Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13290

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,843,328	-		DZA65_RS13280	0.77	+1.1
2,843,328	-		DZA65_RS13280	0.77	-1.3
2,843,347	-		DZA65_RS13280	0.79	+0.7
2,843,347	-		DZA65_RS13280	0.79	-0.3
2,843,426	+		DZA65_RS13280	0.87	+0.6
2,843,426	+		DZA65_RS13280	0.87	+0.0
2,843,426	+		DZA65_RS13280	0.87	-1.6
2,843,427	-		DZA65_RS13280	0.87	-1.3
2,843,427	-		DZA65_RS13280	0.87	-0.3
2,843,427	-		DZA65_RS13280	0.87	-1.6
2,843,427	-		DZA65_RS13280	0.87	-0.3
2,843,430	+		DZA65_RS13280	0.87	+0.1
2,843,430	+		DZA65_RS13280	0.87	-1.9
2,843,430	+		DZA65_RS13280	0.87	+0.9
2,843,431	-		DZA65_RS13280	0.88	-1.3
2,843,433	+		DZA65_RS13280	0.88	-0.5
2,843,434	-		DZA65_RS13280	0.88	-1.6
2,843,475	-				-0.1
2,843,475	-				+3.3
2,843,497	+				+0.7
2,843,497	+				+0.1
2,843,498	-				+0.5
2,843,498	-				-0.1
2,843,517	+				-1.3
2,843,525	-				+3.0
2,843,525	-				+0.1
2,843,538	+				-1.4
2,843,538	+				+0.9
2,843,539	-				-0.5
2,843,544	+				-0.3
2,843,544	+				+0.1
2,843,545	-				+2.1
2,843,545	-				+2.3
2,843,545	-				+1.3
2,843,545	-				+0.0
2,843,545	-				-1.1
2,843,545	-				-1.5
2,843,570	+				-1.9
2,843,570	+				-0.3
2,843,571	-				+0.3
2,843,573	+				-0.0
2,843,613	-				-1.6
2,843,613	-				-1.3
2,843,759	+				+0.7
2,843,760	-				+1.3
2,843,760	-				-0.7
2,843,760	-				+1.7
2,843,765	-				+1.4
2,843,765	-				+1.4
2,843,799	+				-1.8
2,843,799	+				-0.8
2,843,799	+				-0.9
2,843,799	+				+0.3
2,843,799	+				-1.3
2,843,799	+				+0.3
2,843,799	+				-0.9
2,843,800	-				+0.5
2,843,948	-		DZA65_RS13285	0.36	-1.4
2,844,134	+		DZA65_RS13285	0.81	-0.3
2,844,134	+		DZA65_RS13285	0.81	+0.7
2,844,134	+		DZA65_RS13285	0.81	-1.3
2,844,136	+		DZA65_RS13285	0.82	+0.4
2,844,136	+		DZA65_RS13285	0.82	-0.4
2,844,136	+		DZA65_RS13285	0.82	-2.2
2,844,136	+		DZA65_RS13285	0.82	+2.4
2,844,136	+		DZA65_RS13285	0.82	-0.9
2,844,137	-		DZA65_RS13285	0.82	-1.6
2,844,137	-		DZA65_RS13285	0.82	+0.4
2,844,137	-		DZA65_RS13285	0.82	+0.7
2,844,137	-		DZA65_RS13285	0.82	+0.1
2,844,137	-		DZA65_RS13285	0.82	+0.1
2,844,137	-		DZA65_RS13285	0.82	-0.3
2,844,142	+		DZA65_RS13285	0.83	-1.1
2,844,142	+		DZA65_RS13285	0.83	-0.3
2,844,142	+		DZA65_RS13285	0.83	+2.7
2,844,142	+		DZA65_RS13285	0.83	-0.6
2,844,142	+		DZA65_RS13285	0.83	+0.7
