Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13900

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,986,052	+		DZA65_RS13895	0.43	-2.7
2,986,052	+		DZA65_RS13895	0.43	-0.3
2,986,052	+		DZA65_RS13895	0.43	-3.1
2,986,053	-		DZA65_RS13895	0.43	-0.9
2,986,053	-		DZA65_RS13895	0.43	-0.9
2,986,053	-		DZA65_RS13895	0.43	+1.3
2,986,086	+		DZA65_RS13895	0.45	-2.3
2,986,086	+		DZA65_RS13895	0.45	-2.4
2,986,086	+		DZA65_RS13895	0.45	-3.6
2,986,087	-		DZA65_RS13895	0.45	-0.9
2,986,171	+		DZA65_RS13895	0.50	-3.8
2,986,172	-		DZA65_RS13895	0.50	-3.3
2,986,172	-		DZA65_RS13895	0.50	-2.4
2,986,245	+		DZA65_RS13895	0.54	-2.0
2,986,245	+		DZA65_RS13895	0.54	-3.1
2,986,245	+		DZA65_RS13895	0.54	-3.6
2,986,245	+		DZA65_RS13895	0.54	-3.0
2,986,245	+		DZA65_RS13895	0.54	-2.8
2,986,245	+		DZA65_RS13895	0.54	-0.9
2,986,245	+		DZA65_RS13895	0.54	-4.5
2,986,245	+		DZA65_RS13895	0.54	-2.5
2,986,246	-		DZA65_RS13895	0.54	-2.1
2,986,246	-		DZA65_RS13895	0.54	-2.9
2,986,246	-		DZA65_RS13895	0.54	-3.5
2,986,246	-		DZA65_RS13895	0.54	-1.0
2,986,246	-		DZA65_RS13895	0.54	-1.9
2,986,246	-		DZA65_RS13895	0.54	-1.1
2,986,246	-				-2.1
2,986,246	-		DZA65_RS13895	0.54	-1.1
2,986,273	+		DZA65_RS13895	0.56	-1.6
2,986,273	+		DZA65_RS13895	0.56	-3.7
2,986,274	-		DZA65_RS13895	0.56	-0.9
2,986,274	-		DZA65_RS13895	0.56	-3.2
2,986,300	+		DZA65_RS13895	0.57	-1.5
2,986,300	+				-2.1
2,986,300	+		DZA65_RS13895	0.57	-1.9
2,986,301	-		DZA65_RS13895	0.57	-3.7
2,986,301	-		DZA65_RS13895	0.57	-0.3
2,986,301	-		DZA65_RS13895	0.57	-2.1
2,986,330	+		DZA65_RS13895	0.59	-3.6
2,986,330	+		DZA65_RS13895	0.59	-3.5
2,986,330	+		DZA65_RS13895	0.59	-2.6
2,986,331	-		DZA65_RS13895	0.59	+0.4
2,986,331	-		DZA65_RS13895	0.59	-3.5
2,986,339	+		DZA65_RS13895	0.60	-2.9
2,986,339	+		DZA65_RS13895	0.60	-2.5
2,986,340	-		DZA65_RS13895	0.60	-5.2
2,986,340	-		DZA65_RS13895	0.60	-4.2
2,986,384	+		DZA65_RS13895	0.62	-3.7
2,986,384	+		DZA65_RS13895	0.62	-3.4
2,986,385	-		DZA65_RS13895	0.62	-1.3
2,986,385	-		DZA65_RS13895	0.62	-3.7
2,986,385	-		DZA65_RS13895	0.62	-3.3
2,986,385	-		DZA65_RS13895	0.62	-2.6
2,986,385	-		DZA65_RS13895	0.62	-1.6
2,986,385	-		DZA65_RS13895	0.62	-3.2
2,986,424	+		DZA65_RS13895	0.64	-1.6
2,986,424	+		DZA65_RS13895	0.64	-2.1
2,986,424	+		DZA65_RS13895	0.64	-2.2
2,986,424	+		DZA65_RS13895	0.64	+0.9
2,986,424	+		DZA65_RS13895	0.64	-2.8
2,986,424	+		DZA65_RS13895	0.64	-0.3
