Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00195 and DZA65_RS00200 are separated by 499 nucleotides DZA65_RS00200 and DZA65_RS00205 overlap by 4 nucleotides DZA65_RS00205 and DZA65_RS00210 are separated by 239 nucleotides
DZA65_RS00195: DZA65_RS00195 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,305 to 46,267
_RS00195
DZA65_RS00200: DZA65_RS00200 - N-acetyltransferase, at 46,767 to 47,222
_RS00200
DZA65_RS00205: DZA65_RS00205 - DNA-3-methyladenine glycosylase I, at 47,219 to 47,779
_RS00205
DZA65_RS00210: DZA65_RS00210 - sulfite exporter TauE/SafE family protein, at 48,019 to 48,825
_RS00210
Position (kb) 47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 46.223 kb on + strand at 46.245 kb on + strand at 46.246 kb on - strand at 46.246 kb on - strand at 46.246 kb on - strand at 46.340 kb on + strand at 46.340 kb on + strand at 46.341 kb on - strand at 46.351 kb on - strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.376 kb on - strand at 46.409 kb on + strand at 46.409 kb on + strand at 46.409 kb on + strand at 46.432 kb on + strand at 46.432 kb on + strand at 46.433 kb on - strand at 46.440 kb on - strand at 46.649 kb on - strand at 46.649 kb on - strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.677 kb on - strand at 46.677 kb on - strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.692 kb on + strand at 46.692 kb on + strand at 46.693 kb on - strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.718 kb on + strand at 46.736 kb on - strand at 46.812 kb on - strand at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.844 kb on - strand, within DZA65_RS00200 at 46.844 kb on - strand, within DZA65_RS00200 at 46.860 kb on - strand, within DZA65_RS00200 at 46.862 kb on + strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.879 kb on + strand, within DZA65_RS00200 at 46.879 kb on + strand at 46.879 kb on + strand, within DZA65_RS00200 at 46.879 kb on + strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.909 kb on + strand, within DZA65_RS00200 at 46.909 kb on + strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.989 kb on - strand, within DZA65_RS00200 at 46.989 kb on - strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.141 kb on + strand, within DZA65_RS00200 at 47.142 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.285 kb on - strand, within DZA65_RS00205 at 47.312 kb on - strand, within DZA65_RS00205 at 47.405 kb on - strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.495 kb on - strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.733 kb on + strand at 47.733 kb on + strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.742 kb on + strand at 47.743 kb on - strand at 47.819 kb on + strand at 47.819 kb on + strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.835 kb on + strand at 47.836 kb on - strand at 47.836 kb on - strand at 47.852 kb on - strand at 47.852 kb on - strand at 47.861 kb on + strand at 47.862 kb on - strand at 47.870 kb on + strand at 47.925 kb on + strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.973 kb on - strand at 47.973 kb on - strand at 47.998 kb on + strand at 47.998 kb on + strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 48.000 kb on + strand at 48.001 