Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10595

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,246,885	+		DZA65_RS10590	0.42	+1.6
2,247,117	+		DZA65_RS10590	0.61	-1.4
2,247,180	-		DZA65_RS10590	0.67	-0.1
2,247,306	+		DZA65_RS10590	0.77	-0.4
2,247,306	+		DZA65_RS10590	0.77	+0.1
2,247,307	-		DZA65_RS10590	0.77	-2.1
2,247,307	-		DZA65_RS10590	0.77	-1.8
2,247,341	+				+1.9
2,247,341	+		DZA65_RS10590	0.80	-0.4
2,247,341	+		DZA65_RS10590	0.80	+0.7
2,247,341	+		DZA65_RS10590	0.80	-0.0
2,247,342	-		DZA65_RS10590	0.80	+0.6
2,247,342	-		DZA65_RS10590	0.80	+1.6
2,247,342	-		DZA65_RS10590	0.80	-1.6
2,247,393	+		DZA65_RS10590	0.85	-0.1
2,247,393	+		DZA65_RS10590	0.85	-0.1
2,247,393	+		DZA65_RS10590	0.85	+0.6
2,247,393	+		DZA65_RS10590	0.85	+1.2
2,247,443	+		DZA65_RS10590	0.89	-0.8
2,247,528	+				-1.3
2,247,528	+				+0.6
2,247,529	-				-0.4
2,247,569	-				-2.4
2,247,569	-				-1.2
2,247,596	+				-2.4
2,247,597	-				+1.4
2,247,628	-				+1.0
2,247,628	-				+0.6
2,247,693	-				+1.6
2,247,788	-				-2.4
2,247,829	+				+1.4
2,247,829	+				-0.1
2,247,829	+				+0.1
2,247,935	+				-0.0
2,247,939	+				-1.4
2,247,939	+				-0.0
2,247,939	+				-2.0
2,247,939	+				-1.0
2,247,939	+				-1.0
2,247,940	-				-2.0
2,247,940	-				+1.1
2,247,940	-				+1.0
2,248,008	+				-0.7
2,248,056	+				+0.6
2,248,056	+				+2.9
2,248,056	+				-0.3
2,248,056	+				-0.4
2,248,057	-				+1.4
2,248,057	-				+0.8
2,248,057	-				-1.0
2,248,057	-				+0.6
2,248,093	+		DZA65_RS10595	0.11	+0.2
2,248,094	-		DZA65_RS10595	0.11	-0.4
2,248,094	-				+2.0
2,248,105	-		DZA65_RS10595	0.11	+0.3
2,248,120	-		DZA65_RS10595	0.12	-1.0
2,248,137	+		DZA65_RS10595	0.13	-0.6
2,248,160	+		DZA65_RS10595	0.14	+0.6
2,248,160	+		DZA65_RS10595	0.14	-0.0
2,248,160	+		DZA65_RS10595	0.14	+0.7
2,248,161	-		DZA65_RS10595	0.14	+0.6
2,248,161	-		DZA65_RS10595	0.14	-1.8
2,248,165	-		DZA65_RS10595	0.14	-1.4
2,248,165	-		DZA65_RS10595	0.14	-2.8
2,248,210	+		DZA65_RS10595	0.17	+0.9
2,248,211	-		DZA65_RS10595	0.17	-1.0
2,248,211	-		DZA65_RS10595	0.17	-0.3
2,248,211	-		DZA65_RS10595	0.17	-1.4
2,248,252	-		DZA65_RS10595	0.19	-0.0
2,248,329	+		DZA65_RS10595	0.22	-0.4
2,248,329	+		DZA65_RS10595	0.22	-1.0
2,248,329	+		DZA65_RS10595	0.22	-1.8
2,248,329	+		DZA65_RS10595	0.22	+0.6
2,248,329	+		DZA65_RS10595	0.22	+1.0