2,986,425	-		DZA65_RS13895	0.65	-1.3
2,986,425	-		DZA65_RS13895	0.65	-4.0
2,986,425	-		DZA65_RS13895	0.65	-0.3
2,986,425	-		DZA65_RS13895	0.65	+1.9
2,986,425	-		DZA65_RS13895	0.65	-1.6
2,986,425	-		DZA65_RS13895	0.65	-2.4
2,986,425	-		DZA65_RS13895	0.65	-1.6
2,986,425	-		DZA65_RS13895	0.65	-2.8
2,986,425	-		DZA65_RS13895	0.65	-1.1
2,986,447	+		DZA65_RS13895	0.66	-4.0
2,986,447	+		DZA65_RS13895	0.66	-0.9
2,986,447	+		DZA65_RS13895	0.66	-1.3
2,986,448	-		DZA65_RS13895	0.66	-2.5
2,986,448	-		DZA65_RS13895	0.66	-3.2
2,986,454	+		DZA65_RS13895	0.66	-3.5
2,986,454	+		DZA65_RS13895	0.66	-2.1
2,986,454	+		DZA65_RS13895	0.66	-0.4
2,986,454	+		DZA65_RS13895	0.66	-2.2
2,986,454	+		DZA65_RS13895	0.66	-2.3
2,986,455	-		DZA65_RS13895	0.66	-3.0
2,986,455	-		DZA65_RS13895	0.66	-2.9
2,986,455	-		DZA65_RS13895	0.66	-2.1
2,986,455	-		DZA65_RS13895	0.66	-0.9
2,986,455	-		DZA65_RS13895	0.66	-2.9
2,986,455	-		DZA65_RS13895	0.66	-0.6
2,986,455	-		DZA65_RS13895	0.66	-1.6
2,986,455	-		DZA65_RS13895	0.66	-1.6
2,986,501	+		DZA65_RS13895	0.69	-1.6
2,986,501	+		DZA65_RS13895	0.69	-4.1
2,986,501	+		DZA65_RS13895	0.69	-2.3
2,986,502	-		DZA65_RS13895	0.69	-1.3
2,986,502	-		DZA65_RS13895	0.69	-3.4
2,986,502	-		DZA65_RS13895	0.69	-1.9
2,986,502	-		DZA65_RS13895	0.69	-0.8
2,986,531	+		DZA65_RS13895	0.71	-2.2
2,986,532	-		DZA65_RS13895	0.71	-2.3
2,986,532	-		DZA65_RS13895	0.71	-1.9
2,986,532	-		DZA65_RS13895	0.71	-2.1
2,986,532	-		DZA65_RS13895	0.71	-2.3
2,986,535	+		DZA65_RS13895	0.71	-2.1
2,986,535	+		DZA65_RS13895	0.71	-1.3
2,986,535	+		DZA65_RS13895	0.71	-2.4
2,986,535	+		DZA65_RS13895	0.71	-1.3
2,986,535	+		DZA65_RS13895	0.71	-2.6
2,986,535	+		DZA65_RS13895	0.71	-0.3
2,986,535	+		DZA65_RS13895	0.71	-2.5
2,986,536	-		DZA65_RS13895	0.71	-4.1
2,986,536	-		DZA65_RS13895	0.71	-2.5
2,986,536	-		DZA65_RS13895	0.71	-3.2
2,986,536	-		DZA65_RS13895	0.71	-1.5
2,986,536	-		DZA65_RS13895	0.71	+0.4
2,986,536	-		DZA65_RS13895	0.71	-3.9
2,986,536	-		DZA65_RS13895	0.71	-2.8
2,986,615	+		DZA65_RS13895	0.76	-1.9
2,986,616	-		DZA65_RS13895	0.76	-3.1
2,986,657	+		DZA65_RS13895	0.78	-0.3
2,986,658	-		DZA65_RS13895	0.78	-0.9
2,986,660	+		DZA65_RS13895	0.78	-2.2
2,986,660	+		DZA65_RS13895	0.78	-0.6
2,986,660	+		DZA65_RS13895	0.78	-1.2
2,986,660	+		DZA65_RS13895	0.78	-2.6
2,986,661	-		DZA65_RS13895	0.78	-2.3
2,986,661	-		DZA65_RS13895	0.78	-2.1
2,986,661	-		DZA65_RS13895	0.78	-0.3
