Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13855

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,973,227	+		DZA65_RS13850	0.12	+2.3
2,973,227	+		DZA65_RS13850	0.12	-1.4
2,973,228	-		DZA65_RS13850	0.12	-0.6
2,973,228	-		DZA65_RS13850	0.12	+1.7
2,973,228	-		DZA65_RS13850	0.12	-2.1
2,973,230	+		DZA65_RS13850	0.13	-0.4
2,973,230	+		DZA65_RS13850	0.13	-1.7
2,973,230	+		DZA65_RS13850	0.13	+0.7
2,973,230	+		DZA65_RS13850	0.13	+0.0
2,973,230	+		DZA65_RS13850	0.13	-1.0
2,973,231	-		DZA65_RS13850	0.13	+0.0
2,973,231	-		DZA65_RS13850	0.13	-0.9
2,973,231	-		DZA65_RS13850	0.13	-0.9
2,973,231	-		DZA65_RS13850	0.13	-1.9
2,973,231	-		DZA65_RS13850	0.13	-0.3
2,973,231	-		DZA65_RS13850	0.13	-2.9
2,973,249	+		DZA65_RS13850	0.14	-0.5
2,973,250	-		DZA65_RS13850	0.14	-2.1
2,973,273	+		DZA65_RS13850	0.16	+0.5
2,973,284	+		DZA65_RS13850	0.17	-0.9
2,973,284	+		DZA65_RS13850	0.17	-0.3
2,973,284	+		DZA65_RS13850	0.17	-0.3
2,973,284	+		DZA65_RS13850	0.17	-1.3
2,973,284	+		DZA65_RS13850	0.17	-0.3
2,973,284	+		DZA65_RS13850	0.17	-1.3
2,973,284	+		DZA65_RS13850	0.17	-0.3
2,973,285	-		DZA65_RS13850	0.17	-2.5
2,973,335	+		DZA65_RS13850	0.22	-0.3
2,973,335	+		DZA65_RS13850	0.22	-1.6
2,973,335	+		DZA65_RS13850	0.22	-1.2
2,973,336	-		DZA65_RS13850	0.22	-1.1
2,973,351	+		DZA65_RS13850	0.23	-3.1
2,973,352	-		DZA65_RS13850	0.23	-0.9
2,973,413	+		DZA65_RS13850	0.29	-0.8
2,973,414	-		DZA65_RS13850	0.29	-1.6
2,973,461	+		DZA65_RS13850	0.33	-1.7
2,973,461	+		DZA65_RS13850	0.33	-0.0
2,973,462	-		DZA65_RS13850	0.33	-1.2
2,973,462	-		DZA65_RS13850	0.33	-3.2
2,973,468	-		DZA65_RS13850	0.34	+0.7
2,973,501	+		DZA65_RS13850	0.36	-1.0
2,973,502	-		DZA65_RS13850	0.37	-1.3
2,973,502	-		DZA65_RS13850	0.37	-1.3
2,973,502	-		DZA65_RS13850	0.37	-0.9
2,973,502	-		DZA65_RS13850	0.37	-0.5
2,973,514	-		DZA65_RS13850	0.38	-1.9
2,973,557	+		DZA65_RS13850	0.41	-2.1
2,973,557	+		DZA65_RS13850	0.41	+0.7
2,973,557	+		DZA65_RS13850	0.41	-2.5
2,973,557	+		DZA65_RS13850	0.41	-0.0
2,973,557	+		DZA65_RS13850	0.41	-2.3
2,973,557	+		DZA65_RS13850	0.41	-2.9
2,973,557	+		DZA65_RS13850	0.41	+0.1
2,973,558	-		DZA65_RS13850	0.41	-0.6
2,973,558	-		DZA65_RS13850	0.41	-1.3
2,973,558	-		DZA65_RS13850	0.41	-2.6
2,973,587	+		DZA65_RS13850	0.44	+0.1
2,973,587	+		DZA65_RS13850	0.44	-0.6
