Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11265

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,389,478	+		DZA65_RS11260	0.29	-2.5
2,389,478	+		DZA65_RS11260	0.29	-2.6
2,389,478	+		DZA65_RS11260	0.29	-1.0
2,389,479	-		DZA65_RS11260	0.29	-1.6
2,389,479	-		DZA65_RS11260	0.29	-2.5
2,389,876	-		DZA65_RS11260	0.59	-2.9
2,390,055	+				-2.3
2,390,142	+				+0.9
2,390,142	+		DZA65_RS11260	0.80	-1.8
2,390,142	+		DZA65_RS11260	0.80	-1.0
2,390,142	+		DZA65_RS11260	0.80	-1.9
2,390,143	-		DZA65_RS11260	0.80	-3.2
2,390,143	-		DZA65_RS11260	0.80	-2.8
2,390,154	+		DZA65_RS11260	0.80	-1.3
2,390,155	-		DZA65_RS11260	0.81	-3.5
2,390,155	-		DZA65_RS11260	0.81	-2.6
2,390,183	-				-0.5
2,390,186	+		DZA65_RS11260	0.83	-0.6
2,390,187	-		DZA65_RS11260	0.83	-3.9
2,390,350	+				-2.0
2,390,350	+				-1.2
2,390,350	+				-1.0
2,390,350	+				-2.0
2,390,351	-				-2.5
2,390,351	-				-0.5
2,390,351	-				-3.2
2,390,351	-				-0.5
2,390,380	-				-1.8
2,390,392	+				+0.5
2,390,393	-				+0.5
2,390,393	-				-1.5
2,390,393	-				-0.8
2,390,393	-				-1.7
2,390,408	+				-2.6
2,390,408	+				-3.6
2,390,408	+				-2.6
2,390,409	-				-2.9
2,390,409	-				-4.0
2,390,434	+				-2.9
2,390,434	+				-1.8
2,390,434	+				-4.4
2,390,434	+				+0.5
2,390,434	+				-1.5
2,390,434	+				-2.5
2,390,435	-				-0.5
2,390,448	+				-2.3
2,390,448	+				-2.3
2,390,448	+				-2.3
2,390,449	-				-1.3
2,390,449	-				-0.5
2,390,572	+				-2.3
2,390,572	+				-0.6
2,390,573	-				-0.5
2,390,593	+				-1.9
2,390,594	-				-0.5
2,390,594	-				-1.8
2,390,650	+				-1.0
2,390,687	+				+1.0
2,390,687	+				-1.8
2,390,687	+				-2.5
2,390,687	+				-2.6
2,390,687	+				-2.9
2,390,688	-				-1.5
2,390,688	-				-3.9
2,390,688	-				-2.3
2,390,688	-				-3.9
2,390,727	+		DZA65_RS11265	0.10	-4.1
2,390,728	-		DZA65_RS11265	0.11	+0.5
2,390,733	+		DZA65_RS11265	0.11	+0.5
2,390,734	-		DZA65_RS11265	0.11	-3.3
2,390,734	-		DZA65_RS11265	0.11	-1.0
2,390,748	+		DZA65_RS11265	0.11	-4.2
2,390,762	+		DZA65_RS11265	0.12	-3.0
2,390,762	+		DZA65_RS11265	0.12	-2.9
2,390,762	+		DZA65_RS11265	0.12	-2.4
2,390,762	+		DZA65_RS11265	0.12	-1.8
2,390,763	-		DZA65_RS11265	0.12	-3.0
2,390,907	+		DZA65_RS11265	0.17	-3.5
2,390,907	+		DZA65_RS11265	0.17	-2.7