2,248,330	-		DZA65_RS10595	0.22	-0.6
2,248,330	-		DZA65_RS10595	0.22	+0.6
2,248,330	-		DZA65_RS10595	0.22	-1.0
2,248,330	-		DZA65_RS10595	0.22	+0.6
2,248,330	-		DZA65_RS10595	0.22	-0.3
2,248,330	-				-1.8
2,248,431	+		DZA65_RS10595	0.27	+0.6
2,248,432	-				-0.8
2,248,432	-		DZA65_RS10595	0.27	+0.1
2,248,432	-		DZA65_RS10595	0.27	-0.4
2,248,434	+		DZA65_RS10595	0.27	-0.4
2,248,434	+		DZA65_RS10595	0.27	-0.0
2,248,434	+				+1.1
2,248,434	+		DZA65_RS10595	0.27	-1.0
2,248,434	+		DZA65_RS10595	0.27	+1.1
2,248,434	+		DZA65_RS10595	0.27	-0.3
2,248,434	+		DZA65_RS10595	0.27	+1.1
2,248,434	+		DZA65_RS10595	0.27	-2.4
2,248,434	+				-2.0
2,248,434	+		DZA65_RS10595	0.27	+0.1
2,248,435	-		DZA65_RS10595	0.28	-1.8
2,248,435	-		DZA65_RS10595	0.28	+0.3
2,248,435	-		DZA65_RS10595	0.28	+0.4
2,248,435	-		DZA65_RS10595	0.28	+1.6
2,248,435	-		DZA65_RS10595	0.28	-0.9
2,248,435	-		DZA65_RS10595	0.28	-2.0
2,248,435	-		DZA65_RS10595	0.28	-0.0
2,248,468	-		DZA65_RS10595	0.29	-0.4
2,248,521	+		DZA65_RS10595	0.32	+0.1
2,248,521	+		DZA65_RS10595	0.32	-1.3
2,248,522	-		DZA65_RS10595	0.32	-1.1
2,248,522	-		DZA65_RS10595	0.32	-1.0
2,248,522	-		DZA65_RS10595	0.32	-0.1
2,248,545	+		DZA65_RS10595	0.33	-1.0
2,248,546	-		DZA65_RS10595	0.33	-0.4
2,248,546	-		DZA65_RS10595	0.33	+1.8
2,248,546	-		DZA65_RS10595	0.33	-0.4
2,248,546	-		DZA65_RS10595	0.33	+0.6
2,248,546	-		DZA65_RS10595	0.33	-1.6
2,248,546	-		DZA65_RS10595	0.33	+1.1
2,248,546	-		DZA65_RS10595	0.33	+0.4
2,248,550	+		DZA65_RS10595	0.33	-1.3
2,248,550	+		DZA65_RS10595	0.33	+0.7
2,248,550	+		DZA65_RS10595	0.33	-0.4
2,248,550	+		DZA65_RS10595	0.33	-0.4
2,248,550	+		DZA65_RS10595	0.33	+0.1
2,248,551	-		DZA65_RS10595	0.33	-0.4
2,248,551	-		DZA65_RS10595	0.33	-0.7
2,248,560	-		DZA65_RS10595	0.34	+1.4
2,248,578	+		DZA65_RS10595	0.35	-0.0
2,248,578	+		DZA65_RS10595	0.35	+2.4
2,248,578	+		DZA65_RS10595	0.35	+0.1
2,248,579	-		DZA65_RS10595	0.35	-1.0
2,248,579	-		DZA65_RS10595	0.35	+2.4
2,248,580	+		DZA65_RS10595	0.35	-2.0
2,248,580	+		DZA65_RS10595	0.35	+0.4
2,248,580	+		DZA65_RS10595	0.35	+0.8
2,248,580	+		DZA65_RS10595	0.35	+0.1
2,248,581	-		DZA65_RS10595	0.35	-2.0
2,248,581	-		DZA65_RS10595	0.35	+0.9
2,248,581	-		DZA65_RS10595	0.35	-1.3
2,248,590	+		DZA65_RS10595	0.35	+0.8
2,248,689	+		DZA65_RS10595	0.40	-0.2
2,248,689	+		DZA65_RS10595	0.40	+0.1
