Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06835

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,417,301	-				+1.4
1,417,390	+				-0.4
1,417,424	+				-0.2
1,417,647	+		DZA65_RS06825	0.21	-1.2
1,417,647	+		DZA65_RS06825	0.21	-0.8
1,417,647	+		DZA65_RS06825	0.21	-0.4
1,417,648	-		DZA65_RS06825	0.21	-1.6
1,417,675	-		DZA65_RS06825	0.28	-2.0
1,417,675	-		DZA65_RS06825	0.28	+0.8
1,417,675	-		DZA65_RS06825	0.28	-2.2
1,417,675	-		DZA65_RS06825	0.28	+0.8
1,417,697	+		DZA65_RS06825	0.33	+0.3
1,417,697	+		DZA65_RS06825	0.33	-1.5
1,417,697	+		DZA65_RS06825	0.33	-1.8
1,417,697	+		DZA65_RS06825	0.33	-0.8
1,417,698	-		DZA65_RS06825	0.34	-0.4
1,417,698	-		DZA65_RS06825	0.34	-0.8
1,417,698	-		DZA65_RS06825	0.34	+0.1
1,417,818	+		DZA65_RS06825	0.64	-0.8
1,417,818	+		DZA65_RS06825	0.64	-2.0
1,417,818	+		DZA65_RS06825	0.64	-1.2
1,417,819	-		DZA65_RS06825	0.65	-1.8
1,417,819	-		DZA65_RS06825	0.65	-0.8
1,417,819	-		DZA65_RS06825	0.65	+0.4
1,417,819	-		DZA65_RS06825	0.65	-3.5
1,417,819	-		DZA65_RS06825	0.65	+0.2
1,417,823	+		DZA65_RS06825	0.66	-0.6
1,417,823	+		DZA65_RS06825	0.66	-1.8
1,417,823	+		DZA65_RS06825	0.66	+0.4
1,417,823	+		DZA65_RS06825	0.66	-0.1
1,417,824	-		DZA65_RS06825	0.66	-0.2
1,417,841	+		DZA65_RS06825	0.70	-0.2
1,417,841	+		DZA65_RS06825	0.70	+0.8
1,417,841	+		DZA65_RS06825	0.70	-2.8
1,417,841	+		DZA65_RS06825	0.70	-1.0
1,417,842	-		DZA65_RS06825	0.71	-2.2
1,417,842	-		DZA65_RS06825	0.71	-0.6
1,417,859	-		DZA65_RS06825	0.75	-0.8
1,417,912	-		DZA65_RS06825	0.88	-1.2
1,417,914	+		DZA65_RS06825	0.89	+0.8
1,417,914	+		DZA65_RS06825	0.89	+0.8
1,417,915	-		DZA65_RS06825	0.89	-1.8
1,417,915	-		DZA65_RS06825	0.89	-2.8
1,417,949	+				-1.5
1,417,950	-				-1.2
1,417,954	+				-1.4
1,417,954	+				+1.8
1,417,955	-				-0.2
1,417,979	+				-1.4
1,417,980	-				-0.2
1,417,980	-				-0.5
1,418,000	-		DZA65_RS06830	0.14	+2.4
1,418,002	+		DZA65_RS06830	0.15	+0.4
1,418,002	+		DZA65_RS06830	0.15	-2.5
1,418,034	+		DZA65_RS06830	0.24	-0.4
1,418,034	+		DZA65_RS06830	0.24	-0.9
1,418,034	+		DZA65_RS06830	0.24	-1.7
1,418,034	+		DZA65_RS06830	0.24	-2.5
1,418,034	+		DZA65_RS06830	0.24	-1.8
1,418,035	-		DZA65_RS06830	0.24	-1.5
1,418,035	-		DZA65_RS06830	0.24	+0.1
