Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11535

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,463,431	-		DZA65_RS11530	0.51	-1.0
2,463,431	-		DZA65_RS11530	0.51	-0.3
2,463,431	-		DZA65_RS11530	0.51	-0.9
2,463,443	-		DZA65_RS11530	0.53	+0.2
2,463,731	+				-1.6
2,463,731	+				-1.2
2,463,731	+				+0.3
2,463,732	-				+0.5
2,463,732	-				-0.4
2,463,732	-				+1.9
2,463,732	-				-0.1
2,463,732	-				+0.5
2,463,732	-				-0.5
2,463,732	-				-0.5
2,463,735	+				-2.8
2,463,735	+				-1.0
2,463,735	+				-0.9
2,463,736	-				-1.3
2,463,736	-				-0.1
2,463,736	-				+1.2
2,463,736	-				-1.0
2,463,818	+				-0.5
2,463,818	+				-0.2
2,463,818	+				+1.5
2,463,818	+				-0.2
2,463,819	-				-0.3
2,463,819	-				+0.4
2,463,819	-				+2.5
2,463,819	-				+1.3
2,463,889	+				+0.1
2,463,889	+				-0.8
2,463,889	+				+0.3
2,463,889	+				+1.5
2,463,889	+				-1.0
2,463,889	+				-1.0
2,463,889	+				-1.0
2,463,889	+				+1.0
2,463,889	+				+0.9
2,463,890	-				+1.5
2,463,890	-				-0.8
2,463,890	-				+0.1
2,463,890	-				+0.4
2,463,890	-				+0.8
2,463,890	-				+1.0
2,463,890	-				+0.8
2,463,890	-				-0.3
2,463,890	-				-0.6
2,463,899	-				+2.8
2,463,899	-				+0.7
2,463,950	-				-0.8
2,463,953	+				+0.5
2,463,953	+				-1.0
2,463,954	-				-0.5
2,463,955	+				-0.7
2,463,959	-				+0.1
2,463,985	+				+0.5
2,463,985	+				-0.5
2,463,986	-				+0.3
2,463,990	-				+0.5
2,464,010	+				-1.2
2,464,011	-				-1.8
2,464,054	+				-0.0
2,464,055	-				-1.8
2,464,055	-				-1.5
2,464,133	+				+0.7
2,464,312	+				+1.4
2,464,312	+				-1.6
2,464,312	+				-0.8
2,464,312	+				-0.5
2,464,312	+				+0.5
2,464,312	+				+0.5
2,464,312	+				-0.8
2,464,312	+				-1.5
2,464,312	+				+0.1
2,464,312	+				+3.0
2,464,312	+				-0.3
2,464,313	-				-0.4
2,464,313	-				-0.8
2,464,313	-				+0.2
2,464,313	-				+1.3
2,464,313	-				+1.5
2,464,313	-				+0.1
2,464,313	-				+0.5
2,464,313	-				-1.8
2,464,321	+				-1.8
2,464,322	-				-2.3
2,464,322	-				-1.8
2,464,322	-				+1.1
2,464,322	-				-1.5
2,464,322	-				-0.2
2,464,358	+				-0.2
2,464,358	+				-1.8
2,464,359	-				+0.2
2,464,359	-				-2.3
2,464,359	-				+0.1
2,464,359	-				+0.3
2,464,368	+				-0.6
2,464,368	+				+1.8
2,464,368	+				-0.5
2,464,368	+				-1.6
2,464,369	-				+1.4
2,464,369	-				+0.5
2,464,369	-				-1.5
2,464,369	-				+0.9
2,464,381	-				+0.5
2,464,381	-				+0.2
2,464,482	+		DZA65_RS11535	0.11	-0.1
2,464,482	+		DZA65_RS11535	0.11	-0.5
2,464,482	+		DZA65_RS11535	0.11	-1.5
2,464,483	-		DZA65_RS11535	0.11	+1.3
2,464,521	+		DZA65_RS11535	0.14	-0.3
2,464,537	+		DZA65_RS11535	0.16	-0.2
2,464,537	+		DZA65_RS11535	0.16	+0.3
