Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14070

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,016,978	+		DZA65_RS14065	0.49	-0.7
3,016,978	+		DZA65_RS14065	0.49	-0.6
3,017,010	+		DZA65_RS14065	0.51	-1.3
3,017,010	+		DZA65_RS14065	0.51	-1.4
3,017,010	+		DZA65_RS14065	0.51	-1.3
3,017,010	+		DZA65_RS14065	0.51	-0.6
3,017,010	+		DZA65_RS14065	0.51	-1.6
3,017,010	+		DZA65_RS14065	0.51	-0.9
3,017,011	-		DZA65_RS14065	0.51	-1.9
3,017,011	-		DZA65_RS14065	0.51	+1.7
3,017,011	-		DZA65_RS14065	0.51	-2.4
3,017,011	-		DZA65_RS14065	0.51	-0.9
3,017,011	-		DZA65_RS14065	0.51	-1.9
3,017,014	+		DZA65_RS14065	0.51	-0.9
3,017,014	+		DZA65_RS14065	0.51	-0.3
3,017,014	+		DZA65_RS14065	0.51	-0.1
3,017,014	+		DZA65_RS14065	0.51	-0.8
3,017,014	+		DZA65_RS14065	0.51	-0.1
3,017,015	-		DZA65_RS14065	0.51	-0.7
3,017,015	-		DZA65_RS14065	0.51	-1.2
3,017,015	-		DZA65_RS14065	0.51	-2.5
3,017,015	-		DZA65_RS14065	0.51	-0.6
3,017,015	-		DZA65_RS14065	0.51	-0.3
3,017,050	+		DZA65_RS14065	0.53	+0.7
3,017,051	-		DZA65_RS14065	0.53	-1.2
3,017,080	+		DZA65_RS14065	0.55	-1.9
3,017,080	+		DZA65_RS14065	0.55	-1.2
3,017,150	-		DZA65_RS14065	0.59	-0.5
3,017,150	-		DZA65_RS14065	0.59	+0.6
3,017,150	-		DZA65_RS14065	0.59	+0.7
3,017,158	+		DZA65_RS14065	0.60	-0.5
3,017,158	+		DZA65_RS14065	0.60	-0.9
3,017,159	-		DZA65_RS14065	0.60	-0.9
3,017,173	+		DZA65_RS14065	0.60	-1.6
3,017,174	-		DZA65_RS14065	0.60	-1.9
3,017,174	-		DZA65_RS14065	0.60	-0.6
3,017,177	+		DZA65_RS14065	0.61	+0.9
3,017,177	+		DZA65_RS14065	0.61	-0.2
3,017,177	+		DZA65_RS14065	0.61	-1.6
3,017,178	-		DZA65_RS14065	0.61	-0.1
3,017,178	-		DZA65_RS14065	0.61	-1.0
3,017,188	+		DZA65_RS14065	0.61	-0.3
3,017,241	-		DZA65_RS14065	0.64	-1.6
3,017,252	+		DZA65_RS14065	0.65	-0.6
3,017,264	+		DZA65_RS14065	0.66	-1.9
3,017,264	+		DZA65_RS14065	0.66	-2.3
3,017,287	+		DZA65_RS14065	0.67	-0.4
3,017,322	+		DZA65_RS14065	0.69	+1.0
3,017,334	+		DZA65_RS14065	0.70	-2.3
3,017,340	+		DZA65_RS14065	0.70	-2.0
3,017,340	+		DZA65_RS14065	0.70	-2.0
3,017,343	+		DZA65_RS14065	0.70	-0.9
3,017,344	-		DZA65_RS14065	0.70	-1.1
3,017,344	-		DZA65_RS14065	0.70	-0.9
3,017,411	-		DZA65_RS14065	0.74	+0.7
3,017,416	+		DZA65_RS14065	0.75	+0.9
3,017,457	+		DZA65_RS14065	0.77	-1.6
3,017,457	+		DZA65_RS14065	0.77	-2.3
3,017,457	+		DZA65_RS14065	0.77	+0.7
3,017,457	+		DZA65_RS14065	0.77	-0.1
3,017,457	+		DZA65_RS14065	0.77	-1.5
