Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03855 and DZA65_RS03860 are separated by 26 nucleotides DZA65_RS03860 and DZA65_RS03865 are separated by 528 nucleotides
DZA65_RS03855: DZA65_RS03855 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 816,492 to 818,003
_RS03855
DZA65_RS03860: DZA65_RS03860 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 818,030 to 819,961
_RS03860
DZA65_RS03865: DZA65_RS03865 - inositol 2-dehydrogenase, at 820,490 to 821,476
_RS03865
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.084 kb on + strand, within DZA65_RS03855 at 817.084 kb on + strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.089 kb on - strand, within DZA65_RS03855 at 817.089 kb on - strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.258 kb on + strand, within DZA65_RS03855 at 817.259 kb on - strand, within DZA65_RS03855 at 817.496 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand at 817.503 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand, within DZA65_RS03855 at 817.504 kb on - strand, within DZA65_RS03855 at 817.504 kb on - strand, within DZA65_RS03855 at 817.505 kb on + strand, within DZA65_RS03855 at 817.505 kb on + strand, within DZA65_RS03855 at 817.506 kb on - strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.722 kb on + strand, within DZA65_RS03855 at 817.741 kb on + strand, within DZA65_RS03855 at 817.809 kb on - strand, within DZA65_RS03855 at 817.809 kb on - strand, within DZA65_RS03855 at 817.887 kb on + strand at 817.888 kb on - strand at 817.888 kb on - strand at 817.888 kb on - strand at 817.911 kb on + strand at 817.912 kb on - strand at 817.977 kb on - strand at 818.001 kb on + strand at 818.001 kb on + strand at 818.001 kb on + strand at 818.002 kb on - strand at 818.002 kb on - strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.282 kb on + strand, within DZA65_RS03860 at 818.484 kb on - strand, within DZA65_RS03860 at 818.544 kb on + strand, within DZA65_RS03860 at 818.713 kb on + strand, within DZA65_RS03860 at 818.753 kb on + strand, within DZA65_RS03860 at 818.797 kb on + strand, within DZA65_RS03860 at 818.797 kb on + strand, within DZA65_RS03860 at 818.798 kb on - strand, within DZA65_RS03860 at 818.798 kb on - strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.419 kb on + strand, within DZA65_RS03860 at 819.419 kb on + strand, within DZA65_RS03860 at 819.435 kb on - strand, within DZA65_RS03860 at 819.488 kb on + strand, within DZA65_RS03860 at 819.512 kb on + strand, within DZA65_RS03860 at 819.512 kb on + strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.565 kb on - strand, within DZA65_RS03860 at 819.728 kb on + strand, within DZA65_RS03860 at 819.933 kb on + strand at 819.933 kb on + strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.960 kb on - strand at 819.960 kb on - strand at 819.998 kb on + strand at 819.999 kb on - strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.067 kb on + strand at 820.067 kb on + strand at 820.068 kb on - strand at 820.110 kb on + strand at 820.111 kb on - strand at 820.134 kb on + strand at 820.134 kb on + strand at 820.171 kb on - strand at 820.174 kb on + strand at 820.174 kb on + strand at 820.228 kb on - strand at 820.228 kb on - strand at 820.244 kb on - strand at 820.247 kb on - strand at 820.259 kb on + strand at 820.260 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.327 kb on + strand at 820.327 kb on + strand at 820.338 kb on + strand at 820.338 kb on + strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.419 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.449 kb on - strand at 820.485 kb on + strand at 820.486 kb on - strand at 820.495 kb on + strand at 820.495 kb on + strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.625 kb on + strand, within DZA65_RS03865 at 820.625 kb on + strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.674 kb on + strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.856 kb on + strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 817,084 + DZA65_RS03855 0.39 +0.5 817,084 + DZA65_RS03855 0.39 -0.1 817,085 - DZA65_RS03855 0.39 -1.0 817,085 - DZA65_RS03855 0.39 +0.4 817,085 - DZA65_RS03855 0.39 -0.9 817,088 + DZA65_RS03855 0.39 +1.3 817,088 + DZA65_RS03855 0.39 -0.0 817,088 + DZA65_RS03855 0.39 -1.6 817,088 + DZA65_RS03855 0.39 -0.0 817,089 - DZA65_RS03855 0.39 -0.6 817,089 - DZA65_RS03855 0.39 -2.2 817,185 + DZA65_RS03855 0.46 -1.1 817,185 + DZA65_RS03855 0.46 -0.0 817,185 + DZA65_RS03855 0.46 +0.4 817,185 + DZA65_RS03855 0.46 -1.4 817,186 - DZA65_RS03855 0.46 -0.1 817,186 - DZA65_RS03855 0.46 -1.0 817,186 - DZA65_RS03855 0.46 -0.0 817,186 - DZA65_RS03855 0.46 +1.5 817,186 - DZA65_RS03855 0.46 +0.7 817,186 - -0.0 817,186 - DZA65_RS03855 0.46 -0.9 817,186 - DZA65_RS03855 0.46 -0.5 817,191 + DZA65_RS03855 0.46 -0.6 817,191 + DZA65_RS03855 0.46 +0.2 817,191 + DZA65_RS03855 0.46 +0.7 817,191 + DZA65_RS03855 0.46 -0.0 817,191 + DZA65_RS03855 0.46 +1.0 817,192 - DZA65_RS03855 0.46 -1.4 817,192 - DZA65_RS03855 0.46 +2.1 817,192 - DZA65_RS03855 0.46 +0.8 817,192 - DZA65_RS03855 0.46 +0.5 817,253 + DZA65_RS03855 0.50 +0.6 817,253 + DZA65_RS03855 0.50 +1.6 817,253 + DZA65_RS03855 0.50 -0.6 817,254 - DZA65_RS03855 0.50 -0.9 817,254 - DZA65_RS03855 0.50 -1.6 817,254 - DZA65_RS03855 0.50 +1.5 817,258 + DZA65_RS03855 0.51 +0.1 817,259 - DZA65_RS03855 0.51 +0.2 817,496 + DZA65_RS03855 0.66 -0.5 817,503 + -1.9 817,503 + DZA65_RS03855 0.67 -1.9 817,503 + DZA65_RS03855 0.67 -1.2 817,503 + DZA65_RS03855 0.67 -1.3 817,504 - DZA65_RS03855 0.67 -0.7 817,504 - DZA65_RS03855 0.67 +1.7 817,505 + DZA65_RS03855 0.67 -0.2 817,505 + DZA65_RS03855 0.67 -0.6 817,506 - DZA65_RS03855 0.67 -1.0 817,584 + DZA65_RS03855 0.72 -0.0 817,584 + DZA65_RS03855 0.72 -1.0 817,584 + DZA65_RS03855 0.72 -0.3 817,584 + DZA65_RS03855 0.72 +1.6 817,585 - DZA65_RS03855 0.72 -1.0 817,585 - DZA65_RS03855 0.72 +0.6 817,585 - DZA65_RS03855 0.72 +0.4 817,585 - DZA65_RS03855 0.72 -0.8 817,722 + DZA65_RS03855 0.81 -0.1 817,741 + DZA65_RS03855 0.83 +2.0 817,809 - DZA65_RS03855 0.87 +0.3 817,809 - DZA65_RS03855 0.87 +0.1 817,887 + +0.4 817,888 - -0.1 817,888 - +0.3 817,888 - -0.0 817,911 + +1.0 817,912 - -1.9 817,977 - +1.5 818,001 + +2.3 818,001 + +0.4 818,001 + -0.9 818,002 - -1.0 818,002 - +0.7 818,035 + +0.4 818,035 + -0.0 818,035 + -1.0 818,035 + -0.3 818,035 + -1.9 818,035 + +0.1 818,036 - -0.0 818,036 - +1.4 818,036 - -1.4 818,036 - +0.4 818,036 - -1.4 818,087 + -0.6 818,087 + -1.7 818,087 + +1.0 818,087 + +0.5 818,088 - -0.9 818,088 - -0.0 818,088 - +1.0 818,088 - +1.7 818,282 + DZA65_RS03860 0.13 -2.4 818,484 - DZA65_RS03860 0.23 -0.2 818,544 + DZA65_RS03860 0.27 +1.1 818,713 + DZA65_RS03860 0.35 +0.7 818,753 + DZA65_RS03860 0.37 -2.1 818,797 + DZA65_RS03860 0.40 -0.1 818,797 + DZA65_RS03860 0.40 +2.3 818,798 - DZA65_RS03860 0.40 -0.1 818,798 - DZA65_RS03860 0.40 -1.1 819,401 + DZA65_RS03860 0.71 +0.9 819,401 + DZA65_RS03860 0.71 -2.1 819,401 + DZA65_RS03860 0.71 -0.1 819,401 + DZA65_RS03860 0.71 -1.4 819,402 - DZA65_RS03860 0.71 -0.6 819,402 - -0.4 819,402 - DZA65_RS03860 0.71 +0.9 819,402 - DZA65_RS03860 0.71 -1.6 819,402 - DZA65_RS03860 0.71 -1.2 819,402 - DZA65_RS03860 0.71 +0.5 819,413 + DZA65_RS03860 0.72 -1.4 819,413 + DZA65_RS03860 0.72 +1.3 819,413 + DZA65_RS03860 0.72 -0.3 819,413 + DZA65_RS03860 0.72 -1.4 819,414 - DZA65_RS03860 0.72 -1.5 819,414 - DZA65_RS03860 0.72 +0.6 819,414 - DZA65_RS03860 0.72 -1.1 819,419 + DZA65_RS03860 0.72 -1.9 819,419 + DZA65_RS03860 0.72 +1.3 819,435 - DZA65_RS03860 0.73 -0.9 819,488 + DZA65_RS03860 0.75 -2.1 819,512 + DZA65_RS03860 0.77 +0.2 819,512 + DZA65_RS03860 0.77 +0.7 819,513 - DZA65_RS03860 0.77 -0.1 819,513 - DZA65_RS03860 0.77 +0.8 819,565 - DZA65_RS03860 0.79 -1.4 819,728 + DZA65_RS03860 0.88 +1.8 819,933 + -0.4 819,933 + +2.7 819,934 - -2.1 819,934 - +2.0 819,934 - -0.1 819,934 - -0.6 819,956 + -0.6 819,956 + -0.3 819,956 + +0.6 819,956 + +0.5 819,957 - +1.3 819,957 - -1.1 819,957 - -1.1 819,957 - +0.1 819,957 - -1.4 819,957 - -0.6 819,957 - -0.2 819,959 + -1.1 819,959 + +1.9 819,959 + -0.4 819,959 + -1.6 819,960 - +0.1 819,960 - +0.5 819,998 + -0.7 819,999 - -0.0 820,045 + +1.5 820,045 + -0.4 820,045 + -3.7 820,046 - +0.2 820,046 - -1.4 820,046 - -1.0 820,067 + -0.4 820,067 + -0.6 820,068 - +2.0 820,110 + -1.0 820,111 - +1.2 820,134 + +1.1 820,134 + -0.2 820,171 - +0.6 820,174 + +0.2 820,174 + -1.4 820,228 - +0.0 820,228 - -0.3 820,244 - -0.4 820,247 - +1.2 820,259 + +1.6 820,260 - -0.0 820,286 - +0.0 820,286 - +1.5 820,286 - -2.0 820,327 + +1.5 820,327 + +1.2 820,338 + +0.9 820,338 + +1.7 820,339 - -2.0 820,339 - +1.0 820,339 - +1.6 820,339 - +0.6 820,419 - -0.7 820,424 - -0.4 820,424 - -2.2 820,424 - +0.6 820,424 - -2.9 820,424 - -0.0 820,448 + +2.0 820,448 + +2.3 820,448 + +0.4 820,448 + +0.5 820,448 + -0.2 820,448 + -1.0 820,449 - -0.3 820,485 + -0.0 820,486 - +0.5 820,495 + +0.3 820,495 + -1.5 820,575 - +0.1 820,575 - +1.0 820,575 - -0.2 820,575 - +1.0 820,625 + DZA65_RS03865 0.14 -2.4 820,625 + DZA65_RS03865 0.14 -1.0 820,626 - DZA65_RS03865 0.14 -1.4 820,626 - DZA65_RS03865 0.14 -0.5 820,674 + DZA65_RS03865 0.19 -1.6 820,690 - DZA65_RS03865 0.20 -0.0 820,690 - DZA65_RS03865 0.20 -1.0 820,856 + DZA65_RS03865 0.37 +2.3 820,931 - DZA65_RS03865 0.45 -0.2 820,931 - DZA65_RS03865 0.45 -0.6 820,931 - DZA65_RS03865 0.45 -0.6 820,931 - DZA65_RS03865 0.45 -1.4 820,931 - DZA65_RS03865 0.45 -1.6 820,931 - DZA65_RS03865 0.45 +0.5
Or see this region's nucleotide sequence