Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08105

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,696,447	+				+2.2
1,696,447	+				+0.7
1,696,448	-				+0.0
1,696,448	-				-0.4
1,696,448	-				-1.9
1,696,448	-				-1.0
1,696,549	+				+1.0
1,696,549	+				-0.3
1,696,549	+				-1.2
1,696,550	-				-1.7
1,696,550	-				-0.9
1,696,550	-				+0.2
1,696,737	+		DZA65_RS08100	0.25	+0.3
1,696,738	-		DZA65_RS08100	0.25	-0.2
1,696,738	-		DZA65_RS08100	0.25	-0.7
1,696,738	-		DZA65_RS08100	0.25	-0.9
1,696,738	-		DZA65_RS08100	0.25	+0.3
1,696,875	+		DZA65_RS08100	0.42	+2.2
1,696,875	+		DZA65_RS08100	0.42	+1.2
1,696,875	+		DZA65_RS08100	0.42	-0.1
1,696,875	+		DZA65_RS08100	0.42	+0.9
1,696,875	+		DZA65_RS08100	0.42	-1.9
1,696,876	-		DZA65_RS08100	0.43	+0.7
1,696,876	-		DZA65_RS08100	0.43	-0.7
1,696,876	-		DZA65_RS08100	0.43	+1.7
1,696,950	+		DZA65_RS08100	0.52	+0.2
1,696,951	-		DZA65_RS08100	0.52	+0.9
1,696,951	-		DZA65_RS08100	0.52	-1.1
1,696,951	-		DZA65_RS08100	0.52	-0.3
1,696,951	-		DZA65_RS08100	0.52	-1.3
1,697,096	-		DZA65_RS08100	0.71	-1.7
1,697,175	+		DZA65_RS08100	0.81	+1.7
1,697,175	+		DZA65_RS08100	0.81	-1.3
1,697,175	+		DZA65_RS08100	0.81	+1.7
1,697,175	+		DZA65_RS08100	0.81	-0.3
1,697,175	+		DZA65_RS08100	0.81	+0.2
1,697,175	+				+0.7
1,697,176	-		DZA65_RS08100	0.81	-1.3
1,697,176	-				-0.9
1,697,242	+		DZA65_RS08100	0.90	+0.0
1,697,243	-		DZA65_RS08100	0.90	+0.7
1,697,278	+				+0.7
1,697,278	+				-0.7
1,697,334	+				-0.3
1,697,334	+				+0.3
1,697,334	+				+0.9
1,697,334	+				+1.0
1,697,334	+				-1.2
1,697,335	-				+1.2
1,697,335	-				-0.8
1,697,335	-				-0.2
1,697,335	-				-1.3
1,697,349	+				+2.2
1,697,349	+				+0.1
1,697,350	-				-0.3
1,697,350	-				-0.8
1,697,350	-				-0.3
1,697,350	-				-1.7
1,697,374	+				-0.3
1,697,375	-				-1.3
1,697,375	-				-0.4
1,697,375	-				-1.3
1,697,375	-				-0.3
1,697,375	-				-1.2
1,697,461	+				-2.2
1,697,461	+				+1.1
1,697,461	+				-0.0
1,697,461	+				+0.7
1,697,461	+				-0.9
1,697,462	-				-1.9
1,697,462	-				+0.7
1,697,462	-				-1.3
1,697,462	-				+0.7
1,697,462	-				+0.7
1,697,462	-				-1.5
1,697,462	-				-0.3
1,697,462	-				-1.7
1,697,462	-				+1.1
1,697,462	-				-2.2
1,697,462	-				-2.0
1,697,464	-				-2.3
1,697,489	-				-0.9
1,697,635	+		DZA65_RS08105	0.15	-0.3
1,697,757	+		DZA65_RS08105	0.22	+1.7
1,697,757	+		DZA65_RS08105	0.22	+0.7
1,697,757	+		DZA65_RS08105	0.22	-1.0
1,697,758	-		DZA65_RS08105	0.22	-0.0
1,697,758	-		DZA65_RS08105	0.22	+0.3
1,697,758	-		DZA65_RS08105	0.22	-1.1
1,697,758	-		DZA65_RS08105	0.22	-1.3
1,697,758	-		DZA65_RS08105	0.22	-1.3
1,697,758	-		DZA65_RS08105	0.22	+0.1
1,697,758	-		DZA65_RS08105	0.22	-0.8
1,697,758	-		DZA65_RS08105	0.22	+0.2
1,697,758	-		DZA65_RS08105	0.22	-1.7
1,697,758	-		DZA65_RS08105	0.22	-2.3
1,697,760	+		DZA65_RS08105	0.22	+0.7
1,697,760	+		DZA65_RS08105	0.22	-1.8
1,697,760	+		DZA65_RS08105	0.22	-0.3
1,697,761	-		DZA65_RS08105	0.22	+0.2
1,697,761	-		DZA65_RS08105	0.22	-2.5