2,390,907	+		DZA65_RS11265	0.17	-3.4
2,390,917	+		DZA65_RS11265	0.17	-2.0
2,390,917	+		DZA65_RS11265	0.17	-3.6
2,390,918	-		DZA65_RS11265	0.17	-1.9
2,390,918	-		DZA65_RS11265	0.17	-4.9
2,391,056	-		DZA65_RS11265	0.21	-1.8
2,391,067	+		DZA65_RS11265	0.22	-2.0
2,391,085	-		DZA65_RS11265	0.22	-3.0
2,391,088	-		DZA65_RS11265	0.23	-1.7
2,391,247	+		DZA65_RS11265	0.28	-1.3
2,391,247	+		DZA65_RS11265	0.28	-1.8
2,391,248	-		DZA65_RS11265	0.28	-3.5
2,391,248	-		DZA65_RS11265	0.28	-1.7
2,391,248	-		DZA65_RS11265	0.28	-2.0
2,391,248	-		DZA65_RS11265	0.28	-2.3
2,391,248	-		DZA65_RS11265	0.28	-2.9
2,391,248	-		DZA65_RS11265	0.28	-1.8
2,391,248	-		DZA65_RS11265	0.28	+0.5
2,391,248	-		DZA65_RS11265	0.28	-2.2
2,391,255	-		DZA65_RS11265	0.28	+1.1
2,391,283	+		DZA65_RS11265	0.29	-1.0
2,391,283	+		DZA65_RS11265	0.29	-1.0
2,391,283	+		DZA65_RS11265	0.29	-1.5
2,391,283	+		DZA65_RS11265	0.29	-3.4
2,391,283	+		DZA65_RS11265	0.29	-2.5
2,391,283	+		DZA65_RS11265	0.29	-3.0
2,391,284	-		DZA65_RS11265	0.29	-3.6
2,391,284	-		DZA65_RS11265	0.29	-0.5
2,391,284	-		DZA65_RS11265	0.29	-3.6
2,391,284	-		DZA65_RS11265	0.29	-2.3
2,391,284	-		DZA65_RS11265	0.29	-4.2
2,391,284	-		DZA65_RS11265	0.29	-1.5
2,391,284	-		DZA65_RS11265	0.29	-1.0
2,391,287	+		DZA65_RS11265	0.29	-1.6
2,391,287	+		DZA65_RS11265	0.29	-2.6
2,391,287	+		DZA65_RS11265	0.29	-3.8
2,391,287	+		DZA65_RS11265	0.29	-1.8
2,391,288	-		DZA65_RS11265	0.29	-1.7
2,391,288	-		DZA65_RS11265	0.29	-3.3
2,391,288	-		DZA65_RS11265	0.29	-5.5
2,391,288	-		DZA65_RS11265	0.29	-3.7
2,391,288	-		DZA65_RS11265	0.29	-1.5
2,391,288	-		DZA65_RS11265	0.29	-3.0
2,391,289	+		DZA65_RS11265	0.29	-1.0
2,391,289	+		DZA65_RS11265	0.29	-2.3
2,391,289	+		DZA65_RS11265	0.29	-2.2
2,391,289	+		DZA65_RS11265	0.29	-0.4
2,391,289	+		DZA65_RS11265	0.29	-4.0
2,391,290	-		DZA65_RS11265	0.29	-1.8
2,391,290	-		DZA65_RS11265	0.29	-1.5
2,391,290	-		DZA65_RS11265	0.29	-3.0
2,391,290	-		DZA65_RS11265	0.29	-3.7
2,391,290	-		DZA65_RS11265	0.29	-2.6
2,391,462	+		DZA65_RS11265	0.35	-2.4
2,391,502	+		DZA65_RS11265	0.36	+0.8
2,391,502	+		DZA65_RS11265	0.36	+0.3
2,391,502	+		DZA65_RS11265	0.36	-1.0
2,391,502	+		DZA65_RS11265	0.36	-3.6
