Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06040

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Atlantic
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1,247,011	+	DZA65_RS06030	0.82	+0.4
1,247,011	+	DZA65_RS06030	0.82	+1.7
1,247,183	+			+1.2
1,247,183	+			-0.4
1,247,307	+			-1.6
1,247,307	+			-1.5
1,247,308	-			+0.3
1,247,308	-			-3.7
1,247,326	+			+0.6
1,247,327	-			-1.1
1,247,327	-			+0.7
1,247,327	-			+0.6
1,247,354	-			-1.1
1,247,354	-			+0.9
1,247,431	-			+0.9
1,247,431	-			+0.5
1,247,431	-			-2.6
1,247,431	-			-0.8
1,247,431	-			-0.7
1,247,519	+			+0.4
1,247,520	-			-0.4
1,247,520	-			+1.0
1,247,553	-	DZA65_RS06035	0.16	-0.5
1,247,685	+	DZA65_RS06035	0.51	+0.7
1,247,685	+	DZA65_RS06035	0.51	+0.4
1,247,686	-	DZA65_RS06035	0.51	+0.4
1,247,688	+	DZA65_RS06035	0.52	-2.0
1,247,688	+	DZA65_RS06035	0.52	+2.0
1,247,688	+	DZA65_RS06035	0.52	+2.4
1,247,688	+	DZA65_RS06035	0.52	+1.4
1,247,688	+	DZA65_RS06035	0.52	-0.1
1,247,688	+	DZA65_RS06035	0.52	-0.4
1,247,689	-	DZA65_RS06035	0.52	-1.1
1,247,689	-	DZA65_RS06035	0.52	-0.7
1,247,689	-	DZA65_RS06035	0.52	+0.9
1,247,689	-	DZA65_RS06035	0.52	-0.1
1,247,689	-	DZA65_RS06035	0.52	+1.4
1,247,689	-	DZA65_RS06035	0.52	+1.2
1,247,692	-	DZA65_RS06035	0.53	+0.9
1,247,765	-	DZA65_RS06035	0.72	+0.9
1,247,894	+			-4.0
1,247,894	+			+0.6
1,247,895	-			-0.1
1,248,005	-			-3.0
1,248,039	-			-1.0
1,248,123	+	DZA65_RS06040	0.21	-0.8
1,248,152	+	DZA65_RS06040	0.25	-0.1
1,248,153	-	DZA65_RS06040	0.25	-0.1
1,248,153	-	DZA65_RS06040	0.25	-1.7
1,248,153	-	DZA65_RS06040	0.25	-1.7
1,248,153	-	DZA65_RS06040	0.25	-0.7
1,248,155	+	DZA65_RS06040	0.25	+0.2
1,248,155	+	DZA65_RS06040	0.25	-0.0
1,248,156	-	DZA65_RS06040	0.25	-1.5
1,248,156	-	DZA65_RS06040	0.25	-1.5
1,248,316	-	DZA65_RS06040	0.48	-2.1
1,248,334	+	DZA65_RS06040	0.51	+0.9
1,248,334	+	DZA65_RS06040	0.51	-0.7
1,248,347	+	DZA65_RS06040	0.53	+0.4
1,248,348	-	DZA65_RS06040	0.53	-2.0
1,248,348	-	DZA65_RS06040	0.53	-1.8
1,248,348	-	DZA65_RS06040	0.53	+1.9
1,248,375	+	DZA65_RS06040	0.57	-0.4
1,248,573	-	DZA65_RS06040	0.85	-0.5
1,248,576	+			-1.5
1,248,576	+	DZA65_RS06040	0.86	-0.7
1,248,576	+	DZA65_RS06040	0.86	+0.4
1,248,577	-	DZA65_RS06040	0.86	-0.5
1,248,577	-	DZA65_RS06040	0.86	-0.3
1,248,603	-	DZA65_RS06040	0.90	-2.3
1,248,659	-			-0.5
1,248,659	-			-2.5
1,248,729	+			+1.9
1,248,729	+			+0.2
1,248,729	+			-0.7
1,248,730	-			+0.9
1,248,730	-			+0.9
1,248,738	+			+1.4
1,248,738	+			+0.9
1,248,739	-			-1.1
1,248,743	+			+0.3
1,248,744	-			-0.0
1,248,744	-			-1.1
1,248,795	-			+1.1
1,248,847	-			+3.2
1,248,881	+			-0.3
1,248,881	+			-0.7
1,248,881	+			-0.2
1,248,881	+			+0.4
1,248,881	+			+0.7
1,248,882	-			-0.7
1,248,882	-			-1.3
1,248,882	-			+0.1
1,248,882	-			-2.0
1,248,882	-			+1.9
1,248,882	-			-0.5
1,248,882	-			-0.7
1,248,882	-			+1.4
1,248,882	-			-0.1
