Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02145 and DZA65_RS02150 overlap by 11 nucleotides DZA65_RS02150 and DZA65_RS02160 are separated by 297 nucleotides
DZA65_RS02145: DZA65_RS02145 - type II toxin-antitoxin system RelE/ParE family toxin, at 472,540 to 472,860
_RS02145
DZA65_RS02150: DZA65_RS02150 - helix-turn-helix transcriptional regulator, at 472,850 to 473,134
_RS02150
DZA65_RS02160: DZA65_RS02160 - hypothetical protein, at 473,432 to 473,833
_RS02160
Position (kb) 472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 471.578 kb on - strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.667 kb on - strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.735 kb on + strand at 471.736 kb on - strand at 471.736 kb on - strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.816 kb on - strand at 471.816 kb on - strand at 471.822 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.893 kb on - strand at 471.893 kb on - strand at 471.896 kb on + strand at 471.896 kb on + strand at 471.897 kb on - strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.918 kb on - strand at 471.920 kb on + strand at 471.936 kb on + strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.971 kb on + strand at 471.971 kb on + strand at 471.972 kb on - strand at 471.989 kb on - strand at 471.989 kb on - strand at 472.035 kb on + strand at 472.036 kb on - strand at 472.036 kb on - strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.038 kb on - strand at 472.038 kb on - strand at 472.318 kb on + strand at 472.318 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.412 kb on + strand at 472.412 kb on + strand at 472.412 kb on + strand at 472.424 kb on + strand at 472.424 kb on + strand at 472.455 kb on + strand at 472.455 kb on + strand at 472.456 kb on - strand at 472.512 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.525 kb on - strand at 472.527 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.641 kb on + strand, within DZA65_RS02145 at 472.655 kb on + strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.701 kb on - strand, within DZA65_RS02145 at 472.710 kb on + strand, within DZA65_RS02145 at 472.711 kb on - strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand at 472.756 kb on - strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.764 kb on + strand, within DZA65_RS02145 at 472.765 kb on - strand, within DZA65_RS02145 at 472.770 kb on - strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 473.058 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.133 kb on - strand at 473.344 kb on - strand at 473.362 kb on + strand at 473.362 kb on + strand at 473.363 kb on - strand at 473.363 kb on - strand at 473.379 kb on + strand at 473.380 kb on - strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.383 kb on - strand at 473.388 kb on + strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.392 kb on + strand at 473.393 kb on - strand at 473.393 kb on - strand at 473.407 kb on + strand at 473.408 kb on - strand at 473.408 kb on - strand at 473.410 kb on + strand at 473.411 kb on - strand at 473.411 kb on - strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.476 kb on + strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.553 