2,391,502	+		DZA65_RS11265	0.36	-1.5
2,391,502	+		DZA65_RS11265	0.36	-1.8
2,391,503	-		DZA65_RS11265	0.36	+2.1
2,391,503	-		DZA65_RS11265	0.36	-1.4
2,391,503	-		DZA65_RS11265	0.36	-2.9
2,391,503	-		DZA65_RS11265	0.36	-4.8
2,391,503	-		DZA65_RS11265	0.36	-1.5
2,391,503	-		DZA65_RS11265	0.36	-0.5
2,391,503	-		DZA65_RS11265	0.36	-1.0
2,391,655	+		DZA65_RS11265	0.42	-1.8
2,391,655	+		DZA65_RS11265	0.42	-2.0
2,391,655	+		DZA65_RS11265	0.42	-2.3
2,391,656	-		DZA65_RS11265	0.42	-3.8
2,391,783	+		DZA65_RS11265	0.46	-3.0
2,391,783	+		DZA65_RS11265	0.46	-1.5
2,391,784	-		DZA65_RS11265	0.46	-1.9
2,391,784	-		DZA65_RS11265	0.46	-0.5
2,391,784	-		DZA65_RS11265	0.46	-1.5
2,391,784	-		DZA65_RS11265	0.46	-1.8
2,391,804	+		DZA65_RS11265	0.47	-2.2
2,391,810	+		DZA65_RS11265	0.47	-1.5
2,391,811	-		DZA65_RS11265	0.47	-2.3
2,391,991	+		DZA65_RS11265	0.53	-2.6
2,391,991	+		DZA65_RS11265	0.53	-1.0
2,391,991	+		DZA65_RS11265	0.53	-2.0
2,391,991	+		DZA65_RS11265	0.53	-1.0
2,391,991	+		DZA65_RS11265	0.53	-1.0
2,391,991	+		DZA65_RS11265	0.53	-3.2
2,391,991	+		DZA65_RS11265	0.53	-3.5
2,391,992	-		DZA65_RS11265	0.53	+0.3
2,391,997	+		DZA65_RS11265	0.53	-1.3
2,391,998	-		DZA65_RS11265	0.53	-1.0
2,391,998	-		DZA65_RS11265	0.53	-0.5
2,392,160	-		DZA65_RS11265	0.58	-0.5
2,392,160	-				-2.3
2,392,160	-		DZA65_RS11265	0.58	-1.8
2,392,227	+		DZA65_RS11265	0.61	-1.0
2,392,227	+		DZA65_RS11265	0.61	-1.5
2,392,228	-		DZA65_RS11265	0.61	-2.3
2,392,228	-		DZA65_RS11265	0.61	-3.6
2,392,228	-		DZA65_RS11265	0.61	-3.3
2,392,270	+		DZA65_RS11265	0.62	-2.0
2,392,270	+		DZA65_RS11265	0.62	-1.8
2,392,270	+		DZA65_RS11265	0.62	-1.0
2,392,270	+		DZA65_RS11265	0.62	-3.0
2,392,270	+		DZA65_RS11265	0.62	-0.5
2,392,270	+		DZA65_RS11265	0.62	-0.9
2,392,270	+		DZA65_RS11265	0.62	-2.9
2,392,270	+		DZA65_RS11265	0.62	-2.0
2,392,270	+		DZA65_RS11265	0.62	-3.5
2,392,270	+		DZA65_RS11265	0.62	-2.6
2,392,270	+		DZA65_RS11265	0.62	-1.5
2,392,271	-		DZA65_RS11265	0.62	-1.6
2,392,271	-		DZA65_RS11265	0.62	-1.0
2,392,271	-		DZA65_RS11265	0.62	-2.9
2,392,271	-		DZA65_RS11265	0.62	-2.8
2,392,271	-		DZA65_RS11265	0.62	-1.8
2,392,271	-		DZA65_RS11265	0.62	-1.3
2,392,271	-		DZA65_RS11265	0.62	-2.5
2,392,271	-		DZA65_RS11265	0.62	-0.6