2,464,537	+		DZA65_RS11535	0.16	+0.5
2,464,537	+		DZA65_RS11535	0.16	+0.1
2,464,537	+		DZA65_RS11535	0.16	+0.1
2,464,537	+		DZA65_RS11535	0.16	+0.5
2,464,537	+		DZA65_RS11535	0.16	-1.9
2,464,538	-		DZA65_RS11535	0.16	-2.5
2,464,538	-		DZA65_RS11535	0.16	+0.3
2,464,538	-		DZA65_RS11535	0.16	+0.1
2,464,538	-		DZA65_RS11535	0.16	+1.0
2,464,538	-		DZA65_RS11535	0.16	-2.3
2,464,538	-		DZA65_RS11535	0.16	+0.5
2,464,538	-		DZA65_RS11535	0.16	+1.0
2,464,538	-		DZA65_RS11535	0.16	+0.9
2,464,538	-		DZA65_RS11535	0.16	+0.2
2,464,538	-		DZA65_RS11535	0.16	+2.0
2,464,623	+		DZA65_RS11535	0.23	+1.1
2,464,623	+		DZA65_RS11535	0.23	-1.3
2,464,624	-		DZA65_RS11535	0.23	+1.7
2,464,624	-		DZA65_RS11535	0.23	-1.8
2,464,729	+		DZA65_RS11535	0.33	-1.0
2,464,740	+		DZA65_RS11535	0.34	+1.3
2,464,740	+		DZA65_RS11535	0.34	+1.1
2,464,741	-		DZA65_RS11535	0.34	-1.0
2,464,741	-		DZA65_RS11535	0.34	-1.8
2,464,741	-		DZA65_RS11535	0.34	+0.1
2,464,809	+		DZA65_RS11535	0.40	-1.7
2,464,809	+		DZA65_RS11535	0.40	+0.4
2,464,809	+		DZA65_RS11535	0.40	+1.5
2,464,809	+		DZA65_RS11535	0.40	-1.0
2,464,809	+		DZA65_RS11535	0.40	-0.1
2,464,809	+		DZA65_RS11535	0.40	-2.5
2,464,809	+		DZA65_RS11535	0.40	-0.4
2,464,809	+		DZA65_RS11535	0.40	+1.0
2,464,809	+		DZA65_RS11535	0.40	-2.0
2,464,809	+		DZA65_RS11535	0.40	+0.1
2,464,809	+		DZA65_RS11535	0.40	-0.7
2,464,810	-		DZA65_RS11535	0.40	-1.0
2,464,810	-		DZA65_RS11535	0.40	-1.0
2,464,810	-		DZA65_RS11535	0.40	-0.4
2,464,810	-		DZA65_RS11535	0.40	-0.1
2,464,810	-		DZA65_RS11535	0.40	-1.0
2,464,810	-		DZA65_RS11535	0.40	-2.0
2,464,810	-		DZA65_RS11535	0.40	-0.3
2,464,810	-		DZA65_RS11535	0.40	+1.5
2,464,810	-		DZA65_RS11535	0.40	+0.5
2,464,810	-		DZA65_RS11535	0.40	+0.2
2,464,810	-		DZA65_RS11535	0.40	+1.5
2,464,810	-		DZA65_RS11535	0.40	+0.5
2,464,884	+		DZA65_RS11535	0.47	+0.9
2,464,884	+		DZA65_RS11535	0.47	+0.5
2,464,924	-		DZA65_RS11535	0.50	+0.2
2,464,956	+		DZA65_RS11535	0.53	-0.6
2,464,956	+		DZA65_RS11535	0.53	-2.6
2,464,974	-		DZA65_RS11535	0.55	+1.3
2,464,974	-		DZA65_RS11535	0.55	+2.1
2,464,977	+		DZA65_RS11535	0.55	-1.0
2,465,022	+		DZA65_RS11535	0.59	-2.0
2,465,022	+		DZA65_RS11535	0.59	-1.5
2,465,026	+		DZA65_RS11535	0.59	-0.7
2,465,027	-		DZA65_RS11535	0.59	-0.1
2,465,036	+		DZA65_RS11535	0.60	-1.3
2,465,036	+		DZA65_RS11535	0.60	-0.8
2,465,037	-		DZA65_RS11535	0.60	+0.8
2,465,070	+		DZA65_RS11535	0.63	-1.8
2,465,071	-		DZA65_RS11535	0.63	+1.5
2,465,071	-		DZA65_RS11535	0.63	-0.6
2,465,220	+		DZA65_RS11535	0.76	-0.8
2,465,278	+		DZA65_RS11535	0.82	-0.2
2,465,282	+				-0.5
