Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02400 and DZA65_RS02405 are separated by 18 nucleotides DZA65_RS02405 and DZA65_RS02410 are separated by 26 nucleotides DZA65_RS02410 and DZA65_RS02415 are separated by 207 nucleotides DZA65_RS02415 and DZA65_RS02420 overlap by 4 nucleotides DZA65_RS02420 and DZA65_RS02425 are separated by 76 nucleotides
DZA65_RS02400: DZA65_RS02400 - HTH-type transcriptional activator RhaR, at 518,708 to 519,562
_RS02400
DZA65_RS02405: DZA65_RS02405 - hypothetical protein, at 519,581 to 519,865
_RS02405
DZA65_RS02410: DZA65_RS02410 - hypothetical protein, at 519,892 to 520,155
_RS02410
DZA65_RS02415: DZA65_RS02415 - ABC transporter ATP-binding protein, at 520,363 to 522,063
_RS02415
DZA65_RS02420: DZA65_RS02420 - ABC transporter permease, at 522,060 to 522,899
_RS02420
DZA65_RS02425: DZA65_RS02425 - ABC transporter permease, at 522,976 to 523,941
_RS02425
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 519.377 kb on + strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.479 kb on + strand at 519.582 kb on + strand at 519.582 kb on + strand at 519.583 kb on - strand at 519.621 kb on + strand, within DZA65_RS02405 at 519.622 kb on - strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.644 kb on - strand, within DZA65_RS02405 at 519.647 kb on + strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.756 kb on - strand, within DZA65_RS02405 at 519.756 kb on - strand, within DZA65_RS02405 at 519.783 kb on + strand, within DZA65_RS02405 at 519.800 kb on + strand, within DZA65_RS02405 at 519.957 kb on + strand, within DZA65_RS02410 at 519.957 kb on + strand, within DZA65_RS02410 at 519.958 kb on - strand, within DZA65_RS02410 at 519.964 kb on - strand, within DZA65_RS02410 at 519.967 kb on - strand, within DZA65_RS02410 at 519.967 kb on - strand, within DZA65_RS02410 at 519.977 kb on - strand, within DZA65_RS02410 at 519.977 kb on - strand, within DZA65_RS02410 at 519.990 kb on - strand, within DZA65_RS02410 at 520.023 kb on + strand, within DZA65_RS02410 at 520.023 kb on + strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.024 kb on - strand, within DZA65_RS02410 at 520.083 kb on + strand, within DZA65_RS02410 at 520.083 kb on + strand, within DZA65_RS02410 at 520.084 kb on - strand, within DZA65_RS02410 at 520.085 kb on + strand, within DZA65_RS02410 at 520.086 kb on - strand, within DZA65_RS02410 at 520.103 kb on + strand, within DZA65_RS02410 at 520.123 kb on + strand, within DZA65_RS02410 at 520.124 kb on - strand, within DZA65_RS02410 at 520.138 kb on - strand at 520.171 kb on + strand at 520.172 kb on - strand at 520.203 kb on + strand at 520.204 kb on - strand at 520.204 kb on - strand at 520.208 kb on + strand at 520.218 kb on - strand at 520.289 kb on - strand at 520.309 kb on - strand at 520.321 kb on + strand at 520.358 kb on + strand at 520.371 kb on - strand at 520.375 kb on - strand at 520.392 kb on + strand at 520.396 kb on + strand at 520.396 kb on + strand at 520.396 kb on + strand at 520.421 kb on - strand at 520.434 kb on - strand at 520.456 kb on + strand at 520.457 kb on - strand at 520.532 kb on - strand at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.551 kb on + strand, within DZA65_RS02415 at 520.552 kb on - strand, within DZA65_RS02415 at 520.552 kb on - strand, within DZA65_RS02415 at 520.695 kb on + strand, within DZA65_RS02415 at 520.695 kb on + strand, within DZA65_RS02415 at 520.695 kb on + strand, within DZA65_RS02415 at 520.696 kb on - strand, within DZA65_RS02415 at 520.696 kb on - strand, within DZA65_RS02415 at 520.696 kb on - strand, within DZA65_RS02415 at 520.696 kb on - strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.782 kb on + strand, within DZA65_RS02415 at 520.783 kb on - strand, within DZA65_RS02415 at 520.783 kb on - strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.834 kb on + strand, within DZA65_RS02415 at 520.835 kb on - strand, within DZA65_RS02415 at 520.835 kb on - strand, within DZA65_RS02415 at 520.835 kb on - strand, within DZA65_RS02415 at 520.999 kb on + strand, within DZA65_RS02415 at 521.000 kb on - strand, within DZA65_RS02415 at 521.000 kb on - strand, within DZA65_RS02415 at 521.000 kb on - strand, within DZA65_RS02415 at 521.022 kb on + strand, within DZA65_RS02415 at 521.143 kb on + strand, within DZA65_RS02415 at 521.143 kb on + strand, within DZA65_RS02415 at 521.144 kb on - strand, within DZA65_RS02415 at 521.144 kb on - strand, within DZA65_RS02415 at 521.286 kb on + strand, within DZA65_RS02415 at 521.286 kb on + strand, within DZA65_RS02415 at 521.287 kb on - strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.288 kb on + strand, within DZA65_RS02415 at 521.289 kb on - strand, within DZA65_RS02415 at 521.289 kb on - strand, within DZA65_RS02415 at 521.289 kb on - strand, within DZA65_RS02415 at 521.289 kb on - strand, within DZA65_RS02415 at 521.413 kb on + strand, within DZA65_RS02415 at 521.414 kb on - strand, within DZA65_RS02415 at 521.758 kb on + strand, within DZA65_RS02415 at 521.758 kb on + strand, within DZA65_RS02415 at 521.759 kb on - strand, within DZA65_RS02415 at 521.759 kb on - strand, within DZA65_RS02415 at 522.012 kb on + strand at 522.012 kb on + strand at 522.013 kb on - strand at 522.019 kb on + strand at 522.034 kb on + strand at 522.034 kb on + strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.038 kb on - strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.329 kb on + strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.556 kb on - strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.675 kb on + strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.825 kb on + strand at 522.826 kb on - strand at 522.870 kb on - strand at 522.874 kb on + strand at 522.875 kb on - strand at 522.893 kb on + strand at 522.894 kb on - strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.925 kb on - strand at 522.933 kb on - strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.948 kb on - strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.954 kb on + strand at 522.954 kb on + strand at 522.955 kb on - strand at 522.963 kb on - strand at 522.963 kb on - strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 519,377 + DZA65_RS02400 0.78 -1.4 519,423 - DZA65_RS02400 0.84 -0.2 519,423 - DZA65_RS02400 0.84 -0.3 519,479 + +0.9 519,582 + +0.5 519,582 + +1.7 519,583 - -0.7 519,621 + DZA65_RS02405 0.14 +0.1 519,622 - DZA65_RS02405 0.14 -0.5 519,643 + DZA65_RS02405 0.22 -0.0 519,643 + DZA65_RS02405 0.22 +0.1 519,644 - DZA65_RS02405 0.22 +0.1 519,647 + DZA65_RS02405 0.23 +0.3 519,648 - DZA65_RS02405 0.24 -0.5 519,648 - DZA65_RS02405 0.24 -0.5 519,756 - DZA65_RS02405 0.61 +0.2 519,756 - DZA65_RS02405 0.61 -0.2 519,783 + DZA65_RS02405 0.71 -2.9 519,800 + DZA65_RS02405 0.77 +0.1 519,957 + DZA65_RS02410 0.25 +0.1 519,957 + DZA65_RS02410 0.25 -0.5 519,958 - DZA65_RS02410 0.25 +2.1 519,964 - DZA65_RS02410 0.27 +0.5 519,967 - DZA65_RS02410 0.28 +0.1 519,967 - DZA65_RS02410 0.28 +1.5 519,977 - DZA65_RS02410 0.32 +0.6 519,977 - DZA65_RS02410 0.32 -0.5 519,990 - DZA65_RS02410 0.37 +0.5 520,023 + DZA65_RS02410 0.50 -1.1 520,023 + DZA65_RS02410 0.50 -0.2 520,024 - DZA65_RS02410 0.50 +0.9 520,024 - DZA65_RS02410 0.50 -0.5 520,024 - DZA65_RS02410 0.50 +1.5 520,083 + DZA65_RS02410 0.72 -0.5 520,083 + DZA65_RS02410 0.72 -0.5 520,084 - DZA65_RS02410 0.73 -1.7 520,085 + DZA65_RS02410 0.73 +0.9 520,086 - DZA65_RS02410 0.73 -0.7 520,103 + DZA65_RS02410 0.80 -1.1 520,123 + DZA65_RS02410 0.88 -0.7 520,124 - DZA65_RS02410 0.88 -0.7 520,138 - +0.1 520,171 + +1.2 520,172 - -1.7 520,203 + -2.1 520,204 - -1.7 520,204 - +0.2 520,208 + +0.8 520,218 - -0.9 520,289 - +1.1 520,309 - +0.1 520,321 + +0.4 520,358 + -1.5 520,371 - +1.1 520,375 - -0.1 520,392 + +1.8 520,396 + +1.1 520,396 + -0.0 520,396 + -0.9 520,421 - -1.3 520,434 - +0.1 520,456 + +1.7 520,457 - -1.7 520,532 - +0.1 520,551 + DZA65_RS02415 0.11 -0.7 520,551 + DZA65_RS02415 0.11 +0.1 520,551 + DZA65_RS02415 0.11 -1.1 520,551 + DZA65_RS02415 0.11 -1.5 520,552 - DZA65_RS02415 0.11 +1.4 520,552 - DZA65_RS02415 0.11 +0.1 520,695 + DZA65_RS02415 0.20 +2.9 520,695 + DZA65_RS02415 0.20 -1.3 520,695 + DZA65_RS02415 0.20 -0.1 520,696 - DZA65_RS02415 0.20 -0.5 520,696 - DZA65_RS02415 0.20 -0.6 520,696 - DZA65_RS02415 0.20 +0.7 520,696 - DZA65_RS02415 0.20 +1.1 520,782 + DZA65_RS02415 0.25 +1.1 520,782 + DZA65_RS02415 0.25 -0.5 520,782 + DZA65_RS02415 0.25 -1.2 520,782 + DZA65_RS02415 0.25 +2.3 520,782 + DZA65_RS02415 0.25 -0.5 520,782 + DZA65_RS02415 0.25 +0.1 520,783 - DZA65_RS02415 0.25 -1.9 520,783 - DZA65_RS02415 0.25 +0.3 520,834 + DZA65_RS02415 0.28 +0.1 520,834 + DZA65_RS02415 0.28 -0.3 520,834 + DZA65_RS02415 0.28 +0.7 520,834 + DZA65_RS02415 0.28 -0.3 520,834 + DZA65_RS02415 0.28 -2.9 520,834 + DZA65_RS02415 0.28 -1.1 520,834 + DZA65_RS02415 0.28 +1.3 520,835 - DZA65_RS02415 0.28 +0.1 520,835 - DZA65_RS02415 0.28 -2.4 520,835 - DZA65_RS02415 0.28 -1.7 520,999 + DZA65_RS02415 0.37 +0.6 521,000 - DZA65_RS02415 0.37 -2.0 521,000 - DZA65_RS02415 0.37 +1.1 521,000 - DZA65_RS02415 0.37 -2.3 521,022 + DZA65_RS02415 0.39 -0.4 521,143 + DZA65_RS02415 0.46 -1.7 521,143 + DZA65_RS02415 