Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09260

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09255 and DZA65_RS09260 are separated by 227 nucleotidesDZA65_RS09260 and DZA65_RS09265 are separated by 31 nucleotidesDZA65_RS09265 and DZA65_RS09270 are separated by 406 nucleotides DZA65_RS09255: DZA65_RS09255 - biotin-dependent carboxyltransferase, at 1,952,258 to 1,953,265 _RS09255 DZA65_RS09260: DZA65_RS09260 - allantoin permease, at 1,953,493 to 1,954,797 _RS09260 DZA65_RS09265: DZA65_RS09265 - Hsp20 family protein, at 1,954,829 to 1,954,993 _RS09265 DZA65_RS09270: DZA65_RS09270 - hypothetical protein, at 1,955,400 to 1,955,792 _RS09270 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1952.624 kb on + strand, within DZA65_RS09255at 1952.624 kb on + strand, within DZA65_RS09255at 1952.624 kb on + strand, within DZA65_RS09255at 1952.625 kb on - strand, within DZA65_RS09255at 1952.681 kb on + strand, within DZA65_RS09255at 1952.682 kb on - strand, within DZA65_RS09255at 1952.682 kb on - strand, within DZA65_RS09255at 1952.683 kb on + strand, within DZA65_RS09255at 1952.751 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.121 kb on + strand, within DZA65_RS09255at 1953.122 kb on - strand, within DZA65_RS09255at 1953.164 kb on + strand, within DZA65_RS09255at 1953.165 kb on - strandat 1953.165 kb on - strandat 1953.283 kb on + strandat 1953.366 kb on + strandat 1953.367 kb on - strandat 1953.444 kb on + strandat 1953.444 kb on + strandat 1953.445 kb on - strandat 1953.445 kb on - strandat 1953.445 kb on - strandat 1953.466 kb on + strandat 1953.466 kb on + strandat 1953.467 kb on - strandat 1953.467 kb on - strandat 1953.470 kb on + strandat 1953.470 kb on + strandat 1953.470 kb on + strandat 1953.471 kb on - strandat 1953.503 kb on + strandat 1953.503 kb on + strandat 1953.503 kb on + strandat 1953.504 kb on - strandat 1953.504 kb on - strandat 1953.619 kb on + strandat 1953.619 kb on + strandat 1953.619 kb on + strandat 1953.620 kb on - strandat 1953.653 kb on - strand, within DZA65_RS09260at 1953.832 kb on + strand, within DZA65_RS09260at 1953.832 kb on + strand, within DZA65_RS09260at 1953.832 kb on + strand, within DZA65_RS09260at 1953.833 kb on - strand, within DZA65_RS09260at 1953.833 kb on - strand, within DZA65_RS09260at 1953.833 kb on - strand, within DZA65_RS09260at 1953.833 kb on - strand, within DZA65_RS09260at 1953.928 kb on + strand, within DZA65_RS09260at 1953.928 kb on + strand, within DZA65_RS09260at 1953.929 kb on - strand, within DZA65_RS09260at 1953.929 kb on - strand, within DZA65_RS09260at 1954.000 kb on + strand, within DZA65_RS09260at 1954.046 kb on - strand, within DZA65_RS09260at 1954.046 kb on - strand, within DZA65_RS09260at 1954.097 kb on - strand, within DZA65_RS09260at 1954.120 kb on + strand, within DZA65_RS09260at 1954.120 kb on + strand, within DZA65_RS09260at 1954.120 kb on + strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.121 kb on - strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.123 kb on + strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.124 kb on - strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.150 kb on + strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.151 kb on - strand, within DZA65_RS09260at 1954.163 kb on - strand, within DZA65_RS09260at 1954.196 kb on - strand, within DZA65_RS09260at 1954.218 kb on + strand, within DZA65_RS09260at 1954.228 kb on + strand, within DZA65_RS09260at 1954.229 kb on - strand, within DZA65_RS09260at 1954.229 kb on - strand, within DZA65_RS09260at 1954.267 kb on + strand, within DZA65_RS09260at 1954.267 kb on + strand, within DZA65_RS09260at 1954.267 kb on + strand, within DZA65_RS09260at 1954.268 kb on - strand, within DZA65_RS09260at 1954.268 kb on - strand, within DZA65_RS09260at 1954.268 kb on - strand, within DZA65_RS09260at 1954.399 kb on + strand, within DZA65_RS09260at 1954.399 kb on + strand, within DZA65_RS09260at 1954.399 kb on + strand, within DZA65_RS09260at 1954.399 kb on + strand, within DZA65_RS09260at 1954.399 kb on + strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.400 kb on - strand, within DZA65_RS09260at 1954.403 kb on - strand, within DZA65_RS09260at 1954.403 kb on - strand, within DZA65_RS09260at 1954.498 kb on + strand, within DZA65_RS09260at 1954.498 kb on + strand, within DZA65_RS09260at 1954.498 kb on + strand, within DZA65_RS09260at 1954.498 kb on + strand, within DZA65_RS09260at 1954.499 kb on - strand, within DZA65_RS09260at 1954.530 kb on + strand, within DZA65_RS09260at 1954.531 kb on - strand, within DZA65_RS09260at 1954.531 kb on - strand, within DZA65_RS09260at 1954.596 kb on + strand, within DZA65_RS09260at 1954.597 kb on - strand, within DZA65_RS09260at 1954.597 kb on - strandat 1954.597 kb on - strand, within DZA65_RS09260at 1954.597 kb on - strand, within DZA65_RS09260at 1954.644 kb on + strand, within DZA65_RS09260at 1954.718 kb on + strandat 1954.718 kb on + strandat 1954.718 kb on + strandat 1954.719 kb on - strandat 1954.765 kb on + strandat 1954.765 kb on + strandat 1954.765 kb on + strandat 1954.766 kb on - strandat 1954.766 kb on - strandat 1954.832 kb on + strandat 1954.832 kb on + strandat 1954.833 kb on - strandat 1954.833 kb on - strandat 1954.852 kb on + strand, within DZA65_RS09265at 1954.852 kb on + strand, within DZA65_RS09265at 1954.852 kb on + strand, within DZA65_RS09265at 1954.853 kb on - strand, within DZA65_RS09265at 1954.853 kb on - strand, within DZA65_RS09265at 1954.853 kb on - strand, within DZA65_RS09265at 1954.853 kb on - strand, within DZA65_RS09265at 1954.909 kb on + strand, within DZA65_RS09265at 1955.014 kb on - strandat 1955.151 kb on - strandat 1955.257 kb on + strandat 1955.411 kb on - strandat 1955.499 kb on + strand, within DZA65_RS09270at 1955.499 kb on + strand, within DZA65_RS09270at 1955.536 kb on - strand, within DZA65_RS09270at 1955.599 kb on - strand, within DZA65_RS09270at 1955.782 kb on + strandat 1955.782 kb on + strandat 1955.783 kb on - strandat 1955.783 kb on - strandat 1955.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,952,624 + DZA65_RS09255 0.36 +1.1
