Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11110

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,352,381	+		DZA65_RS11100	0.75	+0.0
2,352,382	-		DZA65_RS11100	0.75	+0.5
2,352,382	-		DZA65_RS11100	0.75	+0.5
2,352,471	+		DZA65_RS11100	0.84	+0.8
2,352,472	-		DZA65_RS11100	0.84	-0.5
2,352,584	-				-1.8
2,352,618	-				-0.5
2,352,629	-				+1.9
2,352,680	+				-0.5
2,352,680	+				-2.8
2,352,681	-				-0.8
2,352,681	-				-0.0
2,352,681	-				-1.0
2,352,681	-				-0.0
2,352,681	-				+0.8
2,352,698	+				+1.2
2,352,724	+				-0.5
2,352,724	+				-0.7
2,352,725	-				+1.0
2,352,725	-				+0.5
2,352,726	+				-1.0
2,352,727	-				+0.9
2,352,727	-				+0.2
2,352,727	-				+0.1
2,352,727	-				+0.3
2,352,733	+				+0.5
2,352,772	+				-3.0
2,352,773	-				-0.5
2,352,783	+				-0.5
2,352,783	+				-1.8
2,352,790	+				-0.5
2,352,791	-				+0.2
2,352,791	-				+0.2
2,352,792	+				-1.9
2,352,792	+				+1.0
2,352,792	+				-0.4
2,352,792	+				-1.2
2,352,792	+				-0.0
2,352,792	+				+0.3
2,352,792	+				-1.0
2,352,793	-				+0.0
2,352,793	-				+1.5
2,352,801	+				-0.5
2,352,801	+				-0.8
2,352,802	-				-3.0
2,352,808	+				-0.0
2,352,811	-				-0.2
2,352,840	+				-0.0
2,352,865	+		DZA65_RS11105	0.13	+1.1
2,352,866	-		DZA65_RS11105	0.13	-0.2
2,352,891	+		DZA65_RS11105	0.19	-1.8
2,352,891	+		DZA65_RS11105	0.19	-0.0
2,352,936	+		DZA65_RS11105	0.29	+0.7
2,352,937	-		DZA65_RS11105	0.29	-1.2
2,352,945	-		DZA65_RS11105	0.31	+0.8
2,352,980	-		DZA65_RS11105	0.38	+1.5
2,353,027	-		DZA65_RS11105	0.48	-1.2
2,353,119	+		DZA65_RS11105	0.68	-2.0
2,353,120	-		DZA65_RS11105	0.69	+1.4
2,353,120	-		DZA65_RS11105	0.69	-0.0
2,353,144	+		DZA65_RS11105	0.74	+1.4
2,353,144	+		DZA65_RS11105	0.74	+0.1
2,353,145	-		DZA65_RS11105	0.74	-0.0
2,353,145	-		DZA65_RS11105	0.74	+0.5
2,353,145	-		DZA65_RS11105	0.74	-0.0
2,353,146	+		DZA65_RS11105	0.74	-0.2
2,353,146	+		DZA65_RS11105	0.74	-0.5
2,353,146	+		DZA65_RS11105	0.74	+1.0
2,353,147	-		DZA65_RS11105	0.75	+0.5
2,353,152	+		DZA65_RS11105	0.76	+1.3
2,353,152	+		DZA65_RS11105	0.76	-1.0
2,353,152	+		DZA65_RS11105	0.76	+0.5
2,353,152	+		DZA65_RS11105	0.76	-0.3
2,353,152	+		DZA65_RS11105	0.76	-0.2
2,353,153	-		DZA65_RS11105	0.76	+3.5
2,353,153	-		DZA65_RS11105	0.76	-0.6
2,353,153	-		DZA65_RS11105	0.76	+0.7
2,353,187	-		DZA65_RS11105	0.83	-3.0
2,353,187	-		DZA65_RS11105	0.83	-1.3
2,353,187	-		DZA65_RS11105	0.83	-3.0
2,353,188	+		DZA65_RS11105	0.83	+0.0
2,353,188	+		DZA65_RS11105	0.83	+0.1
2,353,188	+		DZA65_RS11105	0.83	+0.1
2,353,188	+		DZA65_RS11105	0.83	+0.5
2,353,188	+		DZA65_RS11105	0.83	+1.7
2,353,188	+		DZA65_RS11105	0.83	-0.0
2,353,188	+		DZA65_RS11105	0.83	+1.1
2,353,188	+		DZA65_RS11105	0.83	+0.8
2,353,189	-		DZA65_RS11105	0.84	+1.2
2,353,189	-		DZA65_RS11105	0.84	-0.9
2,353,189	-		DZA65_RS11105	0.84	+0.5
2,353,192	+		DZA65_RS11105	0.84	-1.0
2,353,192	+		DZA65_RS11105	0.84	+0.5
2,353,193	-		DZA65_RS11105	0.85	+1.0
2,353,198	+		DZA65_RS11105	0.86	+1.5
2,353,198	+		DZA65_RS11105	0.86	-0.9
2,353,198	+		DZA65_RS11105	0.86	+1.8
2,353,199	-		DZA65_RS11105	0.86	-1.8