2,973,587	+		DZA65_RS13850	0.44	-1.3
2,973,587	+		DZA65_RS13850	0.44	+0.4
2,973,587	+		DZA65_RS13850	0.44	-0.8
2,973,587	+		DZA65_RS13850	0.44	-1.6
2,973,587	+		DZA65_RS13850	0.44	-0.7
2,973,587	+		DZA65_RS13850	0.44	-0.1
2,973,587	+		DZA65_RS13850	0.44	-1.9
2,973,587	+		DZA65_RS13850	0.44	-1.3
2,973,588	-		DZA65_RS13850	0.44	-0.3
2,973,588	-		DZA65_RS13850	0.44	-0.9
2,973,588	-		DZA65_RS13850	0.44	-2.1
2,973,588	-		DZA65_RS13850	0.44	+0.1
2,973,588	-		DZA65_RS13850	0.44	-0.3
2,973,588	-		DZA65_RS13850	0.44	+0.4
2,973,588	-		DZA65_RS13850	0.44	-0.3
2,973,588	-		DZA65_RS13850	0.44	-2.2
2,973,588	-		DZA65_RS13850	0.44	-2.6
2,973,588	-		DZA65_RS13850	0.44	+1.2
2,973,588	-		DZA65_RS13850	0.44	-0.3
2,973,588	-		DZA65_RS13850	0.44	-0.9
2,973,592	+		DZA65_RS13850	0.44	-1.7
2,973,592	+		DZA65_RS13850	0.44	-2.8
2,973,593	-		DZA65_RS13850	0.45	-1.6
2,973,593	-		DZA65_RS13850	0.45	-2.1
2,973,593	-		DZA65_RS13850	0.45	-0.9
2,973,593	-		DZA65_RS13850	0.45	-2.3
2,973,634	-		DZA65_RS13850	0.48	-1.6
2,973,804	-		DZA65_RS13850	0.63	-0.9
2,973,804	-		DZA65_RS13850	0.63	-2.5
2,973,804	-		DZA65_RS13850	0.63	+1.7
2,973,922	-		DZA65_RS13850	0.74	-1.1
2,973,937	-		DZA65_RS13850	0.75	-2.5
2,973,937	-		DZA65_RS13850	0.75	-3.1
2,974,022	+		DZA65_RS13850	0.82	-1.6
2,974,137	+				-2.9
2,974,138	-				-0.6
2,974,161	+				-0.9
2,974,161	+				-1.8
2,974,162	-				-0.9
2,974,162	-				-1.9
2,974,261	+				-0.6
2,974,261	+				-0.0
2,974,262	-				+2.3
2,974,262	-				+0.7
2,974,262	-				-1.3
2,974,262	-				+0.3
2,974,262	-				-1.9
2,974,277	+				-1.6
2,974,278	-				-0.6
2,974,285	-				-0.6
2,974,299	-				-0.3
2,974,299	-				+1.0
2,974,313	+				-0.6
2,974,314	-				-1.0
2,974,314	-				-0.6
2,974,314	-				+0.7
2,974,453	+		DZA65_RS13855	0.20	-2.8
2,974,454	+		DZA65_RS13855	0.20	-1.1
2,974,454	+		DZA65_RS13855	0.20	-2.3
2,974,454	+		DZA65_RS13855	0.20	-0.6
2,974,454	+		DZA65_RS13855	0.20	+1.7
2,974,455	-		DZA65_RS13855	0.20	-2.1
2,974,464	+		DZA65_RS13855	0.21	-1.3
2,974,468	+		DZA65_RS13855	0.21	-0.9
2,974,468	+		DZA65_RS13855	0.21	+0.1
2,974,468	+		DZA65_RS13855	0.21	-1.9
2,974,468	+		DZA65_RS13855	0.21	-0.1
2,974,468	+		DZA65_RS13855	0.21	+0.7
2,974,468	+		DZA65_RS13855	0.21	-0.6
2,974,468	+		DZA65_RS13855	0.21	-1.5
2,974,468	+		DZA65_RS13855	0.21	-1.0
2,974,468	+		DZA65_RS13855	0.21	+1.5