kb on - strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.560 kb on + strand, within DZA65_RS02160 at 473.561 kb on - strand, within DZA65_RS02160 at 473.591 kb on + strand, within DZA65_RS02160 at 473.609 kb on + strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.626 kb on - strand at 473.626 kb on - strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.642 kb on - strand, within DZA65_RS02160 at 473.668 kb on + strand, within DZA65_RS02160 at 473.700 kb on - strand, within DZA65_RS02160 at 473.700 kb on - strand at 473.730 kb on - strand, within DZA65_RS02160 at 473.797 kb on + strand at 473.797 kb on + strand at 473.798 kb on - strand at 473.801 kb on + strand at 473.801 kb on + strand at 473.802 kb on - strand at 473.818 kb on + strand at 473.819 kb on - strand at 473.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 471,578 - +0.6 471,666 + +0.1 471,666 + +0.1 471,666 + -1.7 471,667 - -0.9 471,726 + -0.6 471,726 + +0.3 471,726 + -0.9 471,727 - -0.5 471,727 - +0.1 471,727 - -0.5 471,735 + -1.0 471,736 - -0.5 471,736 - +0.6 471,815 + +0.1 471,815 + +0.2 471,815 + +0.8 471,815 + +0.1 471,815 + -0.2 471,815 + +1.4 471,815 + -0.5 471,815 + -0.5 471,816 - +0.3 471,816 - -0.2 471,822 + -0.7 471,892 + -0.5 471,892 + -0.9 471,892 + +0.1 471,892 + +2.0 471,892 + -1.0 471,892 + -0.3 471,893 - -1.5 471,893 - -0.9 471,896 + -2.5 471,896 + +0.1 471,897 - +0.3 471,917 + -2.9 471,917 + -2.0 471,917 + -1.1 471,917 + -0.5 471,917 + +1.3 471,918 - -1.4 471,920 + -1.7 471,936 + -1.1 471,937 - -0.5 471,937 - -0.7 471,937 - +0.9 471,941 + +0.8 471,941 + +1.9 471,941 + -1.2 471,941 + +0.1 471,941 + -1.7 471,941 + -0.5 471,942 - -0.2 471,942 - +0.1 471,942 - -1.8 471,971 + +2.2 471,971 + +0.1 471,972 - -0.3 471,989 - +0.5 471,989 - -0.7 472,035 + +0.2 472,036 - -0.5 472,036 - +0.5 472,037 + -1.5 472,037 + -0.3 472,037 + -2.4 472,038 - -2.2 472,038 - -1.4 472,318 + +2.1 472,318 + +0.6 472,347 + +1.2 472,347 + +0.1 472,347 + -0.2 472,347 + -1.5 472,347 + +0.9 472,347 + +0.7 472,347 + +1.4 472,347 + -0.5 472,347 + -0.5 472,347 + -0.5 472,347 + +1.1 472,348 - -2.2 472,348 - -2.2 472,348 - -0.5 472,348 - -1.2 472,348 - -1.9 472,348 - -0.4 472,348 - +1.1 472,348 - -0.5 472,348 - -1.5 472,348 - -2.9 472,348 - -0.2 472,412 + -0.1 472,412 + +0.0 472,412 + -1.9 472,424 + -0.1 472,424 + +0.6 472,455 + +0.2 472,455 + +0.8 472,456 - +0.2 472,512 + +1.1 472,524 + -0.2 472,524 + -1.5 472,524 + -0.2 472,525 - +1.8 472,527 + +0.3 472,543 + -0.9 472,543 + -0.4 472,543 + -1.0 472,543 + +1.1 472,543 + +1.1 472,543 + -0.7 472,543 + +0.1 472,543 + +0.1 472,543 + +1.0 472,544 - -1.1 472,544 - +0.7 472,544 - +1.6 472,544 - -1.1 472,544 - +0.3 472,544 - +1.3 472,583 - DZA65_RS02145 0.13 +0.1 472,583 - DZA65_RS02145 0.13 -0.9 472,583 - DZA65_RS02145 0.13 +2.7 472,599 + DZA65_RS02145 0.18 +0.3 472,599 + DZA65_RS02145 0.18 -1.5 472,641 + DZA65_RS02145 0.31 -0.5 472,655 + DZA65_RS02145 0.36 -0.1 472,656 - DZA65_RS02145 0.36 -1.0 472,656 - DZA65_RS02145 0.36 -0.3 472,701 - DZA65_RS02145 0.50 -0.9 472,710 + DZA65_RS02145 0.53 +0.1 472,711 - DZA65_RS02145 0.53 +1.0 472,755 + DZA65_RS02145 0.67 -2.5 472,755 + DZA65_RS02145 0.67 -0.0 472,755 + DZA65_RS02145 0.67 -0.3 