2,353,199	-		DZA65_RS11105	0.86	+0.7
2,353,199	-		DZA65_RS11105	0.86	+2.5
2,353,286	+				-1.3
2,353,286	+				+1.0
2,353,286	+				-1.0
2,353,287	-				+0.7
2,353,287	-				-0.6
2,353,287	-				-1.0
2,353,289	+				-1.1
2,353,317	+				-0.9
2,353,499	+		DZA65_RS11110	0.13	+0.5
2,353,500	-		DZA65_RS11110	0.13	+0.8
2,353,500	-		DZA65_RS11110	0.13	+0.5
2,353,507	-		DZA65_RS11110	0.14	+0.5
2,353,507	-		DZA65_RS11110	0.14	+1.7
2,353,507	-		DZA65_RS11110	0.14	+1.1
2,353,613	+		DZA65_RS11110	0.24	+0.5
2,353,614	-		DZA65_RS11110	0.24	-1.0
2,353,614	-		DZA65_RS11110	0.24	+0.5
2,353,677	+		DZA65_RS11110	0.30	-0.6
2,353,677	+		DZA65_RS11110	0.30	+0.5
2,353,677	+		DZA65_RS11110	0.30	+0.1
2,353,678	-		DZA65_RS11110	0.31	-1.5
2,353,678	-		DZA65_RS11110	0.31	+1.1
2,353,838	-		DZA65_RS11110	0.46	+0.1
2,353,910	+		DZA65_RS11110	0.53	-0.1
2,353,964	-		DZA65_RS11110	0.59	+0.2
2,353,993	+		DZA65_RS11110	0.62	+0.4
2,353,994	-				+0.1
2,354,076	+		DZA65_RS11110	0.70	+0.5
2,354,076	+		DZA65_RS11110	0.70	-1.8
2,354,076	+		DZA65_RS11110	0.70	-0.5
2,354,076	+		DZA65_RS11110	0.70	-1.7
2,354,076	+		DZA65_RS11110	0.70	+2.9
2,354,076	+		DZA65_RS11110	0.70	-0.3
2,354,076	+		DZA65_RS11110	0.70	+0.5
2,354,076	+		DZA65_RS11110	0.70	+0.5
2,354,076	+		DZA65_RS11110	0.70	+0.5
2,354,076	+		DZA65_RS11110	0.70	+0.9
2,354,076	+		DZA65_RS11110	0.70	-1.5
2,354,077	-		DZA65_RS11110	0.70	+1.8
2,354,077	-		DZA65_RS11110	0.70	-0.5
2,354,077	-		DZA65_RS11110	0.70	-0.5
2,354,077	-		DZA65_RS11110	0.70	+1.3
2,354,077	-		DZA65_RS11110	0.70	+0.9
2,354,077	-		DZA65_RS11110	0.70	+2.1
2,354,077	-		DZA65_RS11110	0.70	+0.5
2,354,077	-		DZA65_RS11110	0.70	+0.5
2,354,077	-		DZA65_RS11110	0.70	-1.0
2,354,077	-		DZA65_RS11110	0.70	+2.1
2,354,077	-		DZA65_RS11110	0.70	-1.8
2,354,120	+		DZA65_RS11110	0.74	+1.0
2,354,120	+		DZA65_RS11110	0.74	+0.5
2,354,120	+		DZA65_RS11110	0.74	+0.5
2,354,121	-		DZA65_RS11110	0.74	-1.3
2,354,121	-		DZA65_RS11110	0.74	+0.8
2,354,121	-		DZA65_RS11110	0.74	+0.1
2,354,143	-		DZA65_RS11110	0.76	+1.5
2,354,256	-		DZA65_RS11110	0.87	-0.2
2,354,256	-		DZA65_RS11110	0.87	+0.1
2,354,287	+				-0.6
2,354,287	+				-1.0
2,354,290	+				+0.5
2,354,290	+				+2.5
2,354,291	-				-0.3
2,354,291	-				-0.0
2,354,315	-				-1.8
2,354,332	+				-2.8
2,354,332	+				+1.5
2,354,377	+				+0.5
2,354,378	-				-1.8
2,354,497	+				-2.3
2,354,498	-				+0.5
2,354,553	-				-0.5
2,354,555	-				+0.3
2,354,673	-				+1.3
2,354,788	+		DZA65_RS11115	0.10	-1.1
2,354,788	+		DZA65_RS11115	0.10	+0.4
2,354,789	-		DZA65_RS11115	0.10	-0.2
2,354,789	-		DZA65_RS11115	0.10	-1.5
2,354,789	-		DZA65_RS11115	0.10	+0.3
2,354,789	-		DZA65_RS11115	0.10	+0.4
2,354,789	-		DZA65_RS11115	0.10	+0.5
2,354,954	+		DZA65_RS11115	0.21	-0.2
2,354,955	-		DZA65_RS11115	0.21	+0.5
2,354,955	-		DZA65_RS11115	0.21	+0.4
2,354,955	-		DZA65_RS11115	0.21	+0.1
2,355,005	+		DZA65_RS11115	0.24	+1.5
2,355,005	+		DZA65_RS11115	0.24	+0.1
2,355,005	+		DZA65_RS11115	0.24	+0.5
2,355,006	-		DZA65_RS11115	0.24	-0.5
2,355,006	-		DZA65_RS11115	0.24	+0.5
2,355,029	+		DZA65_RS11115	0.25	-0.0