1,418,035	-		DZA65_RS06830	0.24	+1.8
1,418,043	+		DZA65_RS06830	0.27	-1.1
1,418,043	+		DZA65_RS06830	0.27	-2.7
1,418,043	+		DZA65_RS06830	0.27	-0.2
1,418,043	+		DZA65_RS06830	0.27	-1.2
1,418,043	+		DZA65_RS06830	0.27	-2.3
1,418,043	+		DZA65_RS06830	0.27	-1.2
1,418,043	+				-2.2
1,418,044	-		DZA65_RS06830	0.27	-1.2
1,418,044	-		DZA65_RS06830	0.27	+0.8
1,418,044	-		DZA65_RS06830	0.27	-2.5
1,418,044	-				-0.4
1,418,046	-		DZA65_RS06830	0.28	-1.2
1,418,118	-		DZA65_RS06830	0.48	+0.8
1,418,196	+		DZA65_RS06830	0.71	-1.5
1,418,196	+		DZA65_RS06830	0.71	-0.1
1,418,196	+				-1.8
1,418,251	+		DZA65_RS06830	0.86	-1.8
1,418,252	-		DZA65_RS06830	0.87	-0.1
1,418,259	+		DZA65_RS06830	0.89	-1.0
1,418,259	+		DZA65_RS06830	0.89	+1.2
1,418,259	+		DZA65_RS06830	0.89	-1.2
1,418,260	-		DZA65_RS06830	0.89	-1.7
1,418,485	+		DZA65_RS06835	0.11	-1.1
1,418,486	-		DZA65_RS06835	0.11	+0.2
1,418,486	-		DZA65_RS06835	0.11	-0.1
1,418,504	+		DZA65_RS06835	0.12	+0.4
1,418,504	+		DZA65_RS06835	0.12	-1.5
1,418,504	+		DZA65_RS06835	0.12	+0.8
1,418,504	+		DZA65_RS06835	0.12	-2.4
1,418,504	+		DZA65_RS06835	0.12	-1.4
1,418,505	-		DZA65_RS06835	0.12	-0.2
1,418,505	-		DZA65_RS06835	0.12	-1.2
1,418,505	-		DZA65_RS06835	0.12	-0.8
1,418,505	-		DZA65_RS06835	0.12	-2.4
1,418,505	-		DZA65_RS06835	0.12	-0.4
1,418,528	+		DZA65_RS06835	0.13	-1.8
1,418,529	-		DZA65_RS06835	0.13	-0.0
1,418,555	+		DZA65_RS06835	0.15	-1.3
1,418,555	+		DZA65_RS06835	0.15	-0.5
1,418,555	+		DZA65_RS06835	0.15	-1.1
1,418,555	+		DZA65_RS06835	0.15	-1.6
1,418,555	+		DZA65_RS06835	0.15	-1.7
1,418,555	+		DZA65_RS06835	0.15	-1.2
1,418,556	-		DZA65_RS06835	0.15	-2.4
1,418,556	-		DZA65_RS06835	0.15	-0.8
1,418,556	-		DZA65_RS06835	0.15	-1.4
1,418,556	-		DZA65_RS06835	0.15	-1.0
1,418,557	+		DZA65_RS06835	0.15	-0.2
1,418,558	-		DZA65_RS06835	0.15	-2.5
1,418,639	+		DZA65_RS06835	0.19	-0.8
1,418,640	-		DZA65_RS06835	0.19	-2.2
1,418,745	-		DZA65_RS06835	0.25	+0.8
1,418,789	+		DZA65_RS06835	0.28	+0.2
1,418,790	-		DZA65_RS06835	0.28	+1.8
1,418,790	-		DZA65_RS06835	0.28	-1.4
1,418,917	+		DZA65_RS06835	0.35	+2.6
1,418,918	-		DZA65_RS06835	0.35	-3.2
1,418,918	-		DZA65_RS06835	0.35	-2.4
1,418,921	+		DZA65_RS06835	0.35	-2.0
1,418,921	+		DZA65_RS06835	0.35	+0.0
