Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20895

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,511,966	+				-1.5
4,511,966	+				+0.5
4,511,967	-				-0.9
4,512,019	-				+0.6
4,512,055	+				+0.1
4,512,198	-		DZA65_RS20890	0.27	+1.1
4,512,226	-		DZA65_RS20890	0.30	+0.8
4,512,475	-		DZA65_RS20890	0.63	-1.9
4,512,698	+				+1.1
4,512,699	-				+2.1
4,512,796	+				+0.5
4,512,796	+				-0.7
4,512,797	-				+1.1
4,512,797	-				+1.7
4,512,840	+				-0.5
4,512,841	-				-0.3
4,512,848	-				-0.4
4,512,866	+				+0.1
4,512,866	+				+1.3
4,512,867	-				+1.1
4,512,867	-				-0.5
4,512,867	-				-0.7
4,512,880	+				-0.5
4,512,881	-				+1.1
4,512,887	+				-0.9
4,512,888	-				+1.0
4,512,888	-				-0.8
4,512,888	-				+0.5
4,512,918	-				+0.6
4,513,000	+		DZA65_RS20895	0.12	+3.0
4,513,093	+		DZA65_RS20895	0.24	-0.3
4,513,093	+		DZA65_RS20895	0.24	+1.3
4,513,093	+		DZA65_RS20895	0.24	+0.7
4,513,093	+		DZA65_RS20895	0.24	-1.5
4,513,094	-		DZA65_RS20895	0.24	+1.1
4,513,094	-		DZA65_RS20895	0.24	+1.8
4,513,094	-		DZA65_RS20895	0.24	-1.5
4,513,094	-		DZA65_RS20895	0.24	+1.1
4,513,094	-		DZA65_RS20895	0.24	-0.5
4,513,108	+				-1.2
4,513,108	+		DZA65_RS20895	0.26	+1.2
4,513,108	+		DZA65_RS20895	0.26	-0.9
4,513,108	+		DZA65_RS20895	0.26	+0.1
4,513,108	+		DZA65_RS20895	0.26	-1.0
4,513,109	-		DZA65_RS20895	0.26	+0.3
4,513,109	-		DZA65_RS20895	0.26	-3.1
4,513,109	-		DZA65_RS20895	0.26	-0.6
4,513,135	+		DZA65_RS20895	0.29	-0.7
4,513,135	+		DZA65_RS20895	0.29	-0.9
4,513,135	+		DZA65_RS20895	0.29	-0.5
4,513,136	-		DZA65_RS20895	0.29	+0.2
4,513,136	-		DZA65_RS20895	0.29	+1.1
4,513,159	-		DZA65_RS20895	0.32	-0.7
4,513,159	-		DZA65_RS20895	0.32	-0.6
4,513,243	+		DZA65_RS20895	0.42	+0.7
4,513,243	+		DZA65_RS20895	0.42	-0.7
4,513,243	+		DZA65_RS20895	0.42	+2.1
4,513,244	-		DZA65_RS20895	0.42	+0.5
4,513,351	-		DZA65_RS20895	0.55	-1.9
4,513,371	+		DZA65_RS20895	0.57	-1.5
4,513,371	+		DZA65_RS20895	0.57	-1.7
4,513,396	+		DZA65_RS20895	0.60	-1.2
4,513,396	+		DZA65_RS20895	0.60	-0.9
4,513,396	+		DZA65_RS20895	0.60	-1.8
4,513,397	-		DZA65_RS20895	0.61	+1.1
4,513,465	+		DZA65_RS20895	0.69	+0.7
4,513,466	-		DZA65_RS20895	0.69	+2.0
4,513,529	-		DZA65_RS20895	0.77	+0.3
4,513,632	-		DZA65_RS20895	0.89	-0.8
4,513,664	+				-0.9
4,513,664	+				-0.2
4,513,664	+				+1.7
4,513,664	+				-0.9
4,513,664	+				+0.1
4,513,664	+				+0.1
4,513,664	+				-1.7
4,513,664	+				-0.5
4,513,664	+				+1.1
4,513,664	+				-0.2
4,513,664	+				-0.0
4,513,665	-				+1.7
4,513,665	-				+0.7
