Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05960

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
1,227,711	+		DZA65_RS05950	0.77	+0.4
1,227,800	+		DZA65_RS05950	0.85	+2.0
1,227,811	+		DZA65_RS05950	0.86	+0.3
1,227,812	-		DZA65_RS05950	0.86	+2.6
1,227,812	-		DZA65_RS05950	0.86	-0.2
1,227,812	-		DZA65_RS05950	0.86	-0.2
1,227,838	+		DZA65_RS05950	0.88	-0.3
1,227,839	-		DZA65_RS05950	0.88	+1.3
1,227,877	+				+1.3
1,227,877	+				+1.8
1,227,877	+				+0.4
1,227,877	+				+1.2
1,227,877	+				-1.7
1,227,877	+				+0.4
1,227,878	-				-0.5
1,227,878	-				+1.1
1,227,878	-				+0.4
1,227,978	+				+0.1
1,227,978	+				+0.5
1,227,979	-				+0.1
1,228,009	+				-0.0
1,228,009	+				+2.8
1,228,009	+				-2.3
1,228,009	+				-2.0
1,228,009	+				-0.2
1,228,010	-				-0.5
1,228,010	-				-3.2
1,228,010	-				+0.7
1,228,014	+				-1.2
1,228,056	+				+2.3
1,228,056	+				+1.2
1,228,079	+				-0.2
1,228,079	+				+0.6
1,228,079	+				+0.5
1,228,080	-				-0.7
1,228,080	-				-0.0
1,228,097	+				+0.8
1,228,097	+				-0.2
1,228,232	-		DZA65_RS05955	0.32	-0.2
1,228,233	+		DZA65_RS05955	0.32	-0.7
1,228,233	+		DZA65_RS05955	0.32	+3.7
1,228,234	-		DZA65_RS05955	0.33	-0.0
1,228,244	+		DZA65_RS05955	0.35	+0.8
1,228,245	-		DZA65_RS05955	0.35	+0.3
1,228,245	-		DZA65_RS05955	0.35	-0.4
1,228,245	-		DZA65_RS05955	0.35	-1.7
1,228,276	+		DZA65_RS05955	0.41	-0.8
1,228,276	+		DZA65_RS05955	0.41	-2.2
1,228,276	+		DZA65_RS05955	0.41	+1.1
1,228,276	+		DZA65_RS05955	0.41	-0.5
1,228,276	+		DZA65_RS05955	0.41	+0.3
1,228,276	+		DZA65_RS05955	0.41	-1.7
1,228,277	-		DZA65_RS05955	0.41	+1.8
1,228,302	+				+0.4
1,228,302	+		DZA65_RS05955	0.46	-2.0
1,228,302	+		DZA65_RS05955	0.46	-0.5
1,228,302	+		DZA65_RS05955	0.46	-0.7
1,228,302	+		DZA65_RS05955	0.46	-0.4
1,228,303	-		DZA65_RS05955	0.46	-0.9
1,228,303	-		DZA65_RS05955	0.46	-0.4
1,228,355	+				-1.7
1,228,355	+		DZA65_RS05955	0.57	-1.2
1,228,355	+		DZA65_RS05955	0.57	-1.2
1,228,355	+		DZA65_RS05955	0.57	-0.7
1,228,355	+		DZA65_RS05955	0.57	-0.0
1,228,355	+		DZA65_RS05955	0.57	-1.5
1,228,355	+		DZA65_RS05955	0.57	+0.6
1,228,355	+		DZA65_RS05955	0.57	-0.2
1,228,355	+		DZA65_RS05955	0.57	-1.6
1,228,356	-		DZA65_RS05955	0.57	+0.8
1,228,356	-		DZA65_RS05955	0.57	-0.2
1,228,356	-		DZA65_RS05955	0.57	-0.2
1,228,386	+		DZA65_RS05955	0.63	-0.6
1,228,386	+		DZA65_RS05955	0.63	+1.0
1,228,386	+		DZA65_RS05955	0.63	+0.2
1,228,386	+		DZA65_RS05955	0.63	+0.8
1,228,386	+		DZA65_RS05955	0.63	-1.2
1,228,386	+		DZA65_RS05955	0.63	+1.8
1,228,386	+		DZA65_RS05955	0.63	+1.1
1,228,386	+		DZA65_RS05955	0.63	+0.0
1,228,387	-		DZA65_RS05955	0.63	-1.5
1,228,387	-		DZA65_RS05955	0.63	+0.0
1,228,387	-		DZA65_RS05955	0.63	-1.2
1,228,387	-		DZA65_RS05955	0.63	-0.5
1,228,387	-		DZA65_RS05955	0.63	+1.8
1,228,387	-		DZA65_RS05955	0.63	+0.5
1,228,420	+		DZA65_RS05955	0.70	-0.7
1,228,421	-		DZA65_RS05955	0.70	-1.0
1,228,497	+		DZA65_RS05955	0.85	-0.7
1,228,497	+		DZA65_RS05955	0.85	+0.4
1,228,502	+		DZA65_RS05955	0.86	-1.2
1,228,502	+		DZA65_RS05955	0.86	-0.3
1,228,502	+		DZA65_RS05955	0.86	+0.3
1,228,503	-		DZA65_RS05955	0.87	-1.5
1,228,503	-		DZA65_RS05955	0.87	-0.3
1,228,503	-		DZA65_RS05955	0.87	-0.5
1,228,503	-		DZA65_RS05955	0.87	+0.3
1,228,532	+				+0.7
1,228,552	-				-0.2
1,228,552	-				+0.4