2,986,661	-		DZA65_RS13895	0.78	-3.0
2,986,661	-		DZA65_RS13895	0.78	+0.7
2,986,661	-		DZA65_RS13895	0.78	-1.6
2,986,661	-		DZA65_RS13895	0.78	-3.6
2,986,661	-		DZA65_RS13895	0.78	-2.0
2,986,661	-		DZA65_RS13895	0.78	-0.9
2,986,661	-		DZA65_RS13895	0.78	-2.9
2,986,661	-		DZA65_RS13895	0.78	-2.2
2,986,661	-		DZA65_RS13895	0.78	-3.9
2,986,661	-		DZA65_RS13895	0.78	-3.9
2,986,661	-		DZA65_RS13895	0.78	+0.7
2,986,661	-		DZA65_RS13895	0.78	-0.5
2,986,785	-		DZA65_RS13895	0.85	-3.4
2,986,785	-		DZA65_RS13895	0.85	-1.1
2,986,789	+		DZA65_RS13895	0.86	-2.1
2,986,789	+		DZA65_RS13895	0.86	-3.4
2,986,789	+		DZA65_RS13895	0.86	-3.5
2,986,790	-		DZA65_RS13895	0.86	-1.7
2,986,790	-		DZA65_RS13895	0.86	-1.9
2,986,790	-		DZA65_RS13895	0.86	-2.9
2,986,790	-		DZA65_RS13895	0.86	-2.8
2,986,790	-		DZA65_RS13895	0.86	-1.0
2,986,897	+				-3.1
2,986,897	+				-1.3
2,986,898	-				-1.9
2,986,898	-				-2.0
2,986,898	-				-2.1
2,986,898	-				-2.5
2,986,898	-				-1.8
2,986,898	-				-2.5
2,986,898	-				-4.8
2,986,911	+				-1.9
2,986,911	+				+0.7
2,986,911	+				-2.9
2,986,911	+				-2.8
2,986,911	+				-3.4
2,986,911	+				-1.1
2,986,912	-				-2.3
2,986,912	-				-2.6
2,987,005	-				-2.1
2,987,023	+				-2.3
2,987,024	-				-3.4
2,987,031	+				-3.5
2,987,031	+				-2.8
2,987,031	+				-2.9
2,987,031	+				-2.5
2,987,031	+				-2.5
2,987,031	+				-2.6
2,987,032	-				-2.1
2,987,032	-				-2.1
2,987,032	-				-2.1
2,987,032	-				-2.6
2,987,032	-				-1.3
2,987,046	+				-2.4
2,987,047	-				-6.1
2,987,047	-				-2.1
2,987,066	+				+0.1
2,987,067	-				-1.3
2,987,067	-				-3.3
2,987,076	+				-2.9
2,987,107	-				-2.8
2,987,142	+		DZA65_RS13900	0.11	-2.5
2,987,224	+		DZA65_RS13900	0.19	-4.5
2,987,224	+		DZA65_RS13900	0.19	-2.9
2,987,224	+		DZA65_RS13900	0.19	-2.9
2,987,224	+		DZA65_RS13900	0.19	-2.3
2,987,225	-		DZA65_RS13900	0.19	-0.2
2,987,255	-		DZA65_RS13900	0.22	-3.6
2,987,255	-		DZA65_RS13900	0.22	-1.3
2,987,316	+		DZA65_RS13900	0.29	-1.3
2,987,316	+		DZA65_RS13900	0.29	-2.8
2,987,316	+		DZA65_RS13900	0.29	-0.9
2,987,317	-		DZA65_RS13900	0.29	-1.3
2,987,317	-		DZA65_RS13900	0.29	+0.7
2,987,415	+		DZA65_RS13900	0.39	-3.4
2,987,416	-		DZA65_RS13900	0.39	-1.6
2,987,460	+		DZA65_RS13900	0.43	-2.3
2,987,490	+		DZA65_RS13900	0.46	-1.9
2,987,619	+		DZA65_RS13900	0.59	-3.5
2,987,620	-		DZA65_RS13900	0.59	-0.9
2,987,620	-		DZA65_RS13900	0.59	-1.6
2,987,902	-		DZA65_RS13900	0.88	-3.0
