9
3,399,510	+		DZA65_RS15645	0.43	+1.2
3,399,510	+		DZA65_RS15645	0.43	-1.1
3,399,510	+		DZA65_RS15645	0.43	-2.0
3,399,510	+		DZA65_RS15645	0.43	+0.2
3,399,510	+		DZA65_RS15645	0.43	-0.8
3,399,510	+		DZA65_RS15645	0.43	+0.8
3,399,510	+		DZA65_RS15645	0.43	-1.8
3,399,510	+		DZA65_RS15645	0.43	-1.2
3,399,510	+		DZA65_RS15645	0.43	-0.0
3,399,511	-		DZA65_RS15645	0.43	-0.8
3,399,511	-		DZA65_RS15645	0.43	+0.8
3,399,511	-		DZA65_RS15645	0.43	+0.8
3,399,511	-		DZA65_RS15645	0.43	-0.2
3,399,511	-		DZA65_RS15645	0.43	-0.6
3,399,511	-		DZA65_RS15645	0.43	+0.4
3,399,511	-		DZA65_RS15645	0.43	+0.2
3,399,511	-		DZA65_RS15645	0.43	-0.9
3,399,511	-		DZA65_RS15645	0.43	-0.9
3,399,511	-		DZA65_RS15645	0.43	-0.4
3,399,511	-		DZA65_RS15645	0.43	-2.7
3,399,511	-		DZA65_RS15645	0.43	-0.8
3,399,511	-		DZA65_RS15645	0.43	-2.4
3,399,511	-		DZA65_RS15645	0.43	-2.7
3,399,511	-		DZA65_RS15645	0.43	-2.0
3,399,511	-		DZA65_RS15645	0.43	-0.0
3,399,511	-		DZA65_RS15645	0.43	+0.5
3,399,511	-		DZA65_RS15645	0.43	+3.1
3,399,511	-		DZA65_RS15645	0.43	+0.2
3,399,511	-		DZA65_RS15645	0.43	-2.0
3,399,511	-		DZA65_RS15645	0.43	-0.8
3,399,511	-		DZA65_RS15645	0.43	-0.5
3,399,511	-		DZA65_RS15645	0.43	+0.8
3,399,511	-		DZA65_RS15645	0.43	+1.5
3,399,511	-		DZA65_RS15645	0.43	-0.2
3,399,511	-		DZA65_RS15645	0.43	-0.7
3,399,511	-		DZA65_RS15645	0.43	+0.3
3,399,511	-		DZA65_RS15645	0.43	-0.3
3,399,511	-		DZA65_RS15645	0.43	+0.1
3,399,511	-		DZA65_RS15645	0.43	-1.7
3,399,511	-		DZA65_RS15645	0.43	-1.9
3,399,635	+		DZA65_RS15645	0.54	-1.5
3,399,635	+		DZA65_RS15645	0.54	-1.0
3,399,649	-		DZA65_RS15645	0.56	-0.2
3,399,700	+		DZA65_RS15645	0.60	+0.8
3,399,701	-		DZA65_RS15645	0.61	+0.8
3,399,701	-		DZA65_RS15645	0.61	-0.7
3,399,706	+		DZA65_RS15645	0.61	-1.5
3,399,706	+		DZA65_RS15645	0.61	-0.8
3,399,706	+		DZA65_RS15645	0.61	+0.5
3,399,706	+		DZA65_RS15645	0.61	+0.2
3,399,707	-		DZA65_RS15645	0.61	-2.2
3,399,707	-		DZA65_RS15645	0.61	-0.4
3,399,707	-		DZA65_RS15645	0.61	-0.0
3,399,709	+		DZA65_RS15645	0.61	-0.8
3,399,709	+		DZA65_RS15645	0.61	-0.7
3,399,727	+		DZA65_RS15645	0.63	-0.2
3,399,727	+		DZA65_RS15645	0.63	-1.8
3,399,727	+		DZA65_RS15645	0.63	+0.2
3,399,727	+		DZA65_RS15645	0.63	-2.2
3,399,727	+		DZA65_RS15645	0.63	+0.8
3,399,728	-		DZA65_RS15645	0.63	-1.7
3,399,728	-		DZA65_RS15645	0.63	-0.6
3,399,736	+		DZA65_RS15645	0.64	+2.4
3,399,742	+		DZA65_RS15645	0.64	-2.2
3,399,742	+		DZA65_RS15645	0.64	-1.4
3,399,772	+		DZA65_RS15645	0.67	-2.0
3,399,772	+		DZA65_RS15645	0.67	-0.4
3,399,773	-		DZA65_RS15645	0.67	-0.8
3,399,910	+		DZA65_RS15645	0.80	-1.2
3,399,910	+		DZA65_RS15645	0.80	-3.1
3,399,911	-		DZA65_RS15645	0.80	+1.0
3,399,911	-		DZA65_RS15645	0.80	-1.8