2,844,142	+		DZA65_RS13285	0.83	-0.1
2,844,142	+		DZA65_RS13285	0.83	-0.9
2,844,143	-		DZA65_RS13285	0.83	-0.5
2,844,143	-		DZA65_RS13285	0.83	-0.6
2,844,143	-		DZA65_RS13285	0.83	+0.4
2,844,143	-		DZA65_RS13285	0.83	+0.4
2,844,143	-		DZA65_RS13285	0.83	+0.8
2,844,143	-		DZA65_RS13285	0.83	-0.3
2,844,213	-				+0.1
2,844,213	-				-1.5
2,844,213	-				+1.7
2,844,217	-				+0.2
2,844,217	-				-0.1
2,844,217	-				-1.9
2,844,246	+				-0.3
2,844,332	+				-0.3
2,844,332	+				+0.3
2,844,332	+				+0.7
2,844,332	+				-1.1
2,844,332	+				+0.8
2,844,332	+				+1.1
2,844,332	+				+0.7
2,844,332	+				+0.3
2,844,332	+				-0.3
2,844,332	+				+1.3
2,844,332	+				+1.4
2,844,332	+				+1.0
2,844,332	+				+1.3
2,844,333	-				-0.6
2,844,333	-				-1.6
2,844,333	-				+1.7
2,844,333	-				+0.7
2,844,333	-				-1.3
2,844,333	-				-0.5
2,844,333	-				-1.1
2,844,333	-				-0.3
2,844,333	-				-1.3
2,844,333	-				-0.3
2,844,333	-				+0.2
2,844,333	-				+0.7
2,844,333	-				+0.1
2,844,333	-				+0.7
2,844,334	+				-2.9
2,844,335	-				+1.7
2,844,335	-				-0.9
2,844,335	-				+2.0
2,844,381	+				+0.8
2,844,381	+				+0.0
2,844,381	+				-0.9
2,844,421	-				+1.5
2,844,421	-				-0.3
2,844,475	-		DZA65_RS13290	0.13	-0.1
2,844,559	-		DZA65_RS13290	0.20	+0.2
2,844,600	+		DZA65_RS13290	0.23	+0.9
2,844,601	-		DZA65_RS13290	0.23	+0.8
2,844,657	+		DZA65_RS13290	0.28	+0.1
2,844,657	+		DZA65_RS13290	0.28	-2.6
2,844,657	+		DZA65_RS13290	0.28	+0.1
2,844,657	+		DZA65_RS13290	0.28	+0.7
2,844,657	+		DZA65_RS13290	0.28	-0.8
2,844,657	+		DZA65_RS13290	0.28	+1.1
2,844,657	+		DZA65_RS13290	0.28	-0.1
2,844,657	+		DZA65_RS13290	0.28	+0.7
2,844,658	-		DZA65_RS13290	0.28	-2.1
2,844,658	-		DZA65_RS13290	0.28	+1.4
2,844,658	-		DZA65_RS13290	0.28	+0.9
2,844,658	-		DZA65_RS13290	0.28	+0.8
2,844,658	-		DZA65_RS13290	0.28	-2.6
2,844,658	-		DZA65_RS13290	0.28	+0.7
2,844,735	+		DZA65_RS13290	0.34	+0.7
2,844,735	+		DZA65_RS13290	0.34	-3.6
2,844,735	+		DZA65_RS13290	0.34	-0.9
2,844,735	+		DZA65_RS13290	0.34	+1.3
2,844,735	+		DZA65_RS13290	0.34	+0.1
2,844,735	+		DZA65_RS13290	0.34	+0.7
2,844,735	+		DZA65_RS13290	0.34	-0.2
2,844,735	+		DZA65_RS13290	0.34	+0.7
2,844,736	-		DZA65_RS13290	0.34	-1.6
2,844,736	-		DZA65_RS13290	0.34	+0.5
2,844,736	-		DZA65_RS13290	0.34	+0.1
2,844,736	-		DZA65_RS13290	0.34	+0.9
