Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12735

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,723,498	+				-0.2
2,723,562	-				-0.4
2,723,604	+				+0.0
2,723,605	-				+0.0
2,723,831	+		DZA65_RS12730	0.33	+0.9
2,723,831	+		DZA65_RS12730	0.33	-0.9
2,723,831	+		DZA65_RS12730	0.33	-0.8
2,723,832	-		DZA65_RS12730	0.33	+1.2
2,723,832	-		DZA65_RS12730	0.33	-1.0
2,723,832	-		DZA65_RS12730	0.33	-0.6
2,723,832	-		DZA65_RS12730	0.33	-1.0
2,723,832	-		DZA65_RS12730	0.33	+0.6
2,723,832	-		DZA65_RS12730	0.33	+0.6
2,723,854	-		DZA65_RS12730	0.36	-0.7
2,723,901	+		DZA65_RS12730	0.41	-0.6
2,723,987	-		DZA65_RS12730	0.51	+0.0
2,724,080	+		DZA65_RS12730	0.62	-1.3
2,724,097	+		DZA65_RS12730	0.64	-1.4
2,724,098	-		DZA65_RS12730	0.64	-1.1
2,724,117	+		DZA65_RS12730	0.66	-1.0
2,724,117	+		DZA65_RS12730	0.66	-0.9
2,724,118	-		DZA65_RS12730	0.66	+0.6
2,724,118	-		DZA65_RS12730	0.66	+0.6
2,724,118	-		DZA65_RS12730	0.66	+0.6
2,724,118	-		DZA65_RS12730	0.66	+0.3
2,724,167	+		DZA65_RS12730	0.72	-1.4
2,724,168	-		DZA65_RS12730	0.72	-0.7
2,724,168	-		DZA65_RS12730	0.72	+1.6
2,724,168	-		DZA65_RS12730	0.72	+1.8
2,724,168	-		DZA65_RS12730	0.72	+1.2
2,724,263	+		DZA65_RS12730	0.83	-0.4
2,724,263	+		DZA65_RS12730	0.83	-1.6
2,724,264	-		DZA65_RS12730	0.83	-0.4
2,724,264	-		DZA65_RS12730	0.83	+0.1
2,724,394	-				-1.0
2,724,406	+				-1.7
2,724,406	+				-0.4
2,724,407	-				-2.2
2,724,407	-				-0.4
2,724,473	+				-1.4
2,724,474	-				+2.2
2,724,507	+				-2.0
2,724,543	+		DZA65_RS12735	0.12	-0.1
2,724,543	+		DZA65_RS12735	0.12	+0.6
2,724,544	-		DZA65_RS12735	0.12	+0.1
2,724,544	-		DZA65_RS12735	0.12	-1.6
2,724,544	-		DZA65_RS12735	0.12	-0.9
2,724,547	+		DZA65_RS12735	0.13	+1.2
2,724,547	+		DZA65_RS12735	0.13	-0.7
2,724,573	+		DZA65_RS12735	0.15	-1.0
2,724,573	+		DZA65_RS12735	0.15	-0.4
2,724,574	-		DZA65_RS12735	0.15	+1.6
2,724,574	-		DZA65_RS12735	0.15	-1.0
2,724,613	+		DZA65_RS12735	0.19	-0.3
2,724,614	-		DZA65_RS12735	0.19	-1.9
2,724,628	-		DZA65_RS12735	0.21	+0.7
2,724,719	-		DZA65_RS12735	0.29	-1.0
2,724,719	-		DZA65_RS12735	0.29	-0.7
2,724,744	-		DZA65_RS12735	0.32	+0.4
2,724,896	-		DZA65_RS12735	0.46	-1.0
2,724,896	-		DZA65_RS12735	0.46	-0.6
2,724,901	+		DZA65_RS12735	0.47	-0.1
2,724,901	+		DZA65_RS12735	0.47	-1.0
2,724,901	+		DZA65_RS12735	0.47	-1.4
2,724,902	-		DZA65_RS12735	0.47	-1.0
2,724,902	-		DZA65_RS12735	0.47	-2.6
2,724,902	-		DZA65_RS12735	0.47	-0.4
2,724,902	-		DZA65_RS12735	0.47	-2.2
2,724,902	-		DZA65_RS12735	0.47	-0.6
2,724,902	-		DZA65_RS12735	0.47	-1.2
2,724,905	+		DZA65_RS12735	0.47	-1.0
2,724,905	+		DZA65_RS12735	0.47	-1.4
2,724,905	+		DZA65_RS12735	0.47	+0.2
2,724,905	+		DZA65_RS12735	0.47	+1.2
