Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10260

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,171,853	+		DZA65_RS10250	0.79	+0.2
2,171,937	-		DZA65_RS10250	0.84	-0.0
2,171,983	-		DZA65_RS10250	0.87	-2.0
2,171,983	-		DZA65_RS10250	0.87	+0.3
2,171,983	-		DZA65_RS10250	0.87	-0.3
2,172,238	-				-1.2
2,172,238	-				-1.8
2,172,308	+		DZA65_RS10255	0.17	-1.1
2,172,309	-		DZA65_RS10255	0.17	-0.3
2,172,309	-		DZA65_RS10255	0.17	-0.7
2,172,322	-		DZA65_RS10255	0.20	-1.2
2,172,322	-		DZA65_RS10255	0.20	+1.6
2,172,390	+		DZA65_RS10255	0.35	-0.7
2,172,390	+		DZA65_RS10255	0.35	-0.2
2,172,390	+		DZA65_RS10255	0.35	-1.4
2,172,390	+		DZA65_RS10255	0.35	+1.6
2,172,391	-		DZA65_RS10255	0.36	-0.9
2,172,431	+		DZA65_RS10255	0.45	+1.1
2,172,431	+		DZA65_RS10255	0.45	+0.1
2,172,431	+		DZA65_RS10255	0.45	+0.6
2,172,431	+		DZA65_RS10255	0.45	+1.2
2,172,432	-		DZA65_RS10255	0.45	-1.2
2,172,485	-		DZA65_RS10255	0.57	+0.3
2,172,485	-		DZA65_RS10255	0.57	-1.4
2,172,487	+		DZA65_RS10255	0.58	+0.4
2,172,487	+		DZA65_RS10255	0.58	-0.4
2,172,487	+		DZA65_RS10255	0.58	+0.6
2,172,487	+		DZA65_RS10255	0.58	+0.6
2,172,499	+		DZA65_RS10255	0.60	-0.1
2,172,499	+		DZA65_RS10255	0.60	-0.8
2,172,500	-		DZA65_RS10255	0.61	-0.0
2,172,500	-		DZA65_RS10255	0.61	+0.3
2,172,549	-		DZA65_RS10255	0.72	+0.2
2,172,566	-		DZA65_RS10255	0.76	-1.2
2,172,654	-				+2.6
2,172,659	-				+0.6
2,172,673	-				-1.4
2,172,703	+				+0.5
2,172,703	+				+0.6
2,172,704	-				-0.1
2,172,704	-				-0.8
2,172,704	-				+0.9
2,172,704	-				-0.7
2,172,773	+				+0.8
2,172,794	-				+3.6
2,172,803	+				+0.1
2,172,804	-				+0.4
2,172,845	+				+0.9
2,172,870	+		DZA65_RS10260	0.12	+0.9
2,172,870	+		DZA65_RS10260	0.12	-0.0
2,172,870	+		DZA65_RS10260	0.12	+0.6
2,172,874	-		DZA65_RS10260	0.12	-0.1
2,173,051	+		DZA65_RS10260	0.28	+0.6
2,173,101	+		DZA65_RS10260	0.32	-1.8
2,173,101	+		DZA65_RS10260	0.32	-0.3
2,173,102	-		DZA65_RS10260	0.32	+0.9
2,173,232	+		DZA65_RS10260	0.44	+0.2
2,173,232	+		DZA65_RS10260	0.44	+0.9
2,173,434	+		DZA65_RS10260	0.62	-0.0
2,173,434	+		DZA65_RS10260	0.62	-0.4
2,173,434	+		DZA65_RS10260	0.62	+0.6
2,173,434	+		DZA65_RS10260	0.62	+0.2
2,173,435	-		DZA65_RS10260	0.62	-0.7
2,173,435	-		DZA65_RS10260	0.62	-0.4
2,173,435	-		DZA65_RS10260	0.62	+1.9
2,173,435	-		DZA65_RS10260	0.62	+0.8
2,173,508	+		DZA65_RS10260	0.69	+0.6
2,173,508	+		DZA65_RS10260	0.69	+1.0
2,173,852	-				-1.4
2,173,905	+				+0.2
2,173,906	-				+0.6
2,173,906	-				-0.4
2,173,906	-				-0.4
2,173,922	-				-0.7