1,952,624 + DZA65_RS09255 0.36 +1.2
1,952,624 + DZA65_RS09255 0.36 +0.1
1,952,625 - DZA65_RS09255 0.36 +1.5
1,952,681 + DZA65_RS09255 0.42 -1.4
1,952,682 - DZA65_RS09255 0.42 -2.6
1,952,682 - DZA65_RS09255 0.42 +1.6
1,952,683 + DZA65_RS09255 0.42 +0.4
1,952,751 + DZA65_RS09255 0.49 -1.3
1,952,846 + DZA65_RS09255 0.58 +0.6
1,952,846 + DZA65_RS09255 0.58 +0.1
1,952,846 + DZA65_RS09255 0.58 +0.0
1,952,846 + DZA65_RS09255 0.58 +0.9
1,952,846 + DZA65_RS09255 0.58 -0.4
1,952,846 + DZA65_RS09255 0.58 -1.4
1,952,847 - DZA65_RS09255 0.58 +0.2
1,952,847 - DZA65_RS09255 0.58 -1.4
1,952,847 - DZA65_RS09255 0.58 +1.6
1,953,102 - DZA65_RS09255 0.84 -0.4
1,953,102 - DZA65_RS09255 0.84 +0.8
1,953,102 - DZA65_RS09255 0.84 -0.5
1,953,102 - DZA65_RS09255 0.84 -1.0
1,953,121 + DZA65_RS09255 0.86 +0.3
1,953,122 - DZA65_RS09255 0.86 +0.0
1,953,164 + DZA65_RS09255 0.90 +0.3
1,953,165 - +0.6
1,953,165 - -1.7
1,953,283 + +2.5
1,953,366 + -1.0
1,953,367 - +0.0
1,953,444 + +3.2
1,953,444 + -1.2
1,953,445 - -1.0
1,953,445 - -0.6
1,953,445 - +1.0
1,953,466 + +0.0
1,953,466 + -1.0
1,953,467 - +0.0
1,953,467 - +0.4
1,953,470 + +1.0
1,953,470 + -0.7
1,953,470 + -1.0
1,953,471 - +0.1
1,953,503 + +0.0
1,953,503 + +0.6
1,953,503 + +0.6
1,953,504 - +1.5
1,953,504 - +0.0
1,953,619 + -0.4
1,953,619 + -1.7
1,953,619 + -1.5
1,953,620 - -2.0
1,953,653 - DZA65_RS09260 0.12 +1.0
1,953,832 + DZA65_RS09260 0.26 +0.2
1,953,832 + DZA65_RS09260 0.26 +0.6
1,953,832 + DZA65_RS09260 0.26 -0.4
1,953,833 - DZA65_RS09260 0.26 -1.0
1,953,833 - DZA65_RS09260 0.26 -0.2
1,953,833 - DZA65_RS09260 0.26 -1.4
1,953,833 - DZA65_RS09260 0.26 -2.0
1,953,928 + DZA65_RS09260 0.33 +0.7
1,953,928 + DZA65_RS09260 0.33 +0.0
1,953,929 - DZA65_RS09260 0.33 -0.6
1,953,929 - DZA65_RS09260 0.33 +0.3
1,954,000 + DZA65_RS09260 0.39 -0.8
1,954,046 - DZA65_RS09260 0.42 +0.8
1,954,046 - DZA65_RS09260 0.42 +0.4
1,954,097 - DZA65_RS09260 0.46 -1.3
1,954,120 + DZA65_RS09260 0.48 +0.6
1,954,120 + DZA65_RS09260 0.48 +0.0
1,954,120 + DZA65_RS09260 0.48 +0.0
1,954,121 - DZA65_RS09260 0.48 -1.2
1,954,121 - DZA65_RS09260 0.48 -1.7
1,954,121 - DZA65_RS09260 0.48 -0.4
1,954,121 - DZA65_RS09260 0.48 -0.9
1,954,121 - DZA65_RS09260 0.48 +1.6
1,954,121 - DZA65_RS09260 0.48 -0.8
1,954,121 - DZA65_RS09260 0.48 -2.9
1,954,123 + DZA65_RS09260 0.48 +0.6
1,954,123 + DZA65_RS09260 0.48 +0.0
1,954,123 + DZA65_RS09260 0.48 -1.0
1,954,123 + DZA65_RS09260 0.48 -3.0
1,954,123 + DZA65_RS09260 0.48 -0.1
1,954,123 + DZA65_RS09260 0.48 -2.2
1,954,123 + DZA65_RS09260 0.48 +0.4
1,954,123 + DZA65_RS09260 0.48 +0.4
1,954,123 + DZA65_RS09260 0.48 -1.0
1,954,124 - DZA65_RS09260 0.48 -0.2
1,954,124 - DZA65_RS09260 0.48 -0.3
1,954,124 - DZA65_RS09260 0.48 -2.0
1,954,124 - DZA65_RS09260 0.48 -1.0
1,954,124 - DZA65_RS09260 0.48 +0.4