2,844,736	-		DZA65_RS13290	0.34	-1.3
2,844,825	+		DZA65_RS13290	0.41	+0.1
2,844,831	-		DZA65_RS13290	0.42	-0.9
2,844,831	-		DZA65_RS13290	0.42	+1.8
2,844,852	+		DZA65_RS13290	0.44	+0.5
2,844,852	+		DZA65_RS13290	0.44	+1.3
2,844,853	-		DZA65_RS13290	0.44	-0.2
2,844,853	-		DZA65_RS13290	0.44	+1.0
2,844,853	-		DZA65_RS13290	0.44	-0.7
2,844,853	-		DZA65_RS13290	0.44	+0.7
2,844,859	+		DZA65_RS13290	0.44	+0.4
2,844,859	+		DZA65_RS13290	0.44	-0.2
2,844,877	-		DZA65_RS13290	0.46	+3.5
2,845,274	-		DZA65_RS13290	0.78	-0.1
2,845,274	-		DZA65_RS13290	0.78	-1.2
2,845,274	-		DZA65_RS13290	0.78	+0.5
2,845,274	-		DZA65_RS13290	0.78	-0.8
2,845,297	+		DZA65_RS13290	0.79	+4.0
2,845,297	+		DZA65_RS13290	0.79	-0.1
2,845,303	+		DZA65_RS13290	0.80	-0.0
2,845,303	+		DZA65_RS13290	0.80	+0.3
2,845,358	-		DZA65_RS13290	0.84	+1.8
2,845,395	+		DZA65_RS13290	0.87	+0.5
2,845,395	+		DZA65_RS13290	0.87	-1.1
2,845,396	-		DZA65_RS13290	0.87	-0.2
2,845,396	-		DZA65_RS13290	0.87	+0.5
2,845,459	-				-1.6
2,845,523	-				-0.4
2,845,557	+				-1.3
2,845,557	+				+0.7
2,845,557	+				-0.9
2,845,674	+				+1.7
2,845,674	+				-1.9
2,845,674	+				+0.3
2,845,674	+				+0.3
2,845,674	+				-2.0
2,845,674	+				+0.7
2,845,674	+				+0.7
2,845,674	+				-3.1
2,845,675	-				+0.2
2,845,675	-				-1.6
2,845,675	-				-0.2
2,845,675	-				-0.9
2,845,722	-		DZA65_RS13295	0.12	-0.9
2,845,787	+		DZA65_RS13295	0.17	+1.0
2,846,060	-		DZA65_RS13295	0.39	+0.0
2,846,060	-		DZA65_RS13295	0.39	+0.6
2,846,060	-		DZA65_RS13295	0.39	-0.9
2,846,143	+		DZA65_RS13295	0.45	+0.3
2,846,143	+		DZA65_RS13295	0.45	+1.5
2,846,165	+		DZA65_RS13295	0.47	-1.1
2,846,195	+		DZA65_RS13295	0.49	+0.4
2,846,195	+		DZA65_RS13295	0.49	-0.9
2,846,196	-		DZA65_RS13295	0.49	-1.1
2,846,196	-		DZA65_RS13295	0.49	-1.2
2,846,196	-		DZA65_RS13295	0.49	-0.1
2,846,196	-		DZA65_RS13295	0.49	+0.1
2,846,196	-		DZA65_RS13295	0.49	-0.9
2,846,276	+		DZA65_RS13295	0.55	+0.8
2,846,276	+		DZA65_RS13295	0.55	+0.5
2,846,277	-		DZA65_RS13295	0.55	-0.9
2,846,277	-		DZA65_RS13295	0.55	-0.9
2,846,285	-		DZA65_RS13295	0.56	-0.6
2,846,370	+		DZA65_RS13295	0.63	+0.2
2,846,371	-		DZA65_RS13295	0.63	-0.2
2,846,371	-		DZA65_RS13295	0.63	-0.9
2,846,382	-		DZA65_RS13295	0.63	+0.3
2,846,382	-		DZA65_RS13295	0.63	-0.1
2,846,382	-		DZA65_RS13295	0.63	-0.0