2,173,922	-				-1.2
2,173,931	-				-0.4
2,173,937	+				-0.8
2,173,937	+				-0.6
2,173,938	-				-0.3
2,173,953	+				+0.3
2,173,953	+				-2.6
2,173,953	+				+1.2
2,173,954	-				-1.2
2,173,960	+				+0.6
2,173,960	+				+1.8
2,173,960	+				-0.1
2,173,960	+				-0.7
2,173,960	+				+1.2
2,173,960	+				-0.0
2,173,961	-				-1.0
2,173,961	-				-1.0
2,173,962	+				-0.9
2,173,962	+				+1.0
2,173,962	+				+0.6
2,173,962	+				+0.3
2,173,962	+				+1.2
2,173,962	+				+0.2
2,173,962	+				-0.9
2,173,963	-				-0.6
2,173,963	-				+1.2
2,173,963	-				-0.6
2,173,963	-				-1.0
2,173,963	-				+0.6
2,174,167	+		DZA65_RS10265	0.43	+0.6
2,174,167	+		DZA65_RS10265	0.43	+1.4
2,174,167	+		DZA65_RS10265	0.43	+0.8
2,174,168	-		DZA65_RS10265	0.43	-0.1
2,174,178	-		DZA65_RS10265	0.45	+0.2
2,174,178	-		DZA65_RS10265	0.45	+0.2
2,174,179	+		DZA65_RS10265	0.45	-0.0
2,174,179	+		DZA65_RS10265	0.45	+1.0
2,174,179	+		DZA65_RS10265	0.45	-0.7
2,174,179	+		DZA65_RS10265	0.45	-0.6
2,174,179	+		DZA65_RS10265	0.45	-0.0
2,174,179	+		DZA65_RS10265	0.45	+0.6
2,174,179	+		DZA65_RS10265	0.45	-0.1
2,174,180	-		DZA65_RS10265	0.45	+0.7
2,174,190	+		DZA65_RS10265	0.47	-1.1
2,174,208	+				+0.9
2,174,209	-		DZA65_RS10265	0.51	-1.2
2,174,337	+		DZA65_RS10265	0.77	-0.6
2,174,340	+		DZA65_RS10265	0.78	-0.4
2,174,340	+		DZA65_RS10265	0.78	-1.0
2,174,341	-		DZA65_RS10265	0.78	-1.0
2,174,341	-		DZA65_RS10265	0.78	+0.8
2,174,403	+				-0.7
2,174,403	+				+1.2
2,174,416	+				+1.3
2,174,416	+				+0.6
2,174,416	+				+0.7
2,174,417	-				-1.0
2,174,452	+				+0.6
2,174,452	+				+0.6
2,174,452	+				-0.1
2,174,452	+				+0.3
2,174,452	+				+1.6
2,174,452	+				-0.7
2,174,453	-				+1.0
2,174,454	+				+0.6
2,174,454	+				+0.7
2,174,454	+				+0.8
2,174,455	-				+0.6
2,174,455	-				-0.4
2,174,455	-				+0.1
2,174,455	-				+0.5
2,174,455	-				-0.6
2,174,477	+				-1.4
2,174,478	-				-1.7
2,174,478	-				-2.0
2,174,493	+				+0.1
2,174,493	+				+1.2
2,174,493	+				-2.0
2,174,493	+				+1.0
2,174,497	-				+0.6
2,174,538	+				-0.7
2,174,550	-				+0.4
2,174,583	-				+1.2
2,174,589	+				-0.3
2,174,590	-				+1.2
2,174,590	-				-0.7
2,174,598	+				-1.2
2,174,598	+				+0.6
2,174,598	+				+0.3
2,174,598	+				+0.5
2,174,599	-				+1.9
2,174,599	-				-0.0
2,174,599	-				-1.7
2,174,599	-				-2.0
2,174,599	-				+0.6
2,174,620	+				+1.0
2,174,620	+				+0.6
2,174,621	-				+0.6
2,174,662	+				-1.0
2,174,709	+				+0.3
2,174,798	+		DZA65_RS10270	0.21	+2.0
2,174,799	-		DZA65_RS10270	0.22	+2.2
2,174,823	-		DZA65_RS10270	0.25	+1.4