1,954,124 - DZA65_RS09260 0.48 +1.4
1,954,124 - DZA65_RS09260 0.48 -1.4
1,954,150 + DZA65_RS09260 0.50 -0.4
1,954,150 + DZA65_RS09260 0.50 +0.6
1,954,150 + DZA65_RS09260 0.50 -1.4
1,954,150 + DZA65_RS09260 0.50 -1.4
1,954,150 + DZA65_RS09260 0.50 -1.4
1,954,150 + DZA65_RS09260 0.50 -0.5
1,954,150 + DZA65_RS09260 0.50 +0.0
1,954,150 + DZA65_RS09260 0.50 +0.9
1,954,150 + DZA65_RS09260 0.50 +0.6
1,954,151 - DZA65_RS09260 0.50 -2.7
1,954,151 - DZA65_RS09260 0.50 +0.9
1,954,151 - DZA65_RS09260 0.50 +0.0
1,954,151 - DZA65_RS09260 0.50 -2.7
1,954,151 - DZA65_RS09260 0.50 -0.1
1,954,151 - DZA65_RS09260 0.50 +1.9
1,954,151 - DZA65_RS09260 0.50 -0.4
1,954,163 - DZA65_RS09260 0.51 -1.9
1,954,196 - DZA65_RS09260 0.54 -0.4
1,954,218 + DZA65_RS09260 0.56 +0.6
1,954,228 + DZA65_RS09260 0.56 -1.7
1,954,229 - DZA65_RS09260 0.56 +1.5
1,954,229 - DZA65_RS09260 0.56 +0.1
1,954,267 + DZA65_RS09260 0.59 -0.8
1,954,267 + DZA65_RS09260 0.59 +0.2
1,954,267 + DZA65_RS09260 0.59 -0.2
1,954,268 - DZA65_RS09260 0.59 -2.2
1,954,268 - DZA65_RS09260 0.59 -0.2
1,954,268 - DZA65_RS09260 0.59 -1.0
1,954,399 + DZA65_RS09260 0.69 -1.4
1,954,399 + DZA65_RS09260 0.69 -0.2
1,954,399 + DZA65_RS09260 0.69 +1.2
1,954,399 + DZA65_RS09260 0.69 -0.6
1,954,399 + DZA65_RS09260 0.69 -0.4
1,954,400 - DZA65_RS09260 0.70 -1.4
1,954,400 - DZA65_RS09260 0.70 -1.4
1,954,400 - DZA65_RS09260 0.70 +0.8
1,954,400 - DZA65_RS09260 0.70 +0.1
1,954,400 - DZA65_RS09260 0.70 -0.8
1,954,400 - DZA65_RS09260 0.70 -1.4
1,954,400 - DZA65_RS09260 0.70 -0.9
1,954,400 - DZA65_RS09260 0.70 -0.1
1,954,403 - DZA65_RS09260 0.70 +1.6
1,954,403 - DZA65_RS09260 0.70 +0.0
1,954,498 + DZA65_RS09260 0.77 -1.0
1,954,498 + DZA65_RS09260 0.77 +1.1
1,954,498 + DZA65_RS09260 0.77 -1.0
1,954,498 + DZA65_RS09260 0.77 -0.7
1,954,499 - DZA65_RS09260 0.77 -1.0
1,954,530 + DZA65_RS09260 0.79 -0.9
1,954,531 - DZA65_RS09260 0.80 +0.0
1,954,531 - DZA65_RS09260 0.80 +0.9
1,954,596 + DZA65_RS09260 0.85 -1.0
1,954,597 - DZA65_RS09260 0.85 +0.6
1,954,597 - +0.2
1,954,597 - DZA65_RS09260 0.85 +0.6
1,954,597 - DZA65_RS09260 0.85 +1.6
1,954,644 + DZA65_RS09260 0.88 +1.2
1,954,718 + +0.0
1,954,718 + -1.0
1,954,718 + -1.0
1,954,719 - -0.5
1,954,765 + -1.0
1,954,765 + -1.2
1,954,765 + -0.9
1,954,766 - +0.6
1,954,766 - -1.6
1,954,832 + +0.0
1,954,832 + +0.8
1,954,833 - -1.4
1,954,833 - +0.1
1,954,852 + DZA65_RS09265 0.14 -0.2
1,954,852 + DZA65_RS09265 0.14 +0.0
1,954,852 + DZA65_RS09265 0.14 +2.3
1,954,853 - DZA65_RS09265 0.15 -0.3
1,954,853 - DZA65_RS09265 0.15 +0.2
1,954,853 - DZA65_RS09265 0.15 -0.7
1,954,853 - DZA65_RS09265 0.15 +0.6
1,954,909 + DZA65_RS09265 0.48 -1.6
1,955,014 - -1.7
1,955,151 - +1.2
1,955,257 + +0.0
1,955,411 - -0.0
1,955,499 + DZA65_RS09270 0.25 -0.6
1,955,499 + DZA65_RS09270 0.25 -0.2
1,955,536 - DZA65_RS09270 0.35 -0.7
1,955,599 - DZA65_RS09270 0.51 +1.0
1,955,782 + -0.7
1,955,782 + +1.2
1,955,783 - -0.8
1,955,783 - -1.1
1,955,783 - -0.4

Or see this region's nucleotide sequence