1,697,761	-		DZA65_RS08105	0.22	-0.8
1,697,761	-		DZA65_RS08105	0.22	-0.6
1,697,796	+		DZA65_RS08105	0.24	-0.6
1,697,796	+		DZA65_RS08105	0.24	-1.6
1,697,796	+		DZA65_RS08105	0.24	+0.7
1,697,797	-		DZA65_RS08105	0.24	-0.4
1,697,968	+		DZA65_RS08105	0.32	+0.2
1,697,977	+		DZA65_RS08105	0.33	-0.9
1,698,076	+		DZA65_RS08105	0.38	+1.2
1,698,088	+		DZA65_RS08105	0.39	+0.8
1,698,088	+		DZA65_RS08105	0.39	-1.3
1,698,206	+		DZA65_RS08105	0.45	+0.1
1,698,207	-				-0.3
1,698,207	-		DZA65_RS08105	0.45	-0.3
1,698,207	-		DZA65_RS08105	0.45	-0.5
1,698,322	+		DZA65_RS08105	0.51	+0.7
1,698,323	-				-0.2
1,698,368	-		DZA65_RS08105	0.53	-0.8
1,698,460	+		DZA65_RS08105	0.58	-0.9
1,698,460	+		DZA65_RS08105	0.58	-1.5
1,698,461	-		DZA65_RS08105	0.58	-1.3
1,698,461	-		DZA65_RS08105	0.58	-2.2
1,698,461	-		DZA65_RS08105	0.58	-0.3
1,698,461	-		DZA65_RS08105	0.58	-0.9
1,698,461	-		DZA65_RS08105	0.58	-1.9
1,698,461	-		DZA65_RS08105	0.58	-1.9
1,698,461	-		DZA65_RS08105	0.58	-3.0
1,698,461	-		DZA65_RS08105	0.58	-2.4
1,698,492	+		DZA65_RS08105	0.60	-0.3
1,698,492	+		DZA65_RS08105	0.60	-0.8
1,698,492	+		DZA65_RS08105	0.60	-0.8
1,698,493	-		DZA65_RS08105	0.60	-0.7
1,698,507	+		DZA65_RS08105	0.60	-2.5
1,698,507	+		DZA65_RS08105	0.60	+1.2
1,698,508	-				-2.2
1,698,508	-		DZA65_RS08105	0.60	-0.1
1,698,508	-		DZA65_RS08105	0.60	-1.8
1,698,508	-		DZA65_RS08105	0.60	-2.2
1,698,548	+		DZA65_RS08105	0.62	+0.2
1,698,548	+		DZA65_RS08105	0.62	-0.3
1,698,548	+		DZA65_RS08105	0.62	-1.3
1,698,548	+		DZA65_RS08105	0.62	-0.9
1,698,548	+		DZA65_RS08105	0.62	-1.3
1,698,548	+		DZA65_RS08105	0.62	-1.7
1,698,549	-		DZA65_RS08105	0.63	-0.9
1,698,549	-		DZA65_RS08105	0.63	+0.2
1,698,549	-		DZA65_RS08105	0.63	-1.3
1,698,549	-		DZA65_RS08105	0.63	+0.7
1,698,549	-		DZA65_RS08105	0.63	-0.3
1,698,552	+		DZA65_RS08105	0.63	+0.7
1,698,552	+		DZA65_RS08105	0.63	-0.2
1,698,552	+		DZA65_RS08105	0.63	-0.0
1,698,552	+		DZA65_RS08105	0.63	+0.7
1,698,552	+		DZA65_RS08105	0.63	-0.3
1,698,552	+		DZA65_RS08105	0.63	+1.2
1,698,552	+		DZA65_RS08105	0.63	-1.3
1,698,552	+		DZA65_RS08105	0.63	-1.7
1,698,552	+		DZA65_RS08105	0.63	-0.6
1,698,552	+		DZA65_RS08105	0.63	+2.2
1,698,552	+				+0.3
1,698,552	+		DZA65_RS08105	0.63	-1.3
1,698,552	+		DZA65_RS08105	0.63	+0.5
1,698,552	+		DZA65_RS08105	0.63	+0.9
1,698,552	+				-1.3
1,698,552	+		DZA65_RS08105	0.63	-1.3
1,698,553	-		DZA65_RS08105	0.63	-0.9
1,698,553	-		DZA65_RS08105	0.63	-0.2
1,698,553	-		DZA65_RS08105	0.63	-0.3
1,698,553	-		DZA65_RS08105	0.63	-1.9
1,698,553	-		DZA65_RS08105	0.63	+0.1
1,698,553	-		DZA65_RS08105	0.63	+0.5
1,698,553	-		DZA65_RS08105	0.63	-2.5
1,698,553	-		DZA65_RS08105	0.63	-0.3
1,698,553	-		DZA65_RS08105	0.63	+1.4
1,698,553	-		DZA65_RS08105	0.63	-0.3
1,698,553	-		DZA65_RS08105	0.63	-0.3
1,698,553	-		DZA65_RS08105	0.63	-1.5
1,698,553	-		DZA65_RS08105	0.63	-0.6
1,698,553	-		DZA65_RS08105	0.63	-1.5
1,698,553	-				-0.9
1,698,553	-		DZA65_RS08105	0.63	-2.2
1,698,556	+		DZA65_RS08105	0.63	+0.7