1,248,884	+			+0.3
1,248,884	+			-0.1
1,248,884	+			-0.0
1,248,884	+			-0.1
1,248,884	+			-0.1
1,248,884	+			-2.3
1,248,885	-			+0.9
1,248,885	-			-1.5
1,248,885	-			-1.6
1,248,885	-			-3.1
1,248,897	-			+0.1
1,249,048	-	DZA65_RS06045	0.24	+0.6
1,249,069	+	DZA65_RS06045	0.26	+3.0
1,249,069	+	DZA65_RS06045	0.26	-0.7
1,249,167	+	DZA65_RS06045	0.35	-1.2
1,249,167	+	DZA65_RS06045	0.35	+0.7
1,249,167	+	DZA65_RS06045	0.35	+1.4
1,249,184	+	DZA65_RS06045	0.37	-1.1
1,249,193	+	DZA65_RS06045	0.37	-0.4
1,249,193	+	DZA65_RS06045	0.37	-1.5
1,249,194	-	DZA65_RS06045	0.38	-0.7
1,249,194	-	DZA65_RS06045	0.38	+1.4
1,249,194	-	DZA65_RS06045	0.38	+0.4
1,249,194	-	DZA65_RS06045	0.38	-1.1
1,249,194	-	DZA65_RS06045	0.38	+0.0
1,249,247	+	DZA65_RS06045	0.43	+0.0
1,249,256	+	DZA65_RS06045	0.43	-1.5
1,249,256	+	DZA65_RS06045	0.43	-2.7
1,249,257	-	DZA65_RS06045	0.43	+1.3
1,249,307	+	DZA65_RS06045	0.48	-1.5
1,249,307	+	DZA65_RS06045	0.48	-0.4
1,249,307	+	DZA65_RS06045	0.48	+1.0
1,249,308	-	DZA65_RS06045	0.48	-0.6
1,249,308	-	DZA65_RS06045	0.48	+0.9
1,249,346	+	DZA65_RS06045	0.52	+0.9
1,249,346	+	DZA65_RS06045	0.52	-0.7
1,249,346	+	DZA65_RS06045	0.52	+0.1
1,249,368	+	DZA65_RS06045	0.54	-0.5
1,249,369	-	DZA65_RS06045	0.54	-1.3
1,249,400	+	DZA65_RS06045	0.57	-1.5
1,249,400	+	DZA65_RS06045	0.57	-2.0
1,249,401	-	DZA65_RS06045	0.57	+2.4
1,249,401	-	DZA65_RS06045	0.57	+0.6
1,249,418	+	DZA65_RS06045	0.59	-1.5
1,249,418	+	DZA65_RS06045	0.59	+1.1
1,249,418	+	DZA65_RS06045	0.59	+1.1
1,249,418	+			-1.1
1,249,418	+	DZA65_RS06045	0.59	+0.3
1,249,418	+	DZA65_RS06045	0.59	-0.1
1,249,418	+	DZA65_RS06045	0.59	-0.3
1,249,418	+	DZA65_RS06045	0.59	-0.1
1,249,418	+	DZA65_RS06045	0.59	+0.0
1,249,419	-	DZA65_RS06045	0.59	-2.3
1,249,419	-	DZA65_RS06045	0.59	-0.1
1,249,419	-	DZA65_RS06045	0.59	-1.1
1,249,419	-	DZA65_RS06045	0.59	-2.1
1,249,419	-	DZA65_RS06045	0.59	+1.6
1,249,419	-	DZA65_RS06045	0.59	+0.9
1,249,460	+	DZA65_RS06045	0.63	-1.1
1,249,460	+	DZA65_RS06045	0.63	+0.4
1,249,460	+	DZA65_RS06045	0.63	+0.4
1,249,460	+	DZA65_RS06045	0.63	+0.4
1,249,460	+	DZA65_RS06045	0.63	-0.7
1,249,460	+	DZA65_RS06045	0.63	-0.7
1,249,460	+	DZA65_RS06045	0.63	+0.6
1,249,461	-	DZA65_RS06045	0.63	-1.7
1,249,461	-	DZA65_RS06045	0.63	-0.3
1,249,461	-	DZA65_RS06045	0.63	+0.9
1,249,461	-	DZA65_RS06045	0.63	+1.4
1,249,461	-	DZA65_RS06045	0.63	+0.9
1,249,461	-	DZA65_RS06045	0.63	-0.7
1,249,461	-	DZA65_RS06045	0.63	+0.6
1,249,503	-	DZA65_RS06045	0.67	+0.1
1,249,503	-	DZA65_RS06045	0.67	-2.3
1,249,503	-	DZA65_RS06045	0.67	-0.4
1,249,536	+	DZA65_RS06045	0.70	-0.7
1,249,536	+	DZA65_RS06045	0.70	+0.4
1,249,536	+	DZA65_RS06045	0.70	-1.0
1,249,558	-	DZA65_RS06045	0.72	-0.9
1,249,558	-	DZA65_RS06045	0.72	+1.4
1,249,605	+	DZA65_RS06045	0.77	+0.5
1,249,668	-	DZA65_RS06045	0.83	-0.7

Or see this region's nucleotide sequence