1,228,742	+		DZA65_RS05960	0.10	+0.4
1,228,770	-		DZA65_RS05960	0.12	+2.2
1,228,939	+		DZA65_RS05960	0.24	+1.3
1,228,940	-		DZA65_RS05960	0.25	+2.0
1,228,940	-		DZA65_RS05960	0.25	+0.0
1,228,963	+		DZA65_RS05960	0.26	-0.7
1,228,964	-		DZA65_RS05960	0.26	-0.9
1,229,048	+		DZA65_RS05960	0.32	-3.2
1,229,048	+		DZA65_RS05960	0.32	-2.3
1,229,049	-		DZA65_RS05960	0.33	-0.2
1,229,049	-		DZA65_RS05960	0.33	-0.9
1,229,052	+		DZA65_RS05960	0.33	-0.5
1,229,052	+		DZA65_RS05960	0.33	-0.5
1,229,052	+		DZA65_RS05960	0.33	-0.9
1,229,052	+		DZA65_RS05960	0.33	-0.6
1,229,052	+		DZA65_RS05960	0.33	+0.3
1,229,052	+		DZA65_RS05960	0.33	-3.0
1,229,052	+		DZA65_RS05960	0.33	+2.4
1,229,053	-		DZA65_RS05960	0.33	-3.0
1,229,053	-		DZA65_RS05960	0.33	-0.6
1,229,126	+		DZA65_RS05960	0.38	-2.2
1,229,126	+		DZA65_RS05960	0.38	+0.8
1,229,126	+		DZA65_RS05960	0.38	-0.2
1,229,130	+		DZA65_RS05960	0.38	-1.2
1,229,130	+		DZA65_RS05960	0.38	-1.7
1,229,162	-		DZA65_RS05960	0.41	-0.2
1,229,162	-		DZA65_RS05960	0.41	+0.8
1,229,212	+		DZA65_RS05960	0.44	-0.5
1,229,266	-		DZA65_RS05960	0.48	-0.2
1,229,426	+		DZA65_RS05960	0.60	-0.7
1,229,511	+		DZA65_RS05960	0.66	-1.6
1,229,511	+		DZA65_RS05960	0.66	-2.3
1,229,512	-		DZA65_RS05960	0.66	-0.9
1,229,531	+		DZA65_RS05960	0.68	-0.9
1,229,532	-		DZA65_RS05960	0.68	-1.2
1,229,532	-		DZA65_RS05960	0.68	-1.7
1,229,657	+		DZA65_RS05960	0.77	+0.5
1,229,709	+		DZA65_RS05960	0.81	+0.3
1,229,801	-		DZA65_RS05960	0.88	+0.8
1,229,801	-		DZA65_RS05960	0.88	-0.7
1,229,857	+				-0.2
1,229,858	-				-0.2
1,229,897	+				+2.4
1,229,898	-				-0.3
1,229,960	+				-0.2
1,229,974	-				-0.7
1,229,974	-				-1.6
1,229,974	-				+1.5
1,229,974	-				+0.1
1,229,996	+				+0.3
1,229,996	+				+0.6
1,229,996	+				+1.2
1,229,997	-				-0.2
1,229,997	-				+1.8
1,229,997	-				-0.9
1,230,001	+				-2.9
1,230,001	+				+0.2
1,230,001	+				-0.3
1,230,001	+				+0.5
1,230,002	-				-1.5
1,230,002	-				+0.4
1,230,043	+				-1.2
1,230,043	+				-0.0
1,230,044	-				+0.8
1,230,100	-				+0.8
1,230,100	-				+0.8
1,230,100	-				-0.2
1,230,107	+				+0.6
1,230,107	+				-0.6
1,230,107	+				+0.1
1,230,107	+				-1.2
1,230,107	+				-0.4
1,230,107	+				+0.6
1,230,107	+				-0.6
1,230,108	-				+0.8
1,230,108	-				+0.3
1,230,108	-				-0.7
1,230,108	-				-1.5
1,230,108	-				-0.3
1,230,108	-				-1.4
1,230,108	-				+1.2
1,230,108	-				-1.5
1,230,108	-				-0.7
1,230,108	-				-0.5
1,230,108	-				+1.0
1,230,108	-				+1.0
1,230,108	-				+0.8
1,230,108	-				-0.7
1,230,108	-				+0.2
1,230,108	-				+0.4
1,230,128	+				+0.5
1,230,128	+				-0.2
1,230,129	-				+0.6
1,230,129	-				+0.1
1,230,129	-				-1.5
1,230,129	-				-1.5
1,230,129	-				-0.2
1,230,314	+		DZA65_RS05965	0.22	-1.7
1,230,315	-		DZA65_RS05965	0.22	-2.7
1,230,377	+		DZA65_RS05965	0.29	+0.6
1,230,377	+		DZA65_RS05965	0.29	-1.6
1,230,378	-		DZA65_RS05965	0.29	-3.2
1,230,378	-		DZA65_RS05965	0.29	-1.7
1,230,378	-		DZA65_RS05965	0.29	-1.2
1,230,384	+		DZA65_RS05965	0.30	+0.4
1,230,387	+		DZA65_RS05965	0.30	-1.5
1,230,449	+		DZA65_RS05965	0.37	-0.5
1,230,632	+		DZA65_RS05965	0.58	+0.8
1,230,707	+		DZA65_RS05965	0.66	-0.7
1,230,708	-		DZA65_RS05965	0.66	-1.5
1,230,708	-		DZA65_RS05965	0.66	-0.7
1,230,708	-		DZA65_RS05965	0.66	-0.2
1,230,747	-		DZA65_RS05965	0.71	-0.7
1,230,898	+		DZA65_RS05965	0.88	+1.7