0.46 -0.3 521,144 - DZA65_RS02415 0.46 +0.9 521,144 - DZA65_RS02415 0.46 +0.2 521,286 + DZA65_RS02415 0.54 +0.1 521,286 + DZA65_RS02415 0.54 -0.2 521,287 - DZA65_RS02415 0.54 +1.3 521,288 + DZA65_RS02415 0.54 -0.9 521,288 + DZA65_RS02415 0.54 +0.4 521,288 + DZA65_RS02415 0.54 +1.4 521,288 + DZA65_RS02415 0.54 +0.5 521,288 + DZA65_RS02415 0.54 +0.2 521,288 + DZA65_RS02415 0.54 -0.7 521,288 + DZA65_RS02415 0.54 +0.1 521,289 - DZA65_RS02415 0.54 -0.9 521,289 - DZA65_RS02415 0.54 -0.5 521,289 - DZA65_RS02415 0.54 +0.1 521,289 - DZA65_RS02415 0.54 -0.9 521,413 + DZA65_RS02415 0.62 +2.1 521,414 - DZA65_RS02415 0.62 -0.9 521,758 + DZA65_RS02415 0.82 -0.5 521,758 + DZA65_RS02415 0.82 -1.3 521,759 - DZA65_RS02415 0.82 -0.5 521,759 - DZA65_RS02415 0.82 +0.3 522,012 + -3.3 522,012 + +1.1 522,013 - -1.7 522,019 + -0.6 522,034 + -2.5 522,034 + -0.5 522,035 - +0.8 522,035 - +0.4 522,035 - +0.3 522,038 - -1.5 522,090 + +1.1 522,090 + -1.4 522,090 + -1.7 522,090 + -1.9 522,090 + -0.1 522,090 + +1.1 522,090 + +0.9 522,091 - -1.5 522,091 - +0.1 522,091 - +1.2 522,091 - -0.3 522,329 + DZA65_RS02420 0.32 -0.3 522,330 - DZA65_RS02420 0.32 +1.1 522,330 - DZA65_RS02420 0.32 -1.1 522,346 + DZA65_RS02420 0.34 +0.1 522,346 + DZA65_RS02420 0.34 +0.4 522,346 + DZA65_RS02420 0.34 -2.4 522,346 + DZA65_RS02420 0.34 +0.1 522,346 + DZA65_RS02420 0.34 +0.7 522,346 + DZA65_RS02420 0.34 -1.1 522,347 - DZA65_RS02420 0.34 -3.6 522,347 - DZA65_RS02420 0.34 -1.3 522,347 - DZA65_RS02420 0.34 +0.7 522,347 - DZA65_RS02420 0.34 -0.3 522,347 - DZA65_RS02420 0.34 +1.5 522,347 - DZA65_RS02420 0.34 -1.5 522,470 + DZA65_RS02420 0.49 +0.3 522,470 + DZA65_RS02420 0.49 +0.1 522,470 + DZA65_RS02420 0.49 +0.9 522,556 - DZA65_RS02420 0.59 -0.3 522,673 + DZA65_RS02420 0.73 -0.4 522,673 + DZA65_RS02420 0.73 -0.7 522,674 - DZA65_RS02420 0.73 -0.2 522,674 - DZA65_RS02420 0.73 -0.3 522,675 + DZA65_RS02420 0.73 -0.5 522,676 - DZA65_RS02420 0.73 -0.9 522,676 - DZA65_RS02420 0.73 -2.6 522,825 + +0.5 522,826 - -0.9 522,870 - +1.1 522,874 + +0.5 522,875 - -1.9 522,893 + -0.9 522,894 - -2.1 522,917 + +0.5 522,917 + +0.6 522,917 + -1.3 522,918 - +0.9 522,918 - +1.6 522,918 - -0.9 522,918 - +0.4 522,925 - -1.2 522,933 - +0.4 522,939 + -0.4 522,939 + +0.1 522,939 + +0.2 522,939 + -0.4 522,940 - -0.4 522,940 - -0.1 522,940 - +0.1 522,940 - +0.3 522,948 - -0.1 522,949 + -0.5 522,949 + +0.3 522,949 + -0.2 522,949 + -1.3 522,949 + +1.7 522,949 + -0.6 522,950 - +1.3 522,950 - +0.1 522,950 - -2.9 522,950 - -1.7 522,950 - +1.7 522,950 - +1.5 522,950 - -1.3 522,950 - +0.6 522,950 - -0.8 522,950 - +0.8 522,954 + +0.1 522,954 + +0.6 522,955 - +0.8 522,963 - +0.5 522,963 - -1.9 522,964 + +0.3 522,964 + -0.2 522,964 + -1.4 522,964 + +0.9 522,964 + -1.9 522,964 + -0.3 522,964 + +1.1 522,965 - +1.0 522,965 - +0.8 522,965 - -1.6 522,965 - -1.5 522,965 - +2.4 522,965 - -0.7 522,965 - +1.6 522,965 - +0.1 522,965 - +0.8 523,028 + -1.4 523,028 + +1.4 523,028 + +0.1 523,028 + +1.6 523,029 - -0.2 523,029 - +1.1 523,029 - -1.2 523,029 - +0.1
Or see this region's nucleotide sequence