Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09000

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,895,886	-		DZA65_RS08995	0.54	+0.6
1,896,004	+		DZA65_RS08995	0.66	-0.4
1,896,004	+		DZA65_RS08995	0.66	-0.6
1,896,004	+		DZA65_RS08995	0.66	-0.7
1,896,004	+		DZA65_RS08995	0.66	+0.2
1,896,004	+		DZA65_RS08995	0.66	+1.4
1,896,004	+		DZA65_RS08995	0.66	+0.7
1,896,004	+				+0.0
1,896,004	+		DZA65_RS08995	0.66	+1.2
1,896,005	-		DZA65_RS08995	0.66	+0.1
1,896,005	-		DZA65_RS08995	0.66	-0.1
1,896,005	-		DZA65_RS08995	0.66	+0.3
1,896,005	-		DZA65_RS08995	0.66	+1.4
1,896,005	-		DZA65_RS08995	0.66	-0.2
1,896,005	-		DZA65_RS08995	0.66	+0.6
1,896,005	-		DZA65_RS08995	0.66	-1.3
1,896,005	-		DZA65_RS08995	0.66	+0.2
1,896,005	-		DZA65_RS08995	0.66	+0.8
1,896,009	+		DZA65_RS08995	0.66	-2.9
1,896,010	-		DZA65_RS08995	0.67	+0.6
1,896,139	-		DZA65_RS08995	0.80	+1.2
1,896,330	+				-0.1
1,896,331	-				+1.2
1,896,334	+				+0.6
1,896,334	+				+0.2
1,896,334	+				-1.0
1,896,334	+				-0.4
1,896,335	-				+0.9
1,896,335	-				+0.6
1,896,368	-				+0.0
1,896,374	+				+0.2
1,896,374	+				+0.3
1,896,374	+				+0.0
1,896,374	+				-1.0
1,896,374	+				+1.6
1,896,375	-				-2.2
1,896,375	-				-1.2
1,896,375	-				+0.3
1,896,375	-				+1.4
1,896,375	-				+1.2
1,896,376	+				-1.7
1,896,376	+				+1.9
1,896,376	+				+1.2
1,896,376	+				+0.6
1,896,376	+				-1.0
1,896,376	+				+1.3
1,896,376	+				-0.4
1,896,376	+				-0.1
1,896,377	-				-1.4
1,896,377	-				+0.8
1,896,377	-				-1.7
1,896,377	-				-1.7
1,896,377	-				-2.2
1,896,377	-				-0.1
1,896,377	-				-1.1
1,896,377	-				-0.4
1,896,377	-				-1.0
1,896,377	-				+1.3
1,896,377	-				-1.1
1,896,377	-				-2.4
1,896,378	+				-0.0
1,896,378	+				+0.6
1,896,378	+				+0.9
1,896,378	+				+0.0
1,896,378	+				-3.0
1,896,379	-				+0.6
1,896,379	-				+0.7
1,896,379	-				+0.3
1,896,379	-				+1.3
1,896,405	+				+0.0
1,896,406	-				+1.0
1,896,577	-				-2.0
1,896,630	+				+0.2
1,896,630	+				+0.9
1,896,631	-				-1.2
1,896,631	-				+1.6
1,896,631	-				+0.6
1,896,723	+				-0.6
1,896,723	+				-0.6
1,896,723	+				+1.6
1,896,723	+				-0.2
1,896,724	-				-0.8
1,896,745	+				-1.1
1,896,746	-				-1.0
1,896,746	-				-1.7
1,896,746	-				-1.3
1,896,746	-				-0.3
1,896,782	+				-3.0
1,896,783	-				-1.7
1,896,787	+				+1.0
1,896,788	-				-0.4
1,896,808	+				-1.0
1,896,825	-				-3.2
1,896,825	-				-0.4
1,896,825	-				+0.3
1,896,829	+				-1.7
1,896,830	-				-0.4
1,896,830	-				-1.1
1,896,864	+				-1.9
1,896,865	-				+0.6
1,896,867	+				-0.6