472,755 + DZA65_RS02145 0.67 +1.5 472,755 + DZA65_RS02145 0.67 -2.2 472,755 + DZA65_RS02145 0.67 -0.4 472,755 + DZA65_RS02145 0.67 -0.2 472,756 - DZA65_RS02145 0.67 -1.2 472,756 - DZA65_RS02145 0.67 +0.1 472,756 - +0.2 472,756 - DZA65_RS02145 0.67 +0.4 472,762 + DZA65_RS02145 0.69 +1.9 472,762 + DZA65_RS02145 0.69 +0.3 472,764 + DZA65_RS02145 0.70 -0.2 472,765 - DZA65_RS02145 0.70 -0.9 472,770 - DZA65_RS02145 0.72 -1.6 472,814 + DZA65_RS02145 0.85 -1.2 472,814 + DZA65_RS02145 0.85 +1.2 472,814 + DZA65_RS02145 0.85 +0.1 472,814 + DZA65_RS02145 0.85 +0.3 472,996 + DZA65_RS02150 0.51 +1.8 472,996 + DZA65_RS02150 0.51 +2.1 472,996 + DZA65_RS02150 0.51 -1.9 472,996 + DZA65_RS02150 0.51 +0.4 472,996 + DZA65_RS02150 0.51 -0.3 472,996 + DZA65_RS02150 0.51 -1.2 473,058 + DZA65_RS02150 0.73 +1.1 473,082 + DZA65_RS02150 0.81 -0.1 473,082 + DZA65_RS02150 0.81 +0.8 473,133 - +0.0 473,344 - -1.5 473,362 + +0.1 473,362 + +0.4 473,363 - +2.4 473,363 - +1.7 473,379 + +2.7 473,380 - -0.9 473,382 + +1.3 473,382 + +1.7 473,382 + +0.5 473,383 - -1.8 473,388 + +0.2 473,389 - +0.3 473,389 - +1.1 473,389 - -0.8 473,392 + +1.2 473,393 - -0.8 473,393 - +1.1 473,407 + -1.7 473,408 - +0.1 473,408 - +1.7 473,410 + -0.5 473,411 - +0.1 473,411 - +1.1 473,452 + +1.1 473,452 + +1.1 473,452 + +0.3 473,452 + -0.9 473,452 + -2.0 473,453 - -0.9 473,453 - -0.6 473,453 - -0.2 473,476 + DZA65_RS02160 0.11 +0.0 473,477 - DZA65_RS02160 0.11 -1.9 473,477 - DZA65_RS02160 0.11 -0.5 473,477 - DZA65_RS02160 0.11 +1.1 473,509 + DZA65_RS02160 0.19 +0.9 473,509 + DZA65_RS02160 0.19 -0.3 473,511 + DZA65_RS02160 0.20 +0.3 473,511 + DZA65_RS02160 0.20 -0.3 473,511 + DZA65_RS02160 0.20 +1.7 473,511 + DZA65_RS02160 0.20 +0.1 473,511 + DZA65_RS02160 0.20 -1.5 473,512 - DZA65_RS02160 0.20 +1.5 473,512 - DZA65_RS02160 0.20 -0.1 473,519 + DZA65_RS02160 0.22 -0.4 473,519 + DZA65_RS02160 0.22 +0.2 473,552 + DZA65_RS02160 0.30 +0.1 473,552 + DZA65_RS02160 0.30 +0.6 473,552 + DZA65_RS02160 0.30 -1.5 473,553 - DZA65_RS02160 0.30 +0.1 473,556 + DZA65_RS02160 0.31 -0.8 473,556 + DZA65_RS02160 0.31 -1.6 473,556 + DZA65_RS02160 0.31 -0.6 473,556 + DZA65_RS02160 0.31 +0.7 473,556 + DZA65_RS02160 0.31 +1.5 473,556 + DZA65_RS02160 0.31 -0.2 473,556 + DZA65_RS02160 0.31 -0.5 473,557 - DZA65_RS02160 0.31 +0.2 473,557 - +0.1 473,557 - DZA65_RS02160 0.31 +0.1 473,557 - DZA65_RS02160 0.31 +2.3 473,557 - DZA65_RS02160 0.31 -0.2 473,557 - DZA65_RS02160 0.31 +0.3 473,560 + DZA65_RS02160 0.32 +0.2 473,561 - DZA65_RS02160 0.32 -1.2 473,591 + DZA65_RS02160 0.40 -0.4 473,609 + DZA65_RS02160 0.44 -2.2 473,610 - DZA65_RS02160 0.44 -0.5 473,610 - DZA65_RS02160 0.44 -1.7 473,610 - DZA65_RS02160 0.44 -0.5 473,626 - +1.4 473,626 - DZA65_RS02160 0.48 +2.4 473,638 + DZA65_RS02160 0.51 +1.6 473,638 + DZA65_RS02160 0.51 -2.5 473,638 + DZA65_RS02160 0.51 -1.1 473,639 - DZA65_RS02160 0.51 -0.4 473,639 - DZA65_RS02160 0.51 +0.3 473,642 - DZA65_RS02160 0.52 +0.3 473,668 + DZA65_RS02160 0.59 -0.9 473,700 - DZA65_RS02160 0.67 -0.5 473,700 - +0.1 473,730 - DZA65_RS02160 0.74 -0.5 473,797 + -0.3 473,797 + -0.8 473,798 - -1.1 473,801 + +1.6 473,801 + -0.1 473,802 - -0.0 473,818 + +0.2 473,819 - -0.5 473,822 + +0.8
Or see this region's nucleotide sequence