2,724,905	+		DZA65_RS12735	0.47	-0.3
2,724,906	-		DZA65_RS12735	0.47	+0.2
2,724,906	-		DZA65_RS12735	0.47	+0.1
2,724,906	-		DZA65_RS12735	0.47	+0.0
2,724,906	-		DZA65_RS12735	0.47	-2.0
2,724,906	-		DZA65_RS12735	0.47	+1.1
2,724,906	-		DZA65_RS12735	0.47	+0.6
2,724,906	-		DZA65_RS12735	0.47	-0.7
2,724,949	+		DZA65_RS12735	0.51	+0.5
2,724,950	-		DZA65_RS12735	0.51	-0.9
2,724,950	-		DZA65_RS12735	0.51	-0.3
2,724,950	-		DZA65_RS12735	0.51	-1.4
2,724,950	-		DZA65_RS12735	0.51	+1.6
2,725,028	-		DZA65_RS12735	0.59	+1.6
2,725,198	-		DZA65_RS12735	0.75	-1.9
2,725,213	+		DZA65_RS12735	0.77	-0.6
2,725,263	+		DZA65_RS12735	0.82	-2.0
2,725,263	+		DZA65_RS12735	0.82	-0.8
2,725,264	-		DZA65_RS12735	0.82	+0.1
2,725,264	-		DZA65_RS12735	0.82	-1.0
2,725,264	-		DZA65_RS12735	0.82	+0.1
2,725,273	+		DZA65_RS12735	0.83	-1.4
2,725,273	+		DZA65_RS12735	0.83	-1.0
2,725,273	+		DZA65_RS12735	0.83	+0.6
2,725,273	+				-2.2
2,725,274	-		DZA65_RS12735	0.83	+0.6
2,725,274	-		DZA65_RS12735	0.83	+0.3
2,725,274	-		DZA65_RS12735	0.83	+0.3
2,725,338	+		DZA65_RS12735	0.89	-3.4
2,725,349	+		DZA65_RS12735	0.90	-1.4
2,725,432	-				+0.0
2,725,441	+				+1.1
2,725,441	+				-0.8
2,725,442	-				-0.4
2,725,513	+				+0.0
2,725,513	+				-1.0
2,725,514	-				+0.6
2,725,514	-				-2.0
2,725,514	-				-0.3
2,725,536	+				+1.1
2,725,537	-				+0.9
2,725,538	+				-2.2
2,725,538	+				+0.8
2,725,538	+				-0.4
2,725,539	-				+3.6
2,725,539	-				-0.1
2,725,539	-				-1.7
2,725,679	+		DZA65_RS12740	0.12	-0.4
2,725,680	-		DZA65_RS12740	0.12	+0.6
2,725,713	-		DZA65_RS12740	0.17	-1.3
2,725,713	-		DZA65_RS12740	0.17	+0.3
2,725,713	-		DZA65_RS12740	0.17	-0.7
2,725,713	-		DZA65_RS12740	0.17	-2.2
2,725,713	-		DZA65_RS12740	0.17	-0.4
2,725,764	+		DZA65_RS12740	0.25	+1.2
2,725,764	+		DZA65_RS12740	0.25	-1.0
2,725,765	-		DZA65_RS12740	0.25	+1.9
2,725,765	-		DZA65_RS12740	0.25	-1.4
2,725,765	-		DZA65_RS12740	0.25	+1.2
2,725,765	-		DZA65_RS12740	0.25	+0.2
2,725,765	-		DZA65_RS12740	0.25	-0.2
2,725,765	-		DZA65_RS12740	0.25	-1.0
2,725,765	-		DZA65_RS12740	0.25	-0.7
2,725,771	+		DZA65_RS12740	0.26	-0.4
2,725,771	+		DZA65_RS12740	0.26	-1.0
2,725,771	+		DZA65_RS12740	0.26	+0.6
2,725,772	-		DZA65_RS12740	0.26	-1.4
2,725,772	-		DZA65_RS12740	0.26	+1.2
2,726,028	+		DZA65_RS12740	0.64	-0.5
2,726,073	+		DZA65_RS12740	0.70	+1.4
2,726,074	-		DZA65_RS12740	0.70	+1.2
2,726,165	-		DZA65_RS12740	0.84	-0.4
2,726,238	+				-1.0
2,726,239	-				+1.5
2,726,239	-				+0.0
2,726,239	-				+1.0
2,726,239	-				-0.2
2,726,292	-				-0.4
2,726,366	-				-0.3
2,726,373	-				+0.2
2,726,379	-				+0.2
2,726,388	+				-1.5
2,726,388	+				+0.6
2,726,441	+				-0.2
2,726,441	+				-1.4
2,726,442	-				-1.2
2,726,442	-				+0.0