2,392,271	-		DZA65_RS11265	0.62	-0.6
2,392,271	-		DZA65_RS11265	0.62	-1.5
2,392,271	-		DZA65_RS11265	0.62	-0.8
2,392,271	-		DZA65_RS11265	0.62	-1.5
2,392,271	-		DZA65_RS11265	0.62	-2.3
2,392,271	-		DZA65_RS11265	0.62	-3.2
2,392,271	-		DZA65_RS11265	0.62	+0.5
2,392,271	-		DZA65_RS11265	0.62	-2.8
2,392,271	-		DZA65_RS11265	0.62	-0.5
2,392,271	-		DZA65_RS11265	0.62	-1.8
2,392,416	+		DZA65_RS11265	0.67	-0.5
2,392,534	+		DZA65_RS11265	0.71	-0.6
2,392,534	+		DZA65_RS11265	0.71	-1.2
2,392,534	+		DZA65_RS11265	0.71	+0.2
2,392,535	-		DZA65_RS11265	0.71	-4.1
2,392,535	-		DZA65_RS11265	0.71	-1.8
2,392,700	-		DZA65_RS11265	0.76	-3.0
2,392,700	-		DZA65_RS11265	0.76	-2.6
2,392,814	-		DZA65_RS11265	0.80	-2.8
2,392,895	+		DZA65_RS11265	0.83	-2.6
2,392,895	+		DZA65_RS11265	0.83	-3.3
2,392,895	+		DZA65_RS11265	0.83	-3.0
2,392,895	+		DZA65_RS11265	0.83	-1.0
2,392,895	+		DZA65_RS11265	0.83	-3.6
2,392,896	-		DZA65_RS11265	0.83	-2.5
2,392,896	-		DZA65_RS11265	0.83	-1.0
2,392,896	-		DZA65_RS11265	0.83	-0.8
2,392,896	-		DZA65_RS11265	0.83	-4.6
2,392,896	-		DZA65_RS11265	0.83	+0.5
2,392,934	-		DZA65_RS11265	0.84	-2.0
2,392,960	+		DZA65_RS11265	0.85	-2.5
2,392,961	-		DZA65_RS11265	0.85	-4.1
2,392,961	-		DZA65_RS11265	0.85	-2.9
2,392,961	-		DZA65_RS11265	0.85	-2.0
2,392,975	+		DZA65_RS11265	0.86	-0.7
2,393,008	-		DZA65_RS11265	0.87	-2.0
2,393,023	+		DZA65_RS11265	0.87	-0.5
2,393,023	+		DZA65_RS11265	0.87	-0.2
2,393,024	-		DZA65_RS11265	0.87	-2.0
2,393,024	-		DZA65_RS11265	0.87	-3.4
2,393,024	-		DZA65_RS11265	0.87	-3.0
2,393,024	-		DZA65_RS11265	0.87	-1.6
2,393,024	-		DZA65_RS11265	0.87	-0.5
2,393,026	+		DZA65_RS11265	0.87	-2.0
2,393,026	+		DZA65_RS11265	0.87	-3.6
2,393,026	+		DZA65_RS11265	0.87	-2.6
2,393,026	+		DZA65_RS11265	0.87	-0.5
2,393,026	+		DZA65_RS11265	0.87	+0.5
2,393,026	+		DZA65_RS11265	0.87	+0.5
2,393,026	+		DZA65_RS11265	0.87	-1.9
2,393,026	+		DZA65_RS11265	0.87	-1.0
2,393,026	+				-3.2
2,393,027	-				-2.0
2,393,027	-		DZA65_RS11265	0.87	-0.8
2,393,027	-		DZA65_RS11265	0.87	-1.8
2,393,027	-		DZA65_RS11265	0.87	-2.6
2,393,027	-		DZA65_RS11265	0.87	-1.3
2,393,027	-		DZA65_RS11265	0.87	-3.2
2,393,027	-		DZA65_RS11265	0.87	-2.3