4,513,665	-				-0.3
4,513,665	-				+0.8
4,513,665	-				-2.6
4,513,665	-				+0.4
4,513,665	-				+0.1
4,513,665	-				-0.1
4,513,665	-				-0.4
4,513,665	-				-1.3
4,513,665	-				+0.1
4,513,665	-				+1.2
4,513,665	-				+1.2
4,513,665	-				+2.4
4,513,665	-				-0.5
4,513,665	-				+1.4
4,513,665	-				-0.5
4,513,665	-				+0.1
4,513,665	-				-0.2
4,513,665	-				+2.7
4,513,665	-				+0.5
4,513,665	-				+0.9
4,513,665	-				+1.8
4,513,666	+				-0.6
4,513,666	+				-1.2
4,513,666	+				-0.5
4,513,666	+				-1.8
4,513,666	+				+1.1
4,513,667	-				-1.5
4,513,667	-				-0.9
4,513,667	-				+2.7
4,513,667	-				+0.6
4,513,667	-				+0.1
4,513,667	-				+0.3
4,513,667	-				-0.2
4,513,728	-				-2.1
4,513,728	-				+0.5
4,513,755	-				+0.3
4,513,755	-				+1.1
4,513,755	-				+0.7
4,513,768	+				-1.5
4,513,769	-				-1.7
4,513,778	-				-0.9
4,513,778	-				+2.6
4,513,819	+				+0.4
4,513,819	+				-2.1
4,513,820	-				+0.6
4,513,820	-				+0.5
4,513,828	+				+0.8
4,513,828	+				-0.0
4,513,828	+				+0.7
4,513,878	+				-0.5
4,513,941	+		DZA65_RS20900	0.20	+0.9
4,513,942	-		DZA65_RS20900	0.20	+0.1
4,513,942	-		DZA65_RS20900	0.20	-2.1
4,513,942	-		DZA65_RS20900	0.20	-0.3
4,513,942	-		DZA65_RS20900	0.20	-2.1
4,513,942	-		DZA65_RS20900	0.20	+1.7
4,513,942	-		DZA65_RS20900	0.20	+0.7
4,513,942	-		DZA65_RS20900	0.20	-1.7
4,513,944	-		DZA65_RS20900	0.21	-0.3
4,513,963	+		DZA65_RS20900	0.27	+0.3
4,513,964	-		DZA65_RS20900	0.27	+1.7
4,513,964	-		DZA65_RS20900	0.27	+0.2
4,513,984	+		DZA65_RS20900	0.33	-1.5
4,514,004	+		DZA65_RS20900	0.40	+0.5
4,514,004	+		DZA65_RS20900	0.40	-1.1
4,514,004	+		DZA65_RS20900	0.40	+1.4
4,514,005	-		DZA65_RS20900	0.40	+1.1
4,514,126	-		DZA65_RS20900	0.78	+0.8
4,514,126	-		DZA65_RS20900	0.78	+0.4
4,514,126	-		DZA65_RS20900	0.78	+0.7
4,514,161	-		DZA65_RS20900	0.88	-2.1
4,514,161	-		DZA65_RS20900	0.88	-0.8
4,514,209	+				-0.9
4,514,220	-				+0.3
4,514,241	+				+2.1
4,514,242	-				+0.6
4,514,264	+				-1.2
4,514,264	+				-1.1
4,514,264	+				+3.4
4,514,264	+				-0.6
4,514,265	-				+2.2
4,514,308	+				+2.7
4,514,309	-				-2.3
4,514,309	-				+1.3
4,514,309	-				-0.5
4,514,309	-				+0.5
4,514,348	-				-0.3
4,514,356	+				-2.7
4,514,356	+				+0.6
4,514,356	+				+0.1
4,514,356	+				+1.9
4,514,356	+				-0.5
4,514,357	-				-0.2
4,514,357	-				+1.3
4,514,357	-				+0.2
4,514,357	-				+1.1
4,514,357	-				+1.2
4,514,357	-				+2.4
4,514,362	+				+0.1
4,514,412	-				-1.3
4,514,412	-				-2.2
4,514,508	+				-0.7
4,514,508	+				-0.9
4,514,508	+				+1.0
4,514,508	+				+0.5