2,974,469	-		DZA65_RS13855	0.21	+0.1
2,974,469	-		DZA65_RS13855	0.21	-2.6
2,974,469	-		DZA65_RS13855	0.21	+0.1
2,974,469	-		DZA65_RS13855	0.21	+0.0
2,974,469	-		DZA65_RS13855	0.21	-0.5
2,974,469	-		DZA65_RS13855	0.21	-0.9
2,974,469	-		DZA65_RS13855	0.21	-1.5
2,974,469	-		DZA65_RS13855	0.21	-0.3
2,974,469	-		DZA65_RS13855	0.21	-1.6
2,974,469	-		DZA65_RS13855	0.21	-2.3
2,974,469	-		DZA65_RS13855	0.21	+0.3
2,974,469	-		DZA65_RS13855	0.21	+0.7
2,974,556	+		DZA65_RS13855	0.29	+1.0
2,974,556	+		DZA65_RS13855	0.29	-0.3
2,974,556	+				-0.9
2,974,557	-		DZA65_RS13855	0.29	-1.6
2,974,579	+		DZA65_RS13855	0.31	-0.7
2,974,611	+		DZA65_RS13855	0.33	+0.7
2,974,611	+		DZA65_RS13855	0.33	-1.2
2,974,611	+		DZA65_RS13855	0.33	-0.7
2,974,612	-		DZA65_RS13855	0.33	-0.6
2,974,612	-		DZA65_RS13855	0.33	-1.1
2,974,612	-		DZA65_RS13855	0.33	-1.9
2,974,612	-		DZA65_RS13855	0.33	+1.3
2,974,641	-		DZA65_RS13855	0.36	-0.3
2,974,641	-		DZA65_RS13855	0.36	-1.9
2,974,649	+		DZA65_RS13855	0.36	-1.3
2,974,649	+		DZA65_RS13855	0.36	-1.5
2,974,668	+		DZA65_RS13855	0.38	+0.2
2,974,668	+		DZA65_RS13855	0.38	+0.7
2,974,668	+		DZA65_RS13855	0.38	-0.3
2,974,668	+		DZA65_RS13855	0.38	+0.0
2,974,668	+		DZA65_RS13855	0.38	-1.6
2,974,668	+		DZA65_RS13855	0.38	+1.3
2,974,668	+		DZA65_RS13855	0.38	-1.6
2,974,668	+		DZA65_RS13855	0.38	-0.9
2,974,668	+		DZA65_RS13855	0.38	+0.1
2,974,669	-		DZA65_RS13855	0.38	-1.1
2,974,669	-		DZA65_RS13855	0.38	-2.6
2,974,688	+		DZA65_RS13855	0.40	+0.7
2,974,689	-		DZA65_RS13855	0.40	-0.7
2,974,697	+		DZA65_RS13855	0.41	-0.0
2,974,697	+		DZA65_RS13855	0.41	-1.0
2,974,697	+		DZA65_RS13855	0.41	-0.8
2,974,698	-		DZA65_RS13855	0.41	-2.8
2,974,698	-		DZA65_RS13855	0.41	-0.6
2,974,771	+		DZA65_RS13855	0.47	-1.1
2,974,772	-		DZA65_RS13855	0.47	-3.8
2,974,772	-		DZA65_RS13855	0.47	+0.7
2,974,772	-		DZA65_RS13855	0.47	-0.3
2,974,784	-		DZA65_RS13855	0.48	-0.3
2,974,820	+		DZA65_RS13855	0.51	-2.1
2,974,869	+		DZA65_RS13855	0.55	-0.4
2,974,870	-		DZA65_RS13855	0.55	-0.9
2,974,870	-		DZA65_RS13855	0.55	-0.9
2,974,870	-		DZA65_RS13855	0.55	+1.1
2,974,870	-		DZA65_RS13855	0.55	-0.6
2,974,870	-		DZA65_RS13855	0.55	-0.3
2,974,870	-		DZA65_RS13855	0.55	-0.9
2,974,870	-		DZA65_RS13855	0.55	+0.3
2,974,925	+		DZA65_RS13855	0.60	-0.9
2,974,926	-		DZA65_RS13855	0.60	-1.8