2,393,027	-		DZA65_RS11265	0.87	-3.2
2,393,027	-		DZA65_RS11265	0.87	-2.8
2,393,028	+		DZA65_RS11265	0.87	-2.6
2,393,028	+		DZA65_RS11265	0.87	-0.5
2,393,028	+		DZA65_RS11265	0.87	-3.6
2,393,029	-		DZA65_RS11265	0.87	-1.8
2,393,153	-				-1.0
2,393,153	-				-1.9
2,393,207	+				-1.8
2,393,270	+				-4.8
2,393,271	-				-2.6
2,393,271	-				-3.7
2,393,271	-				-3.2
2,393,318	+				-2.6
2,393,334	+				-2.8
2,393,334	+				-2.8
2,393,334	+				-1.5
2,393,335	-				-3.4
2,393,335	-				-3.9
2,393,335	-				-1.5
2,393,335	-				-1.0
2,393,335	-				-1.8
2,393,368	+				-1.0
2,393,368	+				-1.5
2,393,368	+				-2.9
2,393,369	-				-2.9
2,393,369	-				-2.5
2,393,369	-				-3.6
2,393,439	-				-2.3
2,393,470	+				-1.5
2,393,470	+				-1.5
2,393,470	+				-3.3
2,393,470	+				-0.8
2,393,470	+				-2.3
2,393,470	+				-2.4
2,393,471	-				-2.0
2,393,471	-				-2.6
2,393,471	-				-2.0
2,393,471	-				-0.5
2,393,525	+				-2.0
2,393,526	-				-3.0
2,393,649	+				-2.5
2,393,649	+				-2.9
2,393,649	+				-2.3
2,393,722	-		DZA65_RS11270	0.13	-3.6
2,393,732	+		DZA65_RS11270	0.13	-0.5
2,393,732	+		DZA65_RS11270	0.13	-0.5
2,393,733	-		DZA65_RS11270	0.13	-3.3
2,393,849	+		DZA65_RS11270	0.18	-4.4
2,393,850	-		DZA65_RS11270	0.18	-1.8
2,393,853	-		DZA65_RS11270	0.18	-2.0
2,393,853	-		DZA65_RS11270	0.18	-1.5
2,393,853	-		DZA65_RS11270	0.18	-1.8
2,393,853	-		DZA65_RS11270	0.18	-2.5
2,393,853	-		DZA65_RS11270	0.18	-2.8
2,393,853	-		DZA65_RS11270	0.18	-1.8
2,393,853	-		DZA65_RS11270	0.18	-2.3
2,393,853	-				-2.0
2,393,853	-		DZA65_RS11270	0.18	-2.6
2,394,007	-		DZA65_RS11270	0.24	-3.4
2,394,144	+		DZA65_RS11270	0.30	-1.0
2,394,144	+		DZA65_RS11270	0.30	-4.3
2,394,145	-		DZA65_RS11270	0.30	-1.5
2,394,145	-		DZA65_RS11270	0.30	-2.6
2,394,156	+		DZA65_RS11270	0.30	-2.6
2,394,257	+		DZA65_RS11270	0.34	-0.5
2,394,257	+		DZA65_RS11270	0.34	-2.6
2,394,258	-		DZA65_RS11270	0.34	-2.3
2,394,291	-		DZA65_RS11270	0.35	-2.6
2,394,291	-		DZA65_RS11270	0.35	-1.0
2,394,291	-		DZA65_RS11270	0.35	-3.0
2,394,291	-		DZA65_RS11270	0.35	-2.0
2,394,291	-		DZA65_RS11270	0.35	-1.7
2,394,311	-		DZA65_RS11270	0.36	-0.7
2,394,311	-		DZA65_RS11270	0.36	-3.6
2,394,311	-		DZA65_RS11270	0.36	-2.3
2,394,311	-		DZA65_RS11270	0.36	-1.8