kb on - strand at 48.001 kb on - strand at 48.017 kb on + strand at 48.017 kb on + strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.043 kb on + strand at 48.044 kb on - strand at 48.044 kb on - strand at 48.072 kb on + strand at 48.072 kb on + strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.084 kb on - strand at 48.084 kb on - strand at 48.090 kb on + strand at 48.105 kb on + strand, within DZA65_RS00210 at 48.105 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.109 kb on - strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.184 kb on - strand, within DZA65_RS00210 at 48.228 kb on + strand, within DZA65_RS00210 at 48.229 kb on - strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.607 kb on + strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.776 kb on + strand at 48.776 kb on + strand at 48.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 46,223 + -0.6 46,245 + +0.3 46,246 - +0.6 46,246 - +0.7 46,246 - +0.7 46,340 + +0.4 46,340 + -0.1 46,341 - +0.5 46,351 - +0.6 46,375 + +1.2 46,375 + -0.4 46,375 + +0.2 46,375 + -0.7 46,375 + -0.1 46,375 + -0.3 46,376 - -1.0 46,409 + -0.7 46,409 + -0.2 46,409 + -0.3 46,432 + -0.6 46,432 + +0.1 46,433 - +0.7 46,440 - -0.6 46,649 - +1.2 46,649 - +0.6 46,676 + +0.7 46,676 + +1.2 46,676 + -1.2 46,676 + +2.7 46,676 + +1.0 46,676 + -0.8 46,676 + -0.4 46,677 - -1.5 46,677 - +0.2 46,687 + +0.2 46,687 + +0.7 46,687 + +0.4 46,687 + -0.7 46,688 - -1.4 46,688 - +0.2 46,688 - +0.4 46,688 - +0.3 46,688 - +1.0 46,688 - -1.8 46,692 + -1.2 46,692 + +0.3 46,693 - -2.0 46,716 + -1.8 46,716 + -0.7 46,716 + +3.2 46,716 + -0.3 46,716 + -0.6 46,716 + -0.3 46,716 + -0.4 46,717 - -1.8 46,717 - -0.8 46,717 - -2.3 46,717 - -0.9 46,717 - +1.9 46,718 + -1.7 46,736 - +0.2 46,812 - +0.5 46,843 + DZA65_RS00200 0.17 -0.7 46,843 + DZA65_RS00200 0.17 -1.0 46,843 + DZA65_RS00200 0.17 +1.1 46,843 + DZA65_RS00200 0.17 +0.7 46,843 + DZA65_RS00200 0.17 -1.8 46,844 - DZA65_RS00200 0.17 +0.2 46,844 - DZA65_RS00200 0.17 -1.2 46,860 - DZA65_RS00200 0.20 +0.0 46,862 + DZA65_RS00200 0.21 +0.0 46,863 - DZA65_RS00200 0.21 +0.1 46,863 - DZA65_RS00200 0.21 -0.4 46,863 - DZA65_RS00200 0.21 -0.8 46,863 - DZA65_RS00200 0.21 +0.3 46,863 - DZA65_RS00200 0.21 +1.2 46,879 + DZA65_RS00200 0.25 -0.2 46,879 + +0.2 46,879 + DZA65_RS00200 0.25 +0.3 46,879 + DZA65_RS00200 0.25 -0.5 46,880 - DZA65_RS00200 0.25 -0.8 46,880 - DZA65_RS00200 0.25 +0.2 46,880 - DZA65_RS00200 0.25 +0.0 46,880 - DZA65_RS00200 0.25 +1.0 46,909 + DZA65_RS00200 0.31 +0.9 46,909 + DZA65_RS00200 0.31 +1.2 46,910 - DZA65_RS00200 0.31 -2.1 46,910 - DZA65_RS00200 0.31 +0.2 46,910 - DZA65_RS00200 0.31 +1.2 46,910 - DZA65_RS00200 0.31 -1.3 46,946 + DZA65_RS00200 0.39 +0.4 46,946 + DZA65_RS00200 0.39 -0.0 46,946 + DZA65_RS00200 0.39 +1.6 46,989 - DZA65_RS00200 0.49 +0.6 46,989 - DZA65_RS00200 0.49 -0.3 47,065 + DZA65_RS00200 0.65 +1.0 47,065 + DZA65_RS00200 0.65 +1.9 47,065 + DZA65_RS00200 0.65 +0.6 47,065 + DZA65_RS00200 0.65 -1.1 47,092 + DZA65_RS00200 0.71 -0.4 47,092 + DZA65_RS00200 0.71 +0.0 47,093 - DZA65_RS00200 0.71 -0.5 47,093 - DZA65_RS00200 0.71 +0.3 47,141 + DZA65_RS00200 0.82 +1.4 47,142 - DZA65_RS00200 0.82 -2.4 47,176 - DZA65_RS00200 0.90 -3.2 47,176 - DZA65_RS00200 0.90 +0.3 47,285 - DZA65_RS00205 0.12 -0.8 47,312 - DZA65_RS00205 0.17 +1.2 47,405 - DZA65_RS00205 0.33 +1.9 47,434 + DZA65_RS00205 0.38 +1.4 47,434 + DZA65_RS00205 0.38 -0.1 47,434 + DZA65_RS00205 0.38 -0.6 47,434 + DZA65_RS00205 0.38 +1.7 47,435 - DZA65_RS00205 0.39 -0.4 47,435 - DZA65_RS00205 0.39 -1.3 47,495 - DZA65_RS00205 0.49 +0.6 47,497 + DZA65_RS00205 0.50 -0.4 47,497 + DZA65_RS00205 0.50 +0.2 47,497 + DZA65_RS00205 0.50 +0.2 47,497 + DZA65_RS00205 0.50 -1.4 47,497 + DZA65_RS00205 0.50 -0.3 47,498 - DZA65_RS00205 0.50 +0.2 47,498 - DZA65_RS00205 0.50 +1.6 47,498 - DZA65_RS00205 0.50 -0.3 47,498 - DZA65_RS00205 0.50 +0.2 47,498 - DZA65_RS00205 0.50 +1.3 47,522 + DZA65_RS00205 0.54 -1.4 47,522 + DZA65_RS00205 0.54 -1.7 47,523 - DZA65_RS00205 0.54 +2.2 47,523 - DZA65_RS00205 0.54 +0.7 47,523 - DZA65_RS00205 0.54 -0.2 47,523 - DZA65_RS00205 0.54 +1.5 47,733 + +0.2 47,733 + -0.7 47,734 - +0.6 47,734 - +1.5 47,734 - +1.2 47,734 - +1.2 47,734 - -0.4 47,734 - +0.7 47,742 + +1.2 47,743 - -1.8 47,819 + +0.2 47,819 + -0.7 47,820 - +1.7 47,820 - +0.5 47,820 - -0.3 47,835 + -1.2 47,836 - -0.8 47,836 - +1.7 47,852 - +1.2 47,852 - -0.5 47,861 + -0.4 47,862 - +1.7 47,870 + +0.6 47,925 + +0.1 47,926 - +0.3 47,926 - -0.4 47,926 - -0.4 47,972 + +2.8 47,972 + -0.8 47,972 + -1.2 47,973 - -0.4 47,973 - +1.5 47,998 + -0.1 47,998 + +0.8 47,999 - +0.2 47,999 - -0.8 47,999 - +0.6 47,999 - -1.3 48,000 + -1.7 48,001 - -1.3 48,001 - +1.2 48,017 + +0.4 48,017 + -0.2 48,018 - +1.4 48,018 - +2.2 48,018 - -0.2 48,043 + -0.8 48,044 - +1.2 48,044 - -1.2 48,072 + +0.2 48,072 + +0.1 48,073 - +0.5 48,073 - +1.2 48,073 - +1.2 48,084 - +0.2 48,084 - +0.0 48,090 + +1.0 48,105 + DZA65_RS00210 0.11 +1.8 48,105 + DZA65_RS00210 0.11 +0.0 48,108 + DZA65_RS00210 0.11 -0.1 48,108 + DZA65_RS00210 0.11 -0.1 48,108 + DZA65_RS00210 0.11 +0.7 48,108 + DZA65_RS00210 0.11 +2.2 48,108 + DZA65_RS00210 0.11 -1.4 48,109 - DZA65_RS00210 0.11 -2.2 48,183 + DZA65_RS00210 0.20 -0.2 48,183 + DZA65_RS00210 0.20 -0.4 48,183 + DZA65_RS00210 0.20 -1.2 48,183 + DZA65_RS00210 0.20 +1.0 48,183 + DZA65_RS00210 0.20 -1.3 48,184 - DZA65_RS00210 0.20 +2.2 48,228 + DZA65_RS00210 0.26 -1.2 48,229 - DZA65_RS00210 0.26 +2.2 48,373 + DZA65_RS00210 0.44 +0.9 48,373 + DZA65_RS00210 0.44 -0.6 48,373 + DZA65_RS00210 0.44 -0.8 48,373 + DZA65_RS00210 0.44 -0.7 48,373 + DZA65_RS00210 0.44 +0.5 48,373 + DZA65_RS00210 0.44 -0.1 48,373 + DZA65_RS00210 0.44 +1.2 48,374 - DZA65_RS00210 0.44 -1.2 48,374 - DZA65_RS00210 0.44 -0.8 48,374 - DZA65_RS00210 0.44 -1.7 48,374 - DZA65_RS00210 0.44 -1.2 48,374 - DZA65_RS00210 0.44 +0.8 48,374 - DZA65_RS00210 0.44 -0.4 48,374 - DZA65_RS00210 0.44 -0.1 48,607 + DZA65_RS00210 0.73 +0.2 48,608 - DZA65_RS00210 0.73 +1.0 48,608 - DZA65_RS00210 0.73 -0.4 48,608 - DZA65_RS00210 0.73 -0.2 48,608 - DZA65_RS00210 0.73 -0.3 48,608 - DZA65_RS00210 0.73 +1.0 48,608 - DZA65_RS00210 0.73 -1.2 48,658 + DZA65_RS00210 0.79 +0.6 48,658 + DZA65_RS00210 0.79 -0.6 48,658 + DZA65_RS00210 0.79 -0.8 48,658 + DZA65_RS00210 0.79 +0.2 48,658 + DZA65_RS00210 0.79 +1.7 48,658 + DZA65_RS00210 0.79 -1.8 48,659 - DZA65_RS00210 0.79 +0.2 48,659 - DZA65_RS00210 0.79 -0.7 48,659 - DZA65_RS00210 0.79 +1.5 48,776 + +0.3 48,776 + -0.5 48,776 + +0.8
Or see this region's nucleotide sequence