Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21940

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,745,173	+				+0.1
4,745,173	+		DZA65_RS21935	0.58	+1.9
4,745,173	+		DZA65_RS21935	0.58	+0.4
4,745,174	-		DZA65_RS21935	0.58	-2.6
4,745,174	-		DZA65_RS21935	0.58	+2.7
4,745,271	+		DZA65_RS21935	0.64	-0.9
4,745,271	+		DZA65_RS21935	0.64	+0.3
4,745,271	+		DZA65_RS21935	0.64	-2.7
4,745,271	+		DZA65_RS21935	0.64	+0.7
4,745,272	-		DZA65_RS21935	0.64	-0.9
4,745,272	-		DZA65_RS21935	0.64	+0.7
4,745,398	+		DZA65_RS21935	0.72	-0.4
4,745,399	-		DZA65_RS21935	0.72	-2.5
4,745,399	-		DZA65_RS21935	0.72	-1.7
4,745,399	-		DZA65_RS21935	0.72	-0.2
4,745,464	+		DZA65_RS21935	0.76	-0.7
4,745,491	-		DZA65_RS21935	0.78	+1.5
4,745,506	+		DZA65_RS21935	0.79	-0.5
4,745,551	+		DZA65_RS21935	0.82	+0.9
4,745,591	-		DZA65_RS21935	0.84	-1.1
4,745,621	+		DZA65_RS21935	0.86	-2.5
4,745,622	-		DZA65_RS21935	0.86	-0.2
4,745,674	+		DZA65_RS21935	0.89	+0.5
4,745,879	+				-1.5
4,745,879	+				+1.7
4,745,880	-				+0.1
4,745,880	-				-1.9
4,745,880	-				-0.5
4,745,884	+				-1.2
4,745,969	+				+0.3
4,745,969	+				-1.3
4,745,969	+				-1.5
4,745,969	+				-1.2
4,745,969	+				-2.0
4,745,970	-				-0.9
4,745,970	-				-0.5
4,745,970	-				-1.5
4,746,002	+				-1.5
4,746,002	+				+1.7
4,746,002	+				-0.9
4,746,002	+				-0.9
4,746,002	+				-0.2
4,746,002	+				+1.0
4,746,002	+				-0.4
4,746,002	+				-1.1
4,746,002	+				-0.9
4,746,002	+				-2.9
4,746,002	+				+1.3
4,746,002	+				-0.5
4,746,002	+				-0.2
4,746,002	+				-0.6
4,746,002	+				-2.8
4,746,002	+				-1.2
4,746,002	+				-1.2
4,746,003	-				+0.4
4,746,003	-				+3.3
4,746,003	-				-0.6
4,746,003	-				+1.3
4,746,003	-				-0.5
4,746,003	-				+0.5
4,746,003	-				+0.5
4,746,003	-				-1.2
4,746,003	-				+0.7
4,746,003	-				-0.7
4,746,003	-				-0.1
4,746,003	-				+2.3
4,746,005	+				-0.0
4,746,005	+				-0.9
4,746,006	-				+0.8
4,746,006	-				+1.0
4,746,085	+				-0.6
4,746,085	+				+0.1
4,746,085	+				+1.9
4,746,086	-				+1.9
4,746,086	-				+1.4
4,746,113	+				-2.4
4,746,114	-				-0.9
4,746,114	-				-1.0
4,746,114	-				-2.0
4,746,152	+		DZA65_RS21940	0.10	+1.1
4,746,152	+		DZA65_RS21940	0.10	-1.5
4,746,152	+		DZA65_RS21940	0.10	+1.8
4,746,168	+		DZA65_RS21940	0.12	+0.3
4,746,254	+		DZA65_RS21940	0.18	+0.5
4,746,254	+		DZA65_RS21940	0.18	-1.2
4,746,254	+		DZA65_RS21940	0.18	-2.0
4,746,254	+		DZA65_RS21940	0.18	-2.3
4,746,254	+		DZA65_RS21940	0.18	-0.5
4,746,254	+		DZA65_RS21940	0.18	+0.7