3,399,944	+		DZA65_RS15645	0.83	+0.1
3,399,944	+		DZA65_RS15645	0.83	+2.0
3,399,945	-		DZA65_RS15645	0.83	-0.6
3,399,945	-		DZA65_RS15645	0.83	-0.7
3,399,978	+		DZA65_RS15645	0.86	-1.6
3,400,004	+		DZA65_RS15645	0.89	+0.8
3,400,004	+		DZA65_RS15645	0.89	-0.6
3,400,004	+		DZA65_RS15645	0.89	+0.1
3,400,004	+		DZA65_RS15645	0.89	-0.6
3,400,004	+		DZA65_RS15645	0.89	+0.4
3,400,004	+		DZA65_RS15645	0.89	-1.6
3,400,004	+		DZA65_RS15645	0.89	-2.2
3,400,005	-		DZA65_RS15645	0.89	+1.2
3,400,005	-		DZA65_RS15645	0.89	-0.8
3,400,045	+				-2.1
3,400,045	+				-0.5
3,400,046	-				-2.0
3,400,046	-				-3.4
3,400,046	-				+0.6
3,400,046	-				-1.8
3,400,048	+				+0.2
3,400,048	+				+0.2
3,400,185	+				-2.8
3,400,186	-				-0.5
3,400,186	-				-2.2
3,400,277	+		DZA65_RS15650	0.21	-1.2
3,400,277	+		DZA65_RS15650	0.21	-0.2
3,400,329	+		DZA65_RS15650	0.28	-1.3
3,400,344	+		DZA65_RS15650	0.30	-0.2
3,400,344	+		DZA65_RS15650	0.30	+0.1
3,400,344	+		DZA65_RS15650	0.30	-1.0
3,400,345	-		DZA65_RS15650	0.30	+0.8
3,400,345	-		DZA65_RS15650	0.30	+0.8
3,400,411	+		DZA65_RS15650	0.39	+0.5
3,400,411	+		DZA65_RS15650	0.39	-1.0
3,400,411	+		DZA65_RS15650	0.39	-1.0
3,400,412	-		DZA65_RS15650	0.39	+0.2
3,400,412	-		DZA65_RS15650	0.39	+0.8
3,400,412	-		DZA65_RS15650	0.39	-1.5
3,400,412	-		DZA65_RS15650	0.39	+0.8
3,400,412	-		DZA65_RS15650	0.39	+0.8
3,400,433	-		DZA65_RS15650	0.42	-0.1
3,400,444	+		DZA65_RS15650	0.43	-0.2
3,400,445	-		DZA65_RS15650	0.43	-0.2
3,400,484	+		DZA65_RS15650	0.49	-0.1
3,400,484	+		DZA65_RS15650	0.49	-0.9
3,400,485	-		DZA65_RS15650	0.49	+0.6
3,400,551	+		DZA65_RS15650	0.58	-0.0
3,400,551	+		DZA65_RS15650	0.58	+0.2
3,400,552	-		DZA65_RS15650	0.58	+1.1
3,400,552	-		DZA65_RS15650	0.58	-1.8
3,400,612	+		DZA65_RS15650	0.66	+0.5
3,400,612	+		DZA65_RS15650	0.66	-0.9
3,400,612	+		DZA65_RS15650	0.66	+0.6
3,400,612	+		DZA65_RS15650	0.66	-1.8
3,400,612	+		DZA65_RS15650	0.66	+0.1
3,400,612	+		DZA65_RS15650	0.66	-0.8
3,400,613	-		DZA65_RS15650	0.66	-1.4
3,400,613	-		DZA65_RS15650	0.66	-0.1
3,400,613	-		DZA65_RS15650	0.66	+0.2
3,400,613	-		DZA65_RS15650	0.66	+0.4
3,400,613	-		DZA65_RS15650	0.66	-0.5
3,400,613	-		DZA65_RS15650	0.66	-0.8
3,400,613	-		DZA65_RS15650	0.66	-2.6
3,400,631	+		DZA65_RS15650	0.69	+0.5
3,400,646	+		DZA65_RS15650	0.71	-0.5
3,400,647	-		DZA65_RS15650	0.71	+0.8
3,400,839	+				-0.5
3,400,840	-				+0.4
3,400,903	-		DZA65_RS15655	0.11	-0.8
3,400,950	+		DZA65_RS15655	0.24	+1.1
3,400,950	+		DZA65_RS15655	0.24	+0.1
3,400,951	-		DZA65_RS15655	0.24	-0.9
3,400,992	-		DZA65_RS15655	0.35	+0.8
3,400,992	-		DZA65_RS15655	0.35	+1.2
3,401,021	+		DZA65_RS15655	0.43	+0.1
3,401,022	-		DZA65_RS15655	0.43	-0.8
3,401,022	-		DZA65_RS15655	0.43	+1.7