1,418,921	+		DZA65_RS06835	0.35	-1.2
1,418,922	-		DZA65_RS06835	0.35	-1.5
1,418,922	-		DZA65_RS06835	0.35	-3.0
1,419,159	+		DZA65_RS06835	0.49	+0.8
1,419,159	+		DZA65_RS06835	0.49	-1.7
1,419,160	-				-0.5
1,419,315	+		DZA65_RS06835	0.58	+0.5
1,419,316	-		DZA65_RS06835	0.58	-1.8
1,419,359	+		DZA65_RS06835	0.60	-1.5
1,419,359	+		DZA65_RS06835	0.60	-1.4
1,419,799	+		DZA65_RS06835	0.85	-1.7
1,419,799	+		DZA65_RS06835	0.85	-0.3
1,419,971	+				-1.3
1,420,058	+				-1.8
1,420,059	-				+1.8
1,420,061	+				-0.1
1,420,062	-				-1.2
1,420,077	+				+0.9
1,420,077	+				-1.1
1,420,078	-				+1.8
1,420,078	-				-1.0
1,420,125	+				-0.6
1,420,164	+				-3.9
1,420,164	+				-0.2
1,420,164	+				-1.0
1,420,164	+				-0.5
1,420,165	-				-2.4
1,420,165	-				+0.2
1,420,165	-				-2.0
1,420,166	+				-0.8
1,420,304	+		DZA65_RS06840	0.29	-3.5
1,420,304	+		DZA65_RS06840	0.29	-0.9
1,420,322	+		DZA65_RS06840	0.31	-1.5
1,420,322	+		DZA65_RS06840	0.31	+0.8
1,420,323	-		DZA65_RS06840	0.31	-1.0
1,420,325	+		DZA65_RS06840	0.32	-0.4
1,420,326	-		DZA65_RS06840	0.32	-0.2
1,420,326	-		DZA65_RS06840	0.32	-1.5
1,420,428	+		DZA65_RS06840	0.46	-0.2
1,420,547	+		DZA65_RS06840	0.63	+0.4
1,420,547	+		DZA65_RS06840	0.63	-1.8
1,420,547	+		DZA65_RS06840	0.63	-2.0
1,420,547	+		DZA65_RS06840	0.63	-1.8
1,420,548	-		DZA65_RS06840	0.63	-2.8
1,420,548	-		DZA65_RS06840	0.63	-1.9
1,420,548	-		DZA65_RS06840	0.63	+0.8
1,420,548	-		DZA65_RS06840	0.63	-2.9
1,420,548	-		DZA65_RS06840	0.63	-4.3
1,420,548	-		DZA65_RS06840	0.63	-1.7
1,420,706	-		DZA65_RS06840	0.85	-1.8
1,420,782	-				+1.8
1,420,805	+				-2.4
1,420,829	+				+0.1
1,420,829	+				-2.9
1,420,829	+				+0.4
1,420,829	+				+0.5
1,420,830	-				+0.4
1,420,830	-				+0.5
1,420,888	+				+0.4
1,420,925	+				-0.8
1,420,989	+				-2.2
1,421,002	+				+0.3
1,421,002	+				-2.3
1,421,002	+				+0.5
1,421,002	+				-2.5
1,421,002	+				-2.7
1,421,002	+				-1.1
1,421,005	+				-0.8
1,421,005	+				-1.0
1,421,005	+				-1.4
1,421,005	+				-0.5
1,421,005	+				-0.2
1,421,005	+				-1.2
1,421,005	+				-1.0
1,421,005	+				+1.0
1,421,005	+				-1.7
1,421,005	+				-0.8
1,421,005	+				-1.2
1,421,005	+				+0.8
1,421,005	+				-0.8
1,421,005	+				+0.8
1,421,005	+				+0.2
1,421,005	+				-1.5
1,421,005	+				+0.8