4,746,254	+		DZA65_RS21940	0.18	+1.7
4,746,254	+		DZA65_RS21940	0.18	+1.1
4,746,254	+		DZA65_RS21940	0.18	+0.2
4,746,255	-		DZA65_RS21940	0.18	+2.5
4,746,255	-		DZA65_RS21940	0.18	+0.8
4,746,255	-		DZA65_RS21940	0.18	-0.5
4,746,293	+		DZA65_RS21940	0.20	-1.5
4,746,293	+		DZA65_RS21940	0.20	+0.5
4,746,293	+		DZA65_RS21940	0.20	+1.1
4,746,293	+		DZA65_RS21940	0.20	+0.3
4,746,294	-		DZA65_RS21940	0.21	+0.1
4,746,294	-		DZA65_RS21940	0.21	+1.8
4,746,302	+		DZA65_RS21940	0.21	+0.1
4,746,302	+		DZA65_RS21940	0.21	+0.0
4,746,302	+		DZA65_RS21940	0.21	-2.1
4,746,302	+		DZA65_RS21940	0.21	+0.1
4,746,302	+		DZA65_RS21940	0.21	+0.9
4,746,302	+		DZA65_RS21940	0.21	+0.1
4,746,302	+		DZA65_RS21940	0.21	+1.0
4,746,302	+		DZA65_RS21940	0.21	-1.0
4,746,302	+		DZA65_RS21940	0.21	-2.0
4,746,303	-		DZA65_RS21940	0.21	-2.3
4,746,303	-		DZA65_RS21940	0.21	-0.5
4,746,303	-		DZA65_RS21940	0.21	+0.1
4,746,303	-		DZA65_RS21940	0.21	+2.1
4,746,303	-		DZA65_RS21940	0.21	-0.9
4,746,303	-		DZA65_RS21940	0.21	-0.3
4,746,305	+		DZA65_RS21940	0.21	+0.9
4,746,305	+		DZA65_RS21940	0.21	+0.9
4,746,305	+		DZA65_RS21940	0.21	+2.4
4,746,305	+		DZA65_RS21940	0.21	+1.7
4,746,305	+		DZA65_RS21940	0.21	+1.1
4,746,305	+		DZA65_RS21940	0.21	-1.7
4,746,306	-		DZA65_RS21940	0.21	+0.1
4,746,306	-		DZA65_RS21940	0.21	+0.0
4,746,306	-		DZA65_RS21940	0.21	+0.4
4,746,306	-		DZA65_RS21940	0.21	-0.7
4,746,306	-		DZA65_RS21940	0.21	+0.5
4,746,306	-		DZA65_RS21940	0.21	-1.7
4,746,306	-		DZA65_RS21940	0.21	+1.9
4,746,306	-		DZA65_RS21940	0.21	+1.1
4,746,308	+		DZA65_RS21940	0.22	+2.5
4,746,308	+		DZA65_RS21940	0.22	-0.0
4,746,308	+		DZA65_RS21940	0.22	-0.9
4,746,308	+		DZA65_RS21940	0.22	+3.1
4,746,308	+		DZA65_RS21940	0.22	-0.5
4,746,309	-		DZA65_RS21940	0.22	-1.5
4,746,309	-		DZA65_RS21940	0.22	+1.1
4,746,309	-		DZA65_RS21940	0.22	-0.2
4,746,309	-		DZA65_RS21940	0.22	+1.1
4,746,309	-		DZA65_RS21940	0.22	-0.1
4,746,475	+		DZA65_RS21940	0.33	-1.2
4,746,475	+		DZA65_RS21940	0.33	+1.1
4,746,475	+		DZA65_RS21940	0.33	+1.4
4,746,475	+		DZA65_RS21940	0.33	+1.6
4,746,475	+		DZA65_RS21940	0.33	+0.6
4,746,475	+		DZA65_RS21940	0.33	-1.2
4,746,476	-				-1.9
4,746,476	-		DZA65_RS21940	0.33	+1.5
4,746,476	-		DZA65_RS21940	0.33	-0.5
4,746,649	+		DZA65_RS21940	0.46	-1.7
4,746,649	+		DZA65_RS21940	0.46	-0.2
4,746,649	+		DZA65_RS21940	0.46	-0.7
4,746,649	+		DZA65_RS21940	0.46	-0.7
4,746,649	+		DZA65_RS21940	0.46	-1.5