2,974,966	+		DZA65_RS13855	0.63	-2.1
2,974,966	+		DZA65_RS13855	0.63	+0.1
2,974,967	-		DZA65_RS13855	0.63	-1.3
2,974,967	-		DZA65_RS13855	0.63	-0.7
2,975,022	-		DZA65_RS13855	0.68	-1.6
2,975,022	-		DZA65_RS13855	0.68	-1.6
2,975,055	-		DZA65_RS13855	0.71	-0.6
2,975,066	-		DZA65_RS13855	0.72	-1.5
2,975,164	+		DZA65_RS13855	0.80	-1.6
2,975,165	-		DZA65_RS13855	0.80	-1.9
2,975,165	-		DZA65_RS13855	0.80	+0.9
2,975,165	-		DZA65_RS13855	0.80	-1.1
2,975,165	-		DZA65_RS13855	0.80	-0.1
2,975,165	-		DZA65_RS13855	0.80	+0.1
2,975,193	-		DZA65_RS13855	0.82	-0.6
2,975,193	-		DZA65_RS13855	0.82	-1.3
2,975,193	-		DZA65_RS13855	0.82	-0.3
2,975,198	+		DZA65_RS13855	0.83	-2.6
2,975,198	+		DZA65_RS13855	0.83	+0.4
2,975,245	+		DZA65_RS13855	0.87	-1.1
2,975,246	-		DZA65_RS13855	0.87	+2.7
2,975,307	+				-0.6
2,975,307	+				-1.2
2,975,307	+				-2.6
2,975,307	+				-0.6
2,975,307	+				-1.3
2,975,307	+				-0.7
2,975,308	-				-0.9
2,975,308	-				-1.9
2,975,308	-				-2.1
2,975,308	-				+0.7
2,975,308	-				+0.4
2,975,308	-				+3.0
2,975,308	-				-0.1
2,975,308	-				-1.9
2,975,308	-				-1.3
2,975,379	+				-1.1
2,975,388	+				-1.6
2,975,388	+				-2.5
2,975,388	+				-2.2
2,975,388	+				-0.5
2,975,388	+				+0.2
2,975,388	+				-0.7
2,975,388	+				-0.5
2,975,388	+				-0.9
2,975,388	+				+0.0
2,975,388	+				-2.3
2,975,388	+				-1.5
2,975,388	+				-0.6
2,975,388	+				-0.9
2,975,389	-				+0.3
2,975,389	-				+0.3
2,975,389	-				+0.3
2,975,389	-				+0.4
2,975,389	-				-1.3
2,975,389	-				-2.9
2,975,389	-				+0.0
2,975,389	-				+0.2
2,975,389	-				+0.3
2,975,389	-				-1.9
2,975,389	-				+1.0
2,975,389	-				-2.3
2,975,389	-				-1.3
2,975,399	+				-0.3
2,975,399	+				-1.0
2,975,400	-				-2.1
2,975,419	+				-0.9
2,975,420	-				+1.1
2,975,420	-				-0.6
2,975,487	+				-0.0
2,975,487	+				-2.3
2,975,488	-				+0.7
2,975,488	-				-1.5
2,975,518	+				-1.3
2,975,519	-				-2.3
2,975,562	+				+1.7
2,975,644	-				-1.3
2,975,671	-		DZA65_RS13860	0.16	-1.0
2,975,676	+		DZA65_RS13860	0.17	-3.5
2,975,676	+		DZA65_RS13860	0.17	-1.6
2,975,677	-		DZA65_RS13860	0.17	+0.7
2,975,677	-		DZA65_RS13860	0.17	-1.3
2,975,766	+		DZA65_RS13860	0.25	+0.9
2,975,766	+		DZA65_RS13860	0.25	-0.3
2,975,767	-		DZA65_RS13860	0.25	+1.4
2,975,767	-		DZA65_RS13860	0.25	-0.3
2,975,767	-		DZA65_RS13860	0.25	-2.3