3,017,458	-		DZA65_RS14065	0.77	-0.3
3,017,458	-		DZA65_RS14065	0.77	-1.3
3,017,458	-		DZA65_RS14065	0.77	-0.9
3,017,461	+		DZA65_RS14065	0.77	+1.0
3,017,462	-		DZA65_RS14065	0.77	+1.0
3,017,462	-		DZA65_RS14065	0.77	-0.6
3,017,503	+		DZA65_RS14065	0.80	+0.1
3,017,503	+		DZA65_RS14065	0.80	-2.3
3,017,520	+		DZA65_RS14065	0.81	-1.2
3,017,537	-		DZA65_RS14065	0.82	+1.0
3,017,620	+		DZA65_RS14065	0.87	-0.3
3,017,621	-		DZA65_RS14065	0.87	+0.1
3,017,625	+		DZA65_RS14065	0.87	-2.6
3,017,625	+		DZA65_RS14065	0.87	+0.3
3,017,626	-		DZA65_RS14065	0.87	-1.6
3,017,626	-		DZA65_RS14065	0.87	-1.3
3,017,664	-		DZA65_RS14065	0.89	-0.3
3,017,666	+		DZA65_RS14065	0.89	-1.2
3,017,670	+		DZA65_RS14065	0.90	+1.0
3,017,671	-		DZA65_RS14065	0.90	-3.1
3,017,681	-				-1.9
3,017,731	+				-1.9
3,017,795	+				-1.9
3,017,795	+				-0.0
3,017,849	-				-1.3
3,017,858	+				-1.5
3,017,858	+				-1.9
3,017,859	-				+0.7
3,017,859	-				+0.1
3,017,957	+				-2.8
3,017,957	+				+1.3
3,017,958	-				-0.9
3,017,958	-				-3.3
3,017,981	+				-2.4
3,017,982	-				-0.9
3,017,982	-				+0.7
3,018,013	-				-0.9
3,018,073	+		DZA65_RS14070	0.22	-1.9
3,018,074	-		DZA65_RS14070	0.22	-1.9
3,018,147	+		DZA65_RS14070	0.37	-2.0
3,018,147	+		DZA65_RS14070	0.37	-3.2
3,018,148	-		DZA65_RS14070	0.37	-1.9
3,018,148	-		DZA65_RS14070	0.37	-4.7
3,018,148	-		DZA65_RS14070	0.37	-3.4
3,018,171	+		DZA65_RS14070	0.42	+0.3
3,018,206	+		DZA65_RS14070	0.49	-3.4
3,018,207	-		DZA65_RS14070	0.49	+0.3
3,018,207	-		DZA65_RS14070	0.49	-3.0
3,018,207	-		DZA65_RS14070	0.49	-1.9
3,018,217	+		DZA65_RS14070	0.51	-1.9
3,018,218	-		DZA65_RS14070	0.51	-2.2
3,018,218	-		DZA65_RS14070	0.51	-3.8
3,018,218	-		DZA65_RS14070	0.51	-1.6
3,018,296	+		DZA65_RS14070	0.67	-1.6
3,018,305	+		DZA65_RS14070	0.68	-1.0
3,018,306	-		DZA65_RS14070	0.69	-1.6
3,018,306	-		DZA65_RS14070	0.69	-2.6
3,018,377	-		DZA65_RS14070	0.83	-3.0
3,018,417	+				-2.1
3,018,417	+				-3.6
3,018,417	+				-3.4
3,018,418	-				-1.6
3,018,418	-				-3.0
3,018,479	+				-1.5
3,018,479	+				-2.5
3,018,479	+				-0.7
3,018,479	+				-2.5
3,018,479	+				-0.9
3,018,480	-				-1.6
3,018,480	-				-2.6
3,018,480	-				-1.6
3,018,480	-				-2.6
3,018,480	-				-0.9
3,018,480	-				-0.6
3,018,480	-				-1.1
3,018,481	+				-1.3
3,018,481	+				-1.9
3,018,481	+				+1.1
3,018,481	+				-1.6
3,018,487	+				-2.8
3,018,487	+				-4.1
3,018,487	+				-1.9
3,018,487	+				-2.1