2,248,689	+		DZA65_RS10595	0.40	+0.6
2,248,689	+		DZA65_RS10595	0.40	+1.3
2,248,690	-		DZA65_RS10595	0.40	+1.7
2,248,690	-		DZA65_RS10595	0.40	-0.4
2,248,690	-		DZA65_RS10595	0.40	-0.9
2,248,690	-		DZA65_RS10595	0.40	-0.0
2,248,690	-		DZA65_RS10595	0.40	+1.6
2,248,690	-		DZA65_RS10595	0.40	+0.3
2,248,690	-		DZA65_RS10595	0.40	-1.2
2,248,719	+		DZA65_RS10595	0.41	+1.0
2,248,719	+		DZA65_RS10595	0.41	+1.6
2,248,719	+		DZA65_RS10595	0.41	-0.4
2,248,719	+		DZA65_RS10595	0.41	-0.4
2,248,854	+		DZA65_RS10595	0.48	+1.6
2,248,854	+		DZA65_RS10595	0.48	+0.6
2,248,854	+		DZA65_RS10595	0.48	-0.7
2,248,854	+		DZA65_RS10595	0.48	+1.0
2,248,855	-		DZA65_RS10595	0.48	+0.0
2,248,855	-		DZA65_RS10595	0.48	-1.6
2,248,855	-		DZA65_RS10595	0.48	+0.6
2,248,855	-		DZA65_RS10595	0.48	-1.0
2,248,855	-		DZA65_RS10595	0.48	+0.1
2,248,950	+		DZA65_RS10595	0.53	-1.4
2,248,950	+		DZA65_RS10595	0.53	-0.4
2,248,951	-		DZA65_RS10595	0.53	+2.3
2,248,951	-		DZA65_RS10595	0.53	-0.7
2,248,968	+		DZA65_RS10595	0.54	+0.1
2,248,968	+		DZA65_RS10595	0.54	+1.3
2,248,969	-		DZA65_RS10595	0.54	-0.8
2,248,969	-		DZA65_RS10595	0.54	+1.1
2,248,969	-		DZA65_RS10595	0.54	-0.2
2,248,969	-		DZA65_RS10595	0.54	-0.4
2,248,970	+		DZA65_RS10595	0.54	-1.4
2,248,970	+		DZA65_RS10595	0.54	-0.0
2,248,971	-		DZA65_RS10595	0.54	+0.3
2,248,971	-		DZA65_RS10595	0.54	+1.0
2,249,033	+		DZA65_RS10595	0.57	+1.0
2,249,033	+		DZA65_RS10595	0.57	-1.8
2,249,033	+		DZA65_RS10595	0.57	+0.6
2,249,033	+		DZA65_RS10595	0.57	-1.0
2,249,033	+		DZA65_RS10595	0.57	-1.4
2,249,033	+		DZA65_RS10595	0.57	-1.0
2,249,033	+		DZA65_RS10595	0.57	-0.9
2,249,034	-		DZA65_RS10595	0.57	+0.2
2,249,037	+		DZA65_RS10595	0.57	-0.8
2,249,037	+		DZA65_RS10595	0.57	+0.5
2,249,037	+		DZA65_RS10595	0.57	-2.3
2,249,037	+		DZA65_RS10595	0.57	+0.6
2,249,037	+		DZA65_RS10595	0.57	-0.4
2,249,037	+		DZA65_RS10595	0.57	+1.6
2,249,037	+		DZA65_RS10595	0.57	+1.6
2,249,037	+		DZA65_RS10595	0.57	+1.3
2,249,037	+		DZA65_RS10595	0.57	-0.2
2,249,037	+		DZA65_RS10595	0.57	-2.3
2,249,038	-		DZA65_RS10595	0.57	-0.2
2,249,038	-		DZA65_RS10595	0.57	+0.3
2,249,038	-		DZA65_RS10595	0.57	+1.3
2,249,038	-		DZA65_RS10595	0.57	+0.6
2,249,038	-		DZA65_RS10595	0.57	-1.1
2,249,038	-		DZA65_RS10595	0.57	-0.4
2,249,038	-		DZA65_RS10595	0.57	-1.4
2,249,038	-		DZA65_RS10595	0.57	-2.3