2,987,915	+		DZA65_RS13900	0.89	-2.8
2,987,916	-		DZA65_RS13900	0.89	-4.1
2,987,919	+		DZA65_RS13900	0.89	-0.3
2,987,919	+		DZA65_RS13900	0.89	-1.3
2,987,919	+		DZA65_RS13900	0.89	-1.5
2,987,919	+		DZA65_RS13900	0.89	+1.4
2,987,919	+		DZA65_RS13900	0.89	-0.3
2,987,919	+		DZA65_RS13900	0.89	-2.8
2,987,919	+		DZA65_RS13900	0.89	-2.0
2,987,919	+		DZA65_RS13900	0.89	-3.1
2,987,919	+		DZA65_RS13900	0.89	-2.4
2,987,919	+		DZA65_RS13900	0.89	-2.5
2,987,919	+		DZA65_RS13900	0.89	-2.8
2,987,919	+		DZA65_RS13900	0.89	-1.6
2,987,919	+		DZA65_RS13900	0.89	-0.9
2,987,919	+		DZA65_RS13900	0.89	-2.5
2,987,919	+		DZA65_RS13900	0.89	-3.5
2,987,920	-		DZA65_RS13900	0.89	-2.3
2,987,920	-		DZA65_RS13900	0.89	-2.6
2,987,920	-		DZA65_RS13900	0.89	-4.7
2,987,920	-		DZA65_RS13900	0.89	-2.5
2,987,920	-		DZA65_RS13900	0.89	-3.1
2,987,920	-		DZA65_RS13900	0.89	-2.9
2,987,920	-		DZA65_RS13900	0.89	-2.5
2,987,920	-		DZA65_RS13900	0.89	-2.5
2,987,920	-		DZA65_RS13900	0.89	-1.9
2,987,920	-		DZA65_RS13900	0.89	+0.1
2,987,920	-		DZA65_RS13900	0.89	-2.6
2,987,920	-		DZA65_RS13900	0.89	-6.2
2,987,920	-		DZA65_RS13900	0.89	-2.5
2,987,920	-		DZA65_RS13900	0.89	-1.1
2,987,920	-		DZA65_RS13900	0.89	-1.1
2,987,920	-		DZA65_RS13900	0.89	-3.9
2,987,920	-		DZA65_RS13900	0.89	-2.8
2,987,920	-		DZA65_RS13900	0.89	-3.1
2,987,920	-		DZA65_RS13900	0.89	-1.6
2,987,920	-		DZA65_RS13900	0.89	-2.8
2,987,920	-		DZA65_RS13900	0.89	-1.1
2,987,920	-		DZA65_RS13900	0.89	-1.3
2,987,920	-		DZA65_RS13900	0.89	-2.8
2,987,920	-		DZA65_RS13900	0.89	+0.1
2,987,920	-		DZA65_RS13900	0.89	-2.0
2,987,920	-		DZA65_RS13900	0.89	-1.9
2,987,920	-		DZA65_RS13900	0.89	-3.3
2,987,920	-		DZA65_RS13900	0.89	-3.0
2,987,920	-		DZA65_RS13900	0.89	-4.3
2,987,920	-		DZA65_RS13900	0.89	-2.3
2,987,920	-		DZA65_RS13900	0.89	+0.4
2,987,920	-		DZA65_RS13900	0.89	-2.5
2,987,920	-		DZA65_RS13900	0.89	-2.4
2,987,963	+				-0.7
2,987,963	+				-1.9
2,987,963	+				-2.5
2,987,963	+				-3.3
2,987,963	+				-3.0
2,987,963	+				-0.9
2,987,963	+				-1.3
2,987,963	+				-1.8
2,987,963	+				-0.5
2,987,963	+				-1.9
2,987,964	-				-3.2
2,987,964	-				-3.5
2,987,964	-				-1.9
2,987,964	-				-2.8
2,987,964	-				-2.6
2,987,964	-				-0.3
2,987,964	-				-2.7
2,987,964	-				+0.7
2,987,964	-				+1.0
2,987,964	-				-1.6
2,987,964	-				-2.3
2,987,964	-				-1.6
2,987,994	+				-2.3
2,987,994	+				-2.3
2,987,995	-				-2.1
2,988,023	-				-4.7
2,988,023	-				-2.8
