Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01755

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01750 and DZA65_RS01755 are separated by 231 nucleotidesDZA65_RS01755 and DZA65_RS01760 are separated by 87 nucleotides DZA65_RS01750: DZA65_RS01750 - DNA topoisomerase IV subunit A, at 379,886 to 382,162 _RS01750 DZA65_RS01755: DZA65_RS01755 - 1-acylglycerol-3-phosphate O-acyltransferase, at 382,394 to 383,131 _RS01755 DZA65_RS01760: DZA65_RS01760 - cell division protein FtsP, at 383,219 to 384,637 _RS01760 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 382.161 kb on - strandat 382.161 kb on - strandat 382.198 kb on - strandat 382.210 kb on - strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.290 kb on + strandat 382.291 kb on - strandat 382.291 kb on - strandat 382.291 kb on - strandat 382.345 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.361 kb on + strandat 382.364 kb on + strandat 382.364 kb on + strandat 383.129 kb on + strandat 383.129 kb on + strandat 383.130 kb on - strandat 383.130 kb on - strandat 383.130 kb on - strandat 383.190 kb on - strandat 383.190 kb on - strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.218 kb on + strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.219 kb on - strandat 383.490 kb on - strand, within DZA65_RS01760at 383.490 kb on - strand, within DZA65_RS01760at 383.572 kb on + strand, within DZA65_RS01760at 383.588 kb on - strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.639 kb on + strand, within DZA65_RS01760at 383.640 kb on - strand, within DZA65_RS01760at 383.640 kb on - strand, within DZA65_RS01760at 383.650 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.678 kb on + strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.679 kb on - strand, within DZA65_RS01760at 383.680 kb on + strand, within DZA65_RS01760at 383.680 kb on + strand, within DZA65_RS01760at 383.681 kb on - strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.722 kb on + strand, within DZA65_RS01760at 383.723 kb on - strand, within DZA65_RS01760at 383.773 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.813 kb on + strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.814 kb on - strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.848 kb on + strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.849 kb on - strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.879 kb on + strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.880 kb on - strand, within DZA65_RS01760at 383.942 kb on + strand, within DZA65_RS01760at 383.942 kb on + strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strandat 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 383.943 kb on - strand, within DZA65_RS01760at 384.070 kb on + strand, within DZA65_RS01760at 384.070 kb on + strand, within DZA65_RS01760at 384.082 kb on + strand, within DZA65_RS01760

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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382,161 - +0.5
382,161 - -0.2
382,198 - +0.1
382,210 - +0.5
382,290 + -0.2
382,290 + +0.1
382,290 + +0.8
382,290 + +1.7
382,290 + +0.2
382,291 - -1.0
382,291 - +2.1
382,291 - -0.3
382,345 + +0.1
382,361 + +0.1
382,361 + +1.1
382,361 + -0.4
382,361 + +1.1
382,361 + -0.6
382,361 + +0.4
382,361 + -1.7
382,364 + -0.9
382,364 + +0.7
383,129 + -0.4
383,129 + -1.6
383,130 - -1.2
383,130 - -0.9
383,130 - +1.3
383,190 - +1.1
383,190 - -1.1
383,218 + +1.1
383,218 + +1.7
383,218 + +0.1
383,218 + -2.1
383,218 + +0.4
383,218 + +0.3
383,219 - +0.4
383,219 - -0.1
383,219 - -2.0
383,219 - -1.6
383,490 - DZA65_RS01760 0.19 -0.1
383,490 - DZA65_RS01760 0.19 +0.8
383,572 + DZA65_RS01760 0.25 -1.2
383,588 - DZA65_RS01760 0.26 -1.9
383,639 + DZA65_RS01760 0.30 +1.1
383,639 + DZA65_RS01760 0.30 -2.1
383,639 + DZA65_RS01760 0.30 -0.5
383,640 - DZA65_RS01760 0.30 -0.5
383,640 - DZA65_RS01760 0.30 -2.4
383,650 + DZA65_RS01760 0.30 -0.5
383,678 + DZA65_RS01760 0.32 -0.5
383,678 + DZA65_RS01760 0.32 -0.9
383,678 + DZA65_RS01760 0.32 -1.9
383,678 + DZA65_RS01760 0.32 -1.0
383,679 - DZA65_RS01760 0.32 -1.7
383,679 - DZA65_RS01760 0.32 -0.7
383,679 - DZA65_RS01760 0.32 -2.1
383,679 - DZA65_RS01760 0.32 -0.9
383,679 - DZA65_RS01760 0.32 -0.5
383,680 + DZA65_RS01760 0.32 -0.0
383,680 + DZA65_RS01760 0.32 -0.2
383,681 - DZA65_RS01760 0.33 +1.1
383,722 + DZA65_RS01760 0.35 +0.5
383,722 + DZA65_RS01760 0.35 -1.6
383,722 + DZA65_RS01760 0.35 -0.9
383,723 - DZA65_RS01760 0.36 -1.1
383,773 + DZA65_RS01760 0.39 -2.1
383,813 + DZA65_RS01760 0.42 -1.5
383,813 + DZA65_RS01760 0.42 -0.0
383,813 + DZA65_RS01760 0.42 +0.0
383,813 + DZA65_RS01760 0.42 +0.5
383,814 - DZA65_RS01760 0.42 +0.7
383,814 - DZA65_RS01760 0.42 -1.2
383,814 - DZA65_RS01760 0.42 +0.1
383,848 + DZA65_RS01760 0.44 -1.3
383,848 + DZA65_RS01760 0.44 -1.6
383,848 + DZA65_RS01760 0.44 +0.1
383,848 + DZA65_RS01760 0.44 +0.1
383,848 + DZA65_RS01760 0.44 -2.7
383,849 - DZA65_RS01760 0.44 +0.1
383,849 - DZA65_RS01760 0.44 -0.5
383,849 - DZA65_RS01760 0.44 -1.7
383,849 - DZA65_RS01760 0.44 -1.4
383,849 - DZA65_RS01760 0.44 -1.4
383,879 + DZA65_RS01760 0.47 -2.2
383,879 + DZA65_RS01760 0.47 -2.3
383,879 + DZA65_RS01760 0.47 -1.2
383,879 + DZA65_RS01760 0.47 -1.2
383,879 + DZA65_RS01760 0.47 -1.2
383,880 - DZA65_RS01760 0.47 +0.1
383,880 - DZA65_RS01760 0.47 -0.9
383,880 - DZA65_RS01760 0.47 -0.9
383,880 - DZA65_RS01760 0.47 -2.0
383,880 - DZA65_RS01760 0.47 -1.8
383,880 - DZA65_RS01760 0.47 +0.1
383,942 + DZA65_RS01760 0.51 -0.9
383,942 + DZA65_RS01760 0.51 -1.4
383,943 - DZA65_RS01760 0.51 +2.4
383,943 - +0.1
383,943 - DZA65_RS01760 0.51 -1.2
383,943 - DZA65_RS01760 0.51 +0.3
383,943 - DZA65_RS01760 0.51 -2.1
383,943 - DZA65_RS01760 0.51 +0.1
384,070 + DZA65_RS01760 0.60 -0.3
384,070 + DZA65_RS01760 0.60 -0.6
384,082 + DZA65_RS01760 0.61 -0.5

Or see this region's nucleotide sequence