2,249,038	-		DZA65_RS10595	0.57	+0.6
2,249,038	-		DZA65_RS10595	0.57	-0.9
2,249,075	+		DZA65_RS10595	0.59	-1.2
2,249,075	+		DZA65_RS10595	0.59	+0.4
2,249,175	+		DZA65_RS10595	0.64	+0.2
2,249,175	+		DZA65_RS10595	0.64	+0.2
2,249,175	+				-0.4
2,249,175	+		DZA65_RS10595	0.64	-1.7
2,249,175	+		DZA65_RS10595	0.64	+0.2
2,249,176	-		DZA65_RS10595	0.64	+0.2
2,249,217	+		DZA65_RS10595	0.66	-1.0
2,249,218	-		DZA65_RS10595	0.66	-0.8
2,249,223	+		DZA65_RS10595	0.66	+1.1
2,249,243	+		DZA65_RS10595	0.67	-0.4
2,249,243	+		DZA65_RS10595	0.67	-0.9
2,249,273	+		DZA65_RS10595	0.68	-0.6
2,249,273	+		DZA65_RS10595	0.68	+0.6
2,249,273	+		DZA65_RS10595	0.68	-2.4
2,249,274	-		DZA65_RS10595	0.68	-0.2
2,249,274	-		DZA65_RS10595	0.68	-1.8
2,249,299	-		DZA65_RS10595	0.70	+0.0
2,249,313	-		DZA65_RS10595	0.70	+0.6
2,249,378	+		DZA65_RS10595	0.73	-0.8
2,249,378	+		DZA65_RS10595	0.73	-1.4
2,249,378	+		DZA65_RS10595	0.73	-0.1
2,249,378	+		DZA65_RS10595	0.73	-1.4
2,249,379	-		DZA65_RS10595	0.74	-2.4
2,249,379	-				-1.8
2,249,555	+		DZA65_RS10595	0.82	+1.4
2,249,555	+		DZA65_RS10595	0.82	-0.7
2,249,556	-		DZA65_RS10595	0.82	-0.0
2,249,556	-		DZA65_RS10595	0.82	-0.4
2,249,556	-		DZA65_RS10595	0.82	-0.0
2,249,556	-		DZA65_RS10595	0.82	+0.1
2,249,556	-		DZA65_RS10595	0.82	-0.8
2,249,556	-		DZA65_RS10595	0.82	+0.3
2,249,558	+		DZA65_RS10595	0.82	-0.3
2,249,558	+		DZA65_RS10595	0.82	-1.8
2,249,558	+		DZA65_RS10595	0.82	-0.2
2,249,558	+		DZA65_RS10595	0.82	+1.9
2,249,558	+		DZA65_RS10595	0.82	-0.4
2,249,558	+		DZA65_RS10595	0.82	-1.3
2,249,558	+		DZA65_RS10595	0.82	-0.0
2,249,559	-		DZA65_RS10595	0.82	+0.2
2,249,559	-		DZA65_RS10595	0.82	+0.6
2,249,559	-		DZA65_RS10595	0.82	+0.3
2,249,559	-		DZA65_RS10595	0.82	-1.2
2,249,598	+		DZA65_RS10595	0.84	+0.6
2,249,598	+		DZA65_RS10595	0.84	-1.8
2,249,599	-		DZA65_RS10595	0.84	-0.6
2,249,635	-		DZA65_RS10595	0.86	+0.6
2,249,640	+		DZA65_RS10595	0.86	+2.0
2,249,640	+		DZA65_RS10595	0.86	+0.5
2,249,640	+		DZA65_RS10595	0.86	-0.3
2,249,640	+		DZA65_RS10595	0.86	-1.1
2,249,640	+		DZA65_RS10595	0.86	+0.3
2,249,640	+		DZA65_RS10595	0.86	-0.4
2,249,641	-		DZA65_RS10595	0.86	-2.0
2,249,652	+		DZA65_RS10595	0.87	+0.6
2,249,652	+		DZA65_RS10595	0.87	-1.0
2,249,652	+		DZA65_RS10595	0.87	-2.0
2,249,652	+		DZA65_RS10595	0.87	-0.9