3,018,487	+				-2.6
3,018,487	+				-0.9
3,018,487	+				-2.3
3,018,488	-				-1.3
3,018,498	+				-0.1
3,018,498	+				-1.6
3,018,499	-				+0.0
3,018,557	+				-3.4
3,018,558	-				-0.3
3,018,558	-				-1.6
3,018,558	-				-1.7
3,018,558	-				-1.6
3,018,575	-				-2.5
3,018,590	-				-2.6
3,018,590	-				+0.1
3,018,590	-				-1.6
3,018,621	+				-1.8
3,018,768	+		DZA65_RS14075	0.13	-0.3
3,018,769	-				-0.9
3,018,789	+		DZA65_RS14075	0.14	-1.9
3,018,789	+		DZA65_RS14075	0.14	-2.9
3,018,790	-		DZA65_RS14075	0.14	-0.9
3,018,790	-		DZA65_RS14075	0.14	-0.6
3,018,835	-		DZA65_RS14075	0.17	-3.2
3,018,835	-		DZA65_RS14075	0.17	-2.6
3,018,877	+		DZA65_RS14075	0.19	-2.6
3,018,889	+		DZA65_RS14075	0.19	-2.1
3,018,890	-		DZA65_RS14075	0.19	-2.0
3,018,890	-		DZA65_RS14075	0.19	-2.1
3,018,893	+		DZA65_RS14075	0.20	-0.9
3,018,893	+		DZA65_RS14075	0.20	-2.1
3,018,893	+		DZA65_RS14075	0.20	+1.2
3,018,893	+		DZA65_RS14075	0.20	-0.6
3,018,893	+		DZA65_RS14075	0.20	-3.2
3,018,893	+		DZA65_RS14075	0.20	-2.1
3,018,893	+		DZA65_RS14075	0.20	-1.6
3,018,893	+		DZA65_RS14075	0.20	-2.6
3,018,894	-		DZA65_RS14075	0.20	-3.3
3,018,894	-		DZA65_RS14075	0.20	-2.6
3,018,894	-		DZA65_RS14075	0.20	-2.3
3,019,039	+		DZA65_RS14075	0.27	-3.2
3,019,039	+		DZA65_RS14075	0.27	-1.6
3,019,040	-		DZA65_RS14075	0.27	-3.1
3,019,081	+		DZA65_RS14075	0.29	-3.0
3,019,157	+		DZA65_RS14075	0.33	-3.3
3,019,157	+		DZA65_RS14075	0.33	-2.5
3,019,174	+		DZA65_RS14075	0.33	-1.7
3,019,174	+		DZA65_RS14075	0.33	-1.9
3,019,174	+		DZA65_RS14075	0.33	-0.5
3,019,175	-		DZA65_RS14075	0.33	-1.6
3,019,175	-		DZA65_RS14075	0.33	-3.4
3,019,175	-		DZA65_RS14075	0.33	-0.0
3,019,222	+		DZA65_RS14075	0.36	-3.3
3,019,222	+		DZA65_RS14075	0.36	-3.7
3,019,222	+		DZA65_RS14075	0.36	-0.9
3,019,222	+		DZA65_RS14075	0.36	-0.3
3,019,222	+		DZA65_RS14075	0.36	-0.3
3,019,222	+		DZA65_RS14075	0.36	-1.2
3,019,223	-		DZA65_RS14075	0.36	-1.4
3,019,223	-		DZA65_RS14075	0.36	-1.5
3,019,223	-		DZA65_RS14075	0.36	+0.3
3,019,223	-		DZA65_RS14075	0.36	-2.2
3,019,225	+		DZA65_RS14075	0.36	-1.3
3,019,226	-		DZA65_RS14075	0.36	-1.6
3,019,226	-		DZA65_RS14075	0.36	-1.9
3,019,226	-		DZA65_RS14075	0.36	-1.5
3,019,226	-		DZA65_RS14075	0.36	-4.8
3,019,324	+		DZA65_RS14075	0.41	-2.5
3,019,325	-		DZA65_RS14075	0.41	-2.5
3,019,372	+		DZA65_RS14075	0.43	-3.9
3,019,373	-		DZA65_RS14075	0.43	-0.6
3,019,373	-		DZA65_RS14075	0.43	-2.6