1,698,664	+		DZA65_RS08105	0.68	-0.1
1,698,664	+		DZA65_RS08105	0.68	-0.6
1,698,665	-		DZA65_RS08105	0.69	-1.5
1,698,902	-		DZA65_RS08105	0.81	-3.3
1,698,902	-		DZA65_RS08105	0.81	-0.5
1,698,927	+		DZA65_RS08105	0.82	-1.0
1,698,928	-		DZA65_RS08105	0.82	+0.7
1,698,928	-		DZA65_RS08105	0.82	-0.5
1,698,935	-		DZA65_RS08105	0.83	-1.2
1,699,027	+		DZA65_RS08105	0.87	+0.7
1,699,027	+		DZA65_RS08105	0.87	+0.7
1,699,027	+		DZA65_RS08105	0.87	-1.3
1,699,027	+		DZA65_RS08105	0.87	+1.0
1,699,027	+		DZA65_RS08105	0.87	-1.7
1,699,028	-		DZA65_RS08105	0.87	+0.7
1,699,028	-		DZA65_RS08105	0.87	-3.0
1,699,028	-		DZA65_RS08105	0.87	+1.1
1,699,028	-		DZA65_RS08105	0.87	-1.3
1,699,028	-		DZA65_RS08105	0.87	-1.9
1,699,028	-		DZA65_RS08105	0.87	-1.2
1,699,028	-		DZA65_RS08105	0.87	-2.4
1,699,028	-		DZA65_RS08105	0.87	-1.3
1,699,028	-		DZA65_RS08105	0.87	-0.1
1,699,049	+		DZA65_RS08105	0.88	+0.7
1,699,146	-				-1.7
1,699,209	+				+0.9
1,699,210	-				-1.3
1,699,236	+				+1.1
1,699,237	-				+0.1
1,699,237	-				-0.2
1,699,237	-				+2.7
1,699,255	-				-1.5
1,699,255	-				-0.9
1,699,270	+				-1.7
1,699,270	+				+1.3
1,699,270	+				-0.6
1,699,270	+				-1.9
1,699,271	-				-1.9
1,699,300	+				+1.2
1,699,300	+				+1.9
1,699,300	+				+0.1
1,699,300	+				+0.4
1,699,300	+				-1.1
1,699,300	+				-0.6
1,699,301	-				-1.0
1,699,301	-				-1.0
1,699,301	-				-0.1
1,699,301	-				+0.1
1,699,301	-				-0.9
1,699,329	-				-1.4
1,699,333	+				-0.9
1,699,333	+				-1.3
1,699,333	+				+0.1
1,699,333	+				-0.9
1,699,333	+				-2.2
1,699,334	-				+0.1
1,699,580	+				+0.9
1,699,580	+				-0.0
1,699,580	+				-2.8
1,699,580	+				+0.2
1,699,580	+				-0.2
1,699,581	-				-0.3
1,699,581	-				-1.3
1,699,599	-				-3.0
1,699,618	+				-0.6
1,699,618	+				+0.7
1,699,618	+				+0.1
1,699,618	+				-0.7
1,699,618	+				-0.5
1,699,618	+				+1.3
1,699,618	+				-0.7
1,699,618	+				-1.8
1,699,619	-				-0.9
1,699,619	-				+0.7
1,699,619	-				-0.3
1,699,619	-				-0.3
1,699,619	-				+0.7
1,699,619	-				-1.4
1,699,619	-				+0.2
1,699,634	+				-2.3
1,699,634	+				+0.2
1,699,634	+				-2.2
1,699,635	-				-0.7
1,699,635	-				-0.3
1,699,638	+				-1.3
1,699,671	+				-0.9
1,699,746	+		DZA65_RS08115	0.13	-1.9
1,699,747	-		DZA65_RS08115	0.13	-1.3
1,699,747	-		DZA65_RS08115	0.13	-0.9
1,699,829	+		DZA65_RS08115	0.22	-0.2
1,699,829	+		DZA65_RS08115	0.22	-2.2
1,699,829	+				-1.9
1,699,830	-		DZA65_RS08115	0.22	-1.7
1,699,830	-		DZA65_RS08115	0.22	-1.5
1,699,830	-		DZA65_RS08115	0.22	-1.9
1,699,830	-		DZA65_RS08115	0.22	-1.9
1,699,830	-		DZA65_RS08115	0.22	-1.3
1,699,830	-		DZA65_RS08115	0.22	-0.7
1,699,836	-		DZA65_RS08115	0.23	-1.9
1,699,836	-		DZA65_RS08115	0.23	-0.9
1,700,006	+		DZA65_RS08115	0.42	+0.2
1,700,006	+		DZA65_RS08115	0.42	-2.2
1,700,006	+		DZA65_RS08115	0.42	+0.7
1,700,007	-		DZA65_RS08115	0.42	+0.1
1,700,192	+		DZA65_RS08115	0.62	-0.3
1,700,193	-		DZA65_RS08115	0.62	-2.2
1,700,193	-		DZA65_RS08115	0.62	-0.5
1,700,193	-				+1.2