2,249,652	+		DZA65_RS10595	0.87	+0.7
2,249,653	-		DZA65_RS10595	0.87	+0.9
2,249,653	-		DZA65_RS10595	0.87	+0.5
2,249,653	-		DZA65_RS10595	0.87	-0.8
2,249,653	-		DZA65_RS10595	0.87	-0.2
2,249,653	-		DZA65_RS10595	0.87	+0.3
2,249,653	-		DZA65_RS10595	0.87	-0.2
2,249,654	+		DZA65_RS10595	0.87	+0.1
2,249,654	+		DZA65_RS10595	0.87	+0.8
2,249,654	+		DZA65_RS10595	0.87	-0.2
2,249,654	+		DZA65_RS10595	0.87	+0.1
2,249,654	+		DZA65_RS10595	0.87	-2.8
2,249,655	-		DZA65_RS10595	0.87	+0.3
2,249,655	-		DZA65_RS10595	0.87	+1.2
2,249,655	-		DZA65_RS10595	0.87	-1.4
2,249,655	-		DZA65_RS10595	0.87	-1.3
2,249,655	-		DZA65_RS10595	0.87	+0.8
2,249,655	-		DZA65_RS10595	0.87	+1.2
2,249,655	-		DZA65_RS10595	0.87	-0.6
2,249,662	-		DZA65_RS10595	0.87	+0.8
2,249,662	-		DZA65_RS10595	0.87	+0.0
2,249,662	-		DZA65_RS10595	0.87	+1.0
2,249,662	-		DZA65_RS10595	0.87	+0.7
2,249,805	-				+1.8
2,249,861	+				-1.0
2,249,861	+				-3.4
2,249,861	+				-0.5
2,249,861	+				-1.9
2,249,862	-				-0.1
2,249,919	+				-0.4
2,249,920	-				-1.5
2,249,955	-				-0.4
2,250,078	+				-0.8
2,250,078	+				-0.2
2,250,079	-				-0.0
2,250,112	+				-0.8
2,250,112	+				-0.6
2,250,113	-				+1.0
2,250,221	+				-1.5
2,250,222	-				-0.3
2,250,244	+				-1.5
2,250,245	-				+0.6
2,250,329	+				+1.3
2,250,365	+				-0.8
2,250,366	-				-0.2
2,250,377	-				-0.0
2,250,387	+				-1.0
2,250,388	-				+0.2
2,250,434	+				+0.5
2,250,453	+				+2.9
2,250,453	+				-0.5
2,250,453	+				-1.0
2,250,453	+				+1.1
2,250,454	-				-1.2
2,250,454	-				-0.5
2,250,454	-				-1.2
2,250,457	+				-0.3
2,250,457	+				+0.8
2,250,457	+				-0.7
2,250,458	-				+0.2
2,250,458	-				+1.4
2,250,458	-				+0.1
2,250,472	-				+2.1
2,250,472	-				+1.1
2,250,531	+		DZA65_RS10600	0.34	-1.0
2,250,531	+		DZA65_RS10600	0.34	+0.8
2,250,531	+		DZA65_RS10600	0.34	+0.5
2,250,532	-		DZA65_RS10600	0.35	+0.1
2,250,591	+		DZA65_RS10600	0.60	-0.2
2,250,592	-		DZA65_RS10600	0.61	+3.3
2,250,592	-		DZA65_RS10600	0.61	+0.8
2,250,592	-		DZA65_RS10600	0.61	-1.6
2,250,592	-		DZA65_RS10600	0.61	-0.7
2,250,654	+		DZA65_RS10600	0.87	-1.8
2,250,654	+		DZA65_RS10600	0.87	+0.5
2,250,675	+				-0.3
2,250,675	+				+0.3
2,250,675	+				-1.5
2,250,676	-				-1.3
2,250,676	-				+0.5
2,250,708	-				+1.0
2,250,708	-				+0.3
2,250,782	+				+0.3
2,250,783	-				-0.9
2,250,903	+		DZA65_RS10605	0.15	+1.1