4,746,649	+		DZA65_RS21940	0.46	+1.0
4,746,649	+		DZA65_RS21940	0.46	+2.0
4,746,650	-		DZA65_RS21940	0.46	+0.4
4,746,650	-		DZA65_RS21940	0.46	-1.2
4,746,650	-		DZA65_RS21940	0.46	+0.1
4,746,650	-		DZA65_RS21940	0.46	-1.2
4,746,650	-		DZA65_RS21940	0.46	+2.0
4,746,650	-		DZA65_RS21940	0.46	+1.1
4,746,650	-		DZA65_RS21940	0.46	-1.2
4,746,650	-		DZA65_RS21940	0.46	+1.2
4,746,699	-		DZA65_RS21940	0.49	+0.8
4,746,707	+		DZA65_RS21940	0.50	-1.0
4,746,834	+		DZA65_RS21940	0.59	+0.8
4,746,972	+		DZA65_RS21940	0.69	+0.0
4,746,972	+				+3.6
4,746,973	-		DZA65_RS21940	0.69	+0.0
4,747,043	+		DZA65_RS21940	0.74	+0.4
4,747,043	+		DZA65_RS21940	0.74	-1.3
4,747,044	-		DZA65_RS21940	0.74	-1.7
4,747,120	-		DZA65_RS21940	0.79	+0.5
4,747,297	+				-2.2
4,747,297	+				+0.1
4,747,297	+				+0.1
4,747,297	+				+3.1
4,747,298	-				-0.5
4,747,320	+				+1.0
4,747,357	+				+0.2
4,747,357	+				+0.9
4,747,357	+				-0.3
4,747,357	+				-0.9
4,747,358	-				+1.9
4,747,358	-				+0.9
4,747,358	-				-1.5
4,747,360	-				+0.5
4,747,380	+				+0.5
4,747,380	+				-0.4
4,747,381	-				+0.3
4,747,381	-				-1.2
4,747,404	+				+0.1
4,747,416	+				-0.5
4,747,416	+				+1.7
4,747,416	+				+1.8
4,747,416	+				-1.7
4,747,417	-				+0.1
4,747,417	-				+0.8
4,747,417	-				+1.3
4,747,417	-				-0.2
4,747,435	+				+0.6
4,747,435	+				-0.3
4,747,436	-				+0.3
4,747,457	-				+0.2
4,747,510	+				-1.2
4,747,578	+				-0.4
4,747,588	+				-2.6
4,747,588	+				-1.1
4,747,637	-				+0.9
4,747,702	-				-1.7
4,747,702	-				-0.6
4,747,703	+				-1.9
4,747,704	-				-0.0
4,747,734	+				-0.9
4,747,734	+				+1.1
4,747,738	-				-1.2
4,747,751	-				+1.7
4,747,803	-				-2.5
4,747,851	-				-1.2
4,747,853	+				-1.2
4,747,854	-				+1.9
4,747,864	-				+0.9
4,747,975	+				-1.9
4,747,984	+				-0.5
4,747,989	+				+0.4
4,747,989	+				+1.8
4,747,996	+				+2.3
4,748,018	+				+0.5
4,748,088	-				-1.4
4,748,109	-				-0.3
4,748,115	+				+0.9
4,748,115	+				-1.7
4,748,115	+				-0.9
4,748,121	-				+1.4
4,748,204	+				-0.8
4,748,205	-				-0.9
4,748,213	-				+1.9
4,748,240	+				+0.3
4,748,240	+				+1.5
4,748,240	+				+0.9
4,748,241	-				-0.5
4,748,241	-				+1.1
4,748,416	+		DZA65_RS21950	0.46	-1.9
4,748,416	+		DZA65_RS21950	0.46	+0.3
4,748,416	+		DZA65_RS21950	0.46	-1.2
4,748,416	+		DZA65_RS21950	0.46	-1.3
4,748,416	+		DZA65_RS21950	0.46	-0.5
4,748,416	+		DZA65_RS21950	0.46	-0.9
4,748,416	+		DZA65_RS21950	0.46	-0.6
4,748,416	+		DZA65_RS21950	0.46	-0.9
4,748,416	+		DZA65_RS21950	0.46	+0.1