Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04235 and DZA65_RS04240 are separated by 83 nucleotides DZA65_RS04240 and DZA65_RS04250 are separated by 172 nucleotides
DZA65_RS04235: DZA65_RS04235 - DNA repair protein RecN, at 883,126 to 884,787
_RS04235
DZA65_RS04240: DZA65_RS04240 - NAD(+) kinase, at 884,871 to 885,749
_RS04240
DZA65_RS04250: DZA65_RS04250 - nucleotide exchange factor GrpE, at 885,922 to 886,509
_RS04250
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.892 kb on + strand, within DZA65_RS04235 at 883.892 kb on + strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.917 kb on + strand, within DZA65_RS04235 at 883.918 kb on - strand, within DZA65_RS04235 at 883.918 kb on - strand, within DZA65_RS04235 at 883.928 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.169 kb on - strand, within DZA65_RS04235 at 884.214 kb on - strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.377 kb on + strand, within DZA65_RS04235 at 884.377 kb on + strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.571 kb on + strand, within DZA65_RS04235 at 884.571 kb on + strand, within DZA65_RS04235 at 884.572 kb on - strand, within DZA65_RS04235 at 884.572 kb on - strand, within DZA65_RS04235 at 884.673 kb on + strand at 884.673 kb on + strand at 884.673 kb on + strand at 884.673 kb on + strand at 884.674 kb on - strand at 884.674 kb on - strand at 884.674 kb on - strand at 884.763 kb on + strand at 884.764 kb on - strand at 884.790 kb on + strand at 884.790 kb on + strand at 884.791 kb on - strand at 884.800 kb on + strand at 884.800 kb on + strand at 884.801 kb on - strand at 884.801 kb on - strand at 884.811 kb on - strand at 884.811 kb on - strand at 884.820 kb on + strand at 884.821 kb on - strand at 884.824 kb on + strand at 884.825 kb on - strand at 884.829 kb on + strand at 884.831 kb on + strand at 884.847 kb on - strand at 884.866 kb on + strand at 884.866 kb on + strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.817 kb on + strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.876 kb on + strand at 885.888 kb on + strand at 886.507 kb on + strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.614 kb on - strand at 886.631 kb on + strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.691 kb on + strand at 886.692 kb on - strand at 886.692 kb on - strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.710 kb on - strand at 886.713 kb on + strand at 886.714 kb on - strand at 886.721 kb on + strand at 886.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 883,892 + DZA65_RS04235 0.46 +0.3 883,892 + DZA65_RS04235 0.46 -0.8 883,893 - DZA65_RS04235 0.46 +0.2 883,893 - DZA65_RS04235 0.46 -0.1 883,893 - DZA65_RS04235 0.46 -0.1 883,893 - DZA65_RS04235 0.46 -0.1 883,893 - DZA65_RS04235 0.46 +0.2 883,917 + DZA65_RS04235 0.48 +0.5 883,918 - DZA65_RS04235 0.48 -1.1 883,918 - DZA65_RS04235 0.48 -1.9 883,928 + DZA65_RS04235 0.48 +0.8 884,147 + DZA65_RS04235 0.61 +0.0 884,147 + DZA65_RS04235 0.61 +0.7 884,147 + DZA65_RS04235 0.61 -0.7 884,147 + DZA65_RS04235 0.61 -0.3 884,147 + DZA65_RS04235 0.61 +0.9 884,148 - DZA65_RS04235 0.61 +0.5 884,148 - DZA65_RS04235 0.61 +1.5 884,148 - DZA65_RS04235 0.61 -0.7 884,148 - DZA65_RS04235 0.61 +1.1 884,148 - DZA65_RS04235 0.61 +0.6 884,148 - DZA65_RS04235 0.61 -2.9 884,148 - DZA65_RS04235 0.61 +0.1 884,169 - DZA65_RS04235 0.63 -0.1 884,214 - DZA65_RS04235 0.65 -0.8 884,323 + DZA65_RS04235 0.72 -1.3 884,323 + DZA65_RS04235 0.72 -0.3 884,323 + DZA65_RS04235 0.72 +0.9 884,323 + DZA65_RS04235 0.72 +0.3 884,324 - DZA65_RS04235 0.72 -0.7 884,324 - DZA65_RS04235 0.72 -0.4 884,324 - DZA65_RS04235 0.72 -1.9 884,324 - DZA65_RS04235 0.72 +0.4 884,324 - -1.4 884,324 - DZA65_RS04235 0.72 -0.1 884,324 - DZA65_RS04235 0.72 +0.9 884,377 + DZA65_RS04235 0.75 -0.3 884,377 + DZA65_RS04235 0.75 -1.2 884,378 - DZA65_RS04235 0.75 -0.6 884,378 - DZA65_RS04235 0.75 +0.5 884,378 - DZA65_RS04235 0.75 -1.5 884,571 + DZA65_RS04235 0.87 +1.2 884,571 + DZA65_RS04235 0.87 -1.8 884,572 - DZA65_RS04235 0.87 +0.9 884,572 - DZA65_RS04235 0.87 -0.1 884,673 + -1.9 884,673 + +0.1 884,673 + +0.2 884,673 + -0.1 884,674 - -1.7 884,674 - -2.1 884,674 - -1.1 884,763 + -0.3 884,764 - +0.5 884,790 + +0.2 884,790 + -1.3 884,791 - -0.1 884,800 + +0.9 884,800 + -2.1 884,801 - -0.7 884,801 - +0.3 884,811 - -1.4 884,811 - -0.4 884,820 + +0.5 884,821 - +0.6 884,824 + +0.9 884,825 - -1.8 884,829 + -0.7 884,831 + +0.1 884,847 - +1.8 884,866 + +2.1 884,866 + +1.6 885,761 - -2.6 885,761 - -1.7 885,761 - -0.5 885,761 - -1.9 885,761 - +1.1 885,761 - +0.0 885,761 - -2.4 885,761 - +0.2 885,761 - -1.6 885,761 - -1.1 885,817 + -1.1 885,818 - +0.5 885,818 - -1.8 885,818 - +0.2 885,818 - +2.5 885,818 - -0.4 885,818 - +0.9 885,818 - -1.4 885,818 - -0.5 885,818 - -0.9 885,876 + +0.2 885,888 + -1.4 886,507 + -1.0 886,508 - +0.2 886,508 - -1.7 886,508 - +1.2 886,614 - -0.7 886,631 + -1.1 886,632 - -1.4 886,632 - -0.4 886,632 - -1.1 886,632 - +0.0 886,691 + +1.2 886,692 - +1.2 886,692 - -0.9 886,695 + -0.7 886,695 + -0.7 886,695 + -0.1 886,696 - +0.3 886,696 - +0.7 886,696 - -1.7 886,696 - +0.1 886,696 - -1.1 886,696 - +0.3 886,709 + +0.4 886,709 + +0.3 886,710 - -0.9 886,713 + -0.1 886,714 - -0.1 886,721 + -0.7 886,722 - -0.7
Or see this region's nucleotide sequence