2,465,283	-		DZA65_RS11535	0.82	-0.5
2,465,308	-		DZA65_RS11535	0.84	-0.3
2,465,315	+		DZA65_RS11535	0.85	+0.7
2,465,315	+		DZA65_RS11535	0.85	-0.0
2,465,316	-		DZA65_RS11535	0.85	-0.5
2,465,325	+		DZA65_RS11535	0.86	+1.7
2,465,325	+		DZA65_RS11535	0.86	-0.5
2,465,326	-		DZA65_RS11535	0.86	-1.0
2,465,326	-		DZA65_RS11535	0.86	-1.3
2,465,409	+				+0.1
2,465,410	-				+0.2
2,465,481	+				-1.0
2,465,481	+				+0.5
2,465,481	+				+0.1
2,465,482	-				+0.8
2,465,482	-				-2.9
2,465,493	+				-1.8
2,465,493	+				-1.1
2,465,493	+				+1.9
2,465,493	+				-2.3
2,465,493	+				+1.1
2,465,493	+				-1.5
2,465,493	+				-1.8
2,465,493	+				-2.3
2,465,493	+				-0.3
2,465,494	-				-0.2
2,465,494	-				+0.5
2,465,494	-				+0.2
2,465,494	-				-1.0
2,465,494	-				-0.8
2,465,526	-				+0.4
2,465,734	+				+0.2
2,465,734	+				-0.5
2,465,735	-				-0.9
2,465,759	+		DZA65_RS11540	0.10	+2.9
2,465,770	+		DZA65_RS11540	0.11	-1.0
2,465,771	-		DZA65_RS11540	0.11	-1.8
2,465,818	+		DZA65_RS11540	0.15	-1.8
2,465,989	-		DZA65_RS11540	0.29	+1.1
2,465,989	-		DZA65_RS11540	0.29	+0.4
2,465,989	-		DZA65_RS11540	0.29	+0.8
2,465,989	-		DZA65_RS11540	0.29	-1.4
2,465,990	+		DZA65_RS11540	0.29	-1.0
2,465,990	+		DZA65_RS11540	0.29	+0.5
2,465,990	+		DZA65_RS11540	0.29	-0.9
2,465,991	-		DZA65_RS11540	0.29	-0.2
2,465,991	-		DZA65_RS11540	0.29	+0.8
2,465,991	-		DZA65_RS11540	0.29	-2.0
2,465,991	-				+0.5
2,466,082	-		DZA65_RS11540	0.36	-0.1
2,466,114	-		DZA65_RS11540	0.39	-0.8
2,466,134	+		DZA65_RS11540	0.40	+0.5
2,466,134	+		DZA65_RS11540	0.40	-0.0
2,466,135	-		DZA65_RS11540	0.40	+0.5
2,466,167	+		DZA65_RS11540	0.43	+2.1
2,466,167	+		DZA65_RS11540	0.43	+1.1
2,466,167	+		DZA65_RS11540	0.43	-1.8
2,466,167	+		DZA65_RS11540	0.43	-3.0
2,466,168	-		DZA65_RS11540	0.43	-1.9
2,466,168	-		DZA65_RS11540	0.43	+1.5
2,466,168	-		DZA65_RS11540	0.43	+0.8
2,466,193	+		DZA65_RS11540	0.45	+0.0
2,466,193	+		DZA65_RS11540	0.45	-1.8
2,466,193	+		DZA65_RS11540	0.45	+0.1
2,466,193	+		DZA65_RS11540	0.45	-1.3
2,466,194	-		DZA65_RS11540	0.45	-0.6
2,466,194	-		DZA65_RS11540	0.45	-1.3
2,466,194	-		DZA65_RS11540	0.45	-0.2
2,466,194	-		DZA65_RS11540	0.45	+0.4
2,466,232	+		DZA65_RS11540	0.48	-1.5
2,466,390	-		DZA65_RS11540	0.61	-2.3
2,466,390	-		DZA65_RS11540	0.61	+0.5
2,466,434	+		DZA65_RS11540	0.64	+0.7
2,466,434	+		DZA65_RS11540	0.64	+0.5
2,466,434	+		DZA65_RS11540	0.64	-1.0
2,466,434	+		DZA65_RS11540	0.64	+0.2
2,466,435	-		DZA65_RS11540	0.64	-1.0
2,466,435	-		DZA65_RS11540	0.64	+0.5
2,466,435	-		DZA65_RS11540	0.64	-1.3
2,466,435	-		DZA65_RS11540	0.64	-1.8
2,466,441	-		DZA65_RS11540	0.65	+0.2