2,988,219	+		DZA65_RS13905	0.27	+1.4
2,988,219	+		DZA65_RS13905	0.27	-1.9
2,988,219	+		DZA65_RS13905	0.27	-2.4
2,988,220	-		DZA65_RS13905	0.28	-1.6
2,988,220	-		DZA65_RS13905	0.28	-3.2
2,988,269	+		DZA65_RS13905	0.34	-3.0
2,988,318	+		DZA65_RS13905	0.41	-3.2
2,988,318	+		DZA65_RS13905	0.41	-3.3
2,988,318	+		DZA65_RS13905	0.41	-2.3
2,988,319	-		DZA65_RS13905	0.41	-5.9
2,988,413	-		DZA65_RS13905	0.54	-3.4
2,988,496	-		DZA65_RS13905	0.65	-3.3
2,988,496	-		DZA65_RS13905	0.65	-3.0
2,988,507	+		DZA65_RS13905	0.66	-4.3
2,988,507	+		DZA65_RS13905	0.66	-2.8
2,988,507	+		DZA65_RS13905	0.66	-1.1
2,988,507	+		DZA65_RS13905	0.66	-0.3
2,988,508	-		DZA65_RS13905	0.67	-0.6
2,988,508	-		DZA65_RS13905	0.67	-1.3
2,988,508	-				+0.1
2,988,508	-		DZA65_RS13905	0.67	-2.0
2,988,508	-		DZA65_RS13905	0.67	-3.5
2,988,508	-		DZA65_RS13905	0.67	-2.5
2,988,508	-		DZA65_RS13905	0.67	-1.6
2,988,508	-		DZA65_RS13905	0.67	-2.8
2,988,508	-		DZA65_RS13905	0.67	-1.3
2,988,561	+		DZA65_RS13905	0.74	-1.4
2,988,561	+		DZA65_RS13905	0.74	-2.6
2,988,561	+		DZA65_RS13905	0.74	+0.7
2,988,561	+		DZA65_RS13905	0.74	-2.9
2,988,561	+		DZA65_RS13905	0.74	-3.0
2,988,562	-		DZA65_RS13905	0.74	-0.9
2,988,562	-		DZA65_RS13905	0.74	-1.8
2,988,562	-		DZA65_RS13905	0.74	-2.3
2,988,562	-		DZA65_RS13905	0.74	-2.3
2,988,562	-		DZA65_RS13905	0.74	-2.3
2,988,562	-		DZA65_RS13905	0.74	-4.2
2,988,562	-		DZA65_RS13905	0.74	-2.1
2,988,562	-		DZA65_RS13905	0.74	-2.3
2,988,605	-		DZA65_RS13905	0.80	-2.6
2,988,611	-		DZA65_RS13905	0.80	-1.3
2,988,786	+				-1.9
2,988,786	+				-3.1
2,988,786	+				-3.7
2,988,786	+				-1.9
2,988,786	+				-3.7
2,988,786	+				-2.3
2,988,786	+				-3.2
2,988,786	+				-2.5
2,988,786	+				-3.6
2,988,787	-				-1.3
2,988,787	-				-0.9
2,988,787	-				-2.0
2,988,787	-				-1.9
2,988,787	-				-2.5
2,988,787	-				-4.1
2,988,787	-				-1.9
2,988,816	+				-3.3
2,988,827	+				-2.2
2,988,828	-				-2.2
2,988,835	+				-4.5
2,988,888	+				-2.0
2,988,888	+				-0.3
2,988,888	+				-2.9
2,988,888	+				-0.9
2,988,889	-				-1.9
2,988,947	+		DZA65_RS13910	0.14	-4.4
2,988,947	+		DZA65_RS13910	0.14	-3.3
2,988,947	+		DZA65_RS13910	0.14	-2.9
2,988,948	-		DZA65_RS13910	0.14	-2.6
2,988,948	-		DZA65_RS13910	0.14	-0.3
2,988,948	-		DZA65_RS13910	0.14	-1.9
2,988,948	-		DZA65_RS13910	0.14	-2.5
2,988,948	-		DZA65_RS13910	0.14	-3.1
2,988,991	-		DZA65_RS13910	0.17	-3.8
2,988,991	-		DZA65_RS13910	0.17	-2.1