2,975,772	+		DZA65_RS13860	0.25	-0.4
2,975,772	+		DZA65_RS13860	0.25	-2.6
2,975,772	+		DZA65_RS13860	0.25	+0.7
2,975,772	+		DZA65_RS13860	0.25	-0.7
2,975,773	-		DZA65_RS13860	0.26	-0.6
2,975,773	-		DZA65_RS13860	0.26	-1.3
2,975,815	+		DZA65_RS13860	0.29	-2.3
2,975,815	+		DZA65_RS13860	0.29	-0.9
2,975,815	+		DZA65_RS13860	0.29	-2.8
2,975,816	-		DZA65_RS13860	0.29	+0.0
2,975,816	-		DZA65_RS13860	0.29	-0.7
2,975,819	-		DZA65_RS13860	0.30	-0.4
2,975,844	+		DZA65_RS13860	0.32	+0.6
2,975,844	+		DZA65_RS13860	0.32	-1.7
2,975,850	+		DZA65_RS13860	0.32	-1.3
2,975,850	+		DZA65_RS13860	0.32	-0.3
2,975,851	-		DZA65_RS13860	0.32	-1.9
2,975,885	-		DZA65_RS13860	0.35	+0.4
2,975,886	+		DZA65_RS13860	0.36	-0.3
2,975,886	+		DZA65_RS13860	0.36	-3.5
2,975,886	+		DZA65_RS13860	0.36	-0.7
2,975,886	+		DZA65_RS13860	0.36	-3.0
2,975,886	+		DZA65_RS13860	0.36	-0.9
2,975,887	-		DZA65_RS13860	0.36	-3.2
2,975,887	-		DZA65_RS13860	0.36	-0.8
2,975,887	-		DZA65_RS13860	0.36	-2.7
2,975,991	+		DZA65_RS13860	0.45	-1.2
2,976,052	+		DZA65_RS13860	0.50	-1.5
2,976,052	+		DZA65_RS13860	0.50	-1.2
2,976,052	+		DZA65_RS13860	0.50	+0.7
2,976,052	+		DZA65_RS13860	0.50	-0.9
2,976,053	-		DZA65_RS13860	0.50	+0.7
2,976,053	-		DZA65_RS13860	0.50	-1.6
2,976,053	-		DZA65_RS13860	0.50	-0.3
2,976,053	-		DZA65_RS13860	0.50	-0.9
2,976,053	-		DZA65_RS13860	0.50	+0.7
2,976,053	-		DZA65_RS13860	0.50	+0.7
2,976,053	-		DZA65_RS13860	0.50	+1.7
2,976,053	-		DZA65_RS13860	0.50	-1.5
2,976,056	+		DZA65_RS13860	0.51	-0.3
2,976,057	-		DZA65_RS13860	0.51	-1.1
2,976,097	-		DZA65_RS13860	0.54	-1.3
2,976,106	+		DZA65_RS13860	0.55	-1.5
2,976,107	-		DZA65_RS13860	0.55	-0.9
2,976,168	+		DZA65_RS13860	0.61	+0.4
2,976,182	-		DZA65_RS13860	0.62	-0.0
2,976,211	+		DZA65_RS13860	0.64	-0.5
2,976,212	-		DZA65_RS13860	0.65	-1.9
2,976,212	-		DZA65_RS13860	0.65	-1.6
2,976,212	-		DZA65_RS13860	0.65	-1.0
2,976,216	+		DZA65_RS13860	0.65	-1.9
2,976,217	-		DZA65_RS13860	0.65	-1.6
2,976,217	-		DZA65_RS13860	0.65	+1.3
2,976,217	-		DZA65_RS13860	0.65	-0.3
2,976,217	-		DZA65_RS13860	0.65	-1.3
2,976,328	+		DZA65_RS13860	0.75	-0.9
2,976,339	-		DZA65_RS13860	0.76	-1.1
2,976,366	+		DZA65_RS13860	0.78	-2.1
2,976,366	+		DZA65_RS13860	0.78	-0.5
2,976,366	+		DZA65_RS13860	0.78	-0.3
2,976,398	+		DZA65_RS13860	0.81	-1.6