1,896,868	-				-1.1
1,896,868	-				-0.4
1,896,897	-				-0.6
1,896,908	+				+0.1
1,896,908	+				-1.6
1,896,908	+				-1.0
1,896,908	+				-1.0
1,896,909	-				-1.4
1,896,909	-				+0.6
1,896,909	-				+1.9
1,896,912	+				-2.0
1,896,912	+				+1.6
1,896,912	+				-1.7
1,896,912	+				-0.8
1,896,913	-				-0.5
1,896,913	-				+0.8
1,896,913	-				-2.0
1,896,913	-				-1.0
1,896,913	-				-0.1
1,897,071	-		DZA65_RS09000	0.25	+1.2
1,897,073	+				-1.9
1,897,073	+		DZA65_RS09000	0.25	-0.1
1,897,073	+		DZA65_RS09000	0.25	-0.9
1,897,073	+		DZA65_RS09000	0.25	-0.4
1,897,073	+		DZA65_RS09000	0.25	-0.6
1,897,074	-		DZA65_RS09000	0.25	+0.8
1,897,265	+		DZA65_RS09000	0.44	-0.4
1,897,310	+		DZA65_RS09000	0.49	-1.0
1,897,395	-		DZA65_RS09000	0.58	+0.1
1,897,395	-		DZA65_RS09000	0.58	-1.1
1,897,395	-		DZA65_RS09000	0.58	-0.6
1,897,548	+		DZA65_RS09000	0.73	+0.3
1,897,579	-		DZA65_RS09000	0.76	-1.2
1,897,722	-				+0.6
1,897,784	+				-0.6
1,897,802	+				+0.4
1,897,845	+				-2.4
1,897,845	+				+1.3
1,897,845	+				-0.4
1,897,845	+				+0.6
1,897,845	+				-0.6
1,897,846	-				-1.1
1,897,846	-				-0.3
1,897,846	-				-0.2
1,897,846	-				-1.9
1,897,846	-				-0.6
1,897,846	-				-0.3
1,897,846	-				-0.8
1,897,846	-				-1.6
1,897,926	+		DZA65_RS09005	0.16	-0.1
1,897,926	+		DZA65_RS09005	0.16	-1.7
1,897,926	+		DZA65_RS09005	0.16	+0.0
1,897,926	+		DZA65_RS09005	0.16	+0.5
1,897,926	+		DZA65_RS09005	0.16	-1.4
1,897,926	+		DZA65_RS09005	0.16	+0.3
1,897,927	-		DZA65_RS09005	0.16	-0.4
1,897,927	-		DZA65_RS09005	0.16	-0.8
1,897,927	-		DZA65_RS09005	0.16	-0.5
1,897,939	+		DZA65_RS09005	0.18	+0.0
1,898,177	-		DZA65_RS09005	0.65	+0.4
1,898,186	+		DZA65_RS09005	0.66	+1.3
1,898,187	-		DZA65_RS09005	0.66	-1.2
1,898,187	-		DZA65_RS09005	0.66	+1.5
1,898,187	-		DZA65_RS09005	0.66	+2.2
1,898,187	-		DZA65_RS09005	0.66	+0.6
1,898,230	-		DZA65_RS09005	0.75	-1.7
1,898,292	+		DZA65_RS09005	0.87	-2.2
1,898,292	+		DZA65_RS09005	0.87	+0.2
1,898,292	+		DZA65_RS09005	0.87	+1.7
1,898,296	-		DZA65_RS09005	0.88	-1.1
1,898,332	-				-1.4
1,898,356	+				+1.0
1,898,356	+				-0.3
1,898,356	+				-1.7
1,898,364	+				-0.4
1,898,364	+				+0.6
1,898,385	+				-0.4
1,898,386	-				-1.0
1,898,386	-				-2.9
1,898,743	+		DZA65_RS09010	0.78	-1.7
1,898,743	+		DZA65_RS09010	0.78	+0.1
1,898,743	+		DZA65_RS09010	0.78	-2.6
1,898,744	-		DZA65_RS09010	0.78	-1.4
1,898,744	-		DZA65_RS09010	0.78	-0.7
1,898,744	-		DZA65_RS09010	0.78	-0.8
1,898,744	-		DZA65_RS09010	0.78	+0.9
1,898,780	+		DZA65_RS09010	0.86	+0.4
1,898,781	-		DZA65_RS09010	0.86	-2.7