Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19730 and DZA65_RS19735 are separated by 49 nucleotides DZA65_RS19735 and DZA65_RS19740 are separated by 3 nucleotides DZA65_RS19740 and DZA65_RS19745 are separated by 10 nucleotides
DZA65_RS19730: DZA65_RS19730 - GDP-mannose 4,6-dehydratase, at 4,273,396 to 4,274,514
_RS19730
DZA65_RS19735: DZA65_RS19735 - ABC transporter permease, at 4,274,564 to 4,275,352
_RS19735
DZA65_RS19740: DZA65_RS19740 - ABC transporter ATP-binding protein, at 4,275,356 to 4,276,087
_RS19740
DZA65_RS19745: DZA65_RS19745 - GDP-L-fucose synthase, at 4,276,098 to 4,277,036
_RS19745
Position (kb) 4274
4275
4276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4273.579 kb on + strand, within DZA65_RS19730 at 4273.589 kb on + strand, within DZA65_RS19730 at 4273.596 kb on + strand, within DZA65_RS19730 at 4273.596 kb on + strand, within DZA65_RS19730 at 4273.596 kb on + strand, within DZA65_RS19730 at 4273.596 kb on + strand, within DZA65_RS19730 at 4273.596 kb on + strand, within DZA65_RS19730 at 4273.597 kb on - strand, within DZA65_RS19730 at 4273.614 kb on + strand, within DZA65_RS19730 at 4273.615 kb on - strand, within DZA65_RS19730 at 4273.615 kb on - strand, within DZA65_RS19730 at 4273.617 kb on + strand, within DZA65_RS19730 at 4273.618 kb on - strand, within DZA65_RS19730 at 4273.696 kb on + strand, within DZA65_RS19730 at 4273.697 kb on - strand, within DZA65_RS19730 at 4273.697 kb on - strand, within DZA65_RS19730 at 4273.698 kb on + strand, within DZA65_RS19730 at 4273.698 kb on + strand, within DZA65_RS19730 at 4273.698 kb on + strand, within DZA65_RS19730 at 4273.698 kb on + strand, within DZA65_RS19730 at 4273.699 kb on - strand, within DZA65_RS19730 at 4273.744 kb on - strand, within DZA65_RS19730 at 4273.744 kb on - strand, within DZA65_RS19730 at 4273.744 kb on - strand, within DZA65_RS19730 at 4273.744 kb on - strand, within DZA65_RS19730 at 4273.802 kb on + strand, within DZA65_RS19730 at 4273.802 kb on + strand, within DZA65_RS19730 at 4273.802 kb on + strand, within DZA65_RS19730 at 4273.802 kb on + strand, within DZA65_RS19730 at 4273.802 kb on + strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.803 kb on - strand, within DZA65_RS19730 at 4273.805 kb on - strand, within DZA65_RS19730 at 4273.883 kb on - strand, within DZA65_RS19730 at 4273.883 kb on - strand, within DZA65_RS19730 at 4273.883 kb on - strand, within DZA65_RS19730 at 4273.888 kb on + strand, within DZA65_RS19730 at 4273.896 kb on + strand, within DZA65_RS19730 at 4273.897 kb on - strand, within DZA65_RS19730 at 4273.901 kb on + strand, within DZA65_RS19730 at 4273.902 kb on - strand, within DZA65_RS19730 at 4273.902 kb on - strand, within DZA65_RS19730 at 4273.902 kb on - strand, within DZA65_RS19730 at 4273.906 kb on + strand, within DZA65_RS19730 at 4273.919 kb on - strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.927 kb on + strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.928 kb on - strand, within DZA65_RS19730 at 4273.992 kb on + strand, within DZA65_RS19730 at 4274.044 kb on + strand, within DZA65_RS19730 at 4274.044 kb on + strand, within DZA65_RS19730 at 4274.044 kb on + strand, within DZA65_RS19730 at 4274.044 kb on + strand, within DZA65_RS19730 at 4274.045 kb on - strand, within DZA65_RS19730 at 4274.045 kb on - strand, within DZA65_RS19730 at 4274.045 kb on - strand, within DZA65_RS19730 at 4274.045 kb on - strand, within DZA65_RS19730 at 4274.092 kb on + strand, within DZA65_RS19730 at 4274.092 kb on + strand, within DZA65_RS19730 at 4274.093 kb on - strand, within DZA65_RS19730 at 4274.093 kb on - strand, within DZA65_RS19730 at 4274.164 kb on + strand, within DZA65_RS19730 at 4274.165 kb on - strand, within DZA65_RS19730 at 4274.171 kb on + strand, within DZA65_RS19730 at 4274.171 kb on + strand, within DZA65_RS19730 at 4274.171 kb on + strand, within DZA65_RS19730 at 4274.171 kb on + strand, within DZA65_RS19730 at 4274.171 kb on + strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.172 kb on - strand, within DZA65_RS19730 at 4274.255 kb on + strand, within DZA65_RS19730 at 4274.274 kb on + strand, within DZA65_RS19730 at 4274.274 kb on + strand, within DZA65_RS19730 at 4274.275 kb on - strand, within DZA65_RS19730 at 4274.294 kb on + strand, within DZA65_RS19730 at 4274.294 kb on + strand, within DZA65_RS19730 at 4274.294 kb on + strand, within DZA65_RS19730 at 4274.295 kb on - strand, within DZA65_RS19730 at 4274.295 kb on - strand, within DZA65_RS19730 at 4274.309 kb on + strand, within DZA65_RS19730 at 4274.309 kb on + strand, within DZA65_RS19730 at 4274.310 kb on - strand, within DZA65_RS19730 at 4274.310 kb on - strand, within DZA65_RS19730 at 4274.310 kb on - strand, within DZA65_RS19730 at 4274.313 kb on + strand, within DZA65_RS19730 at 4274.313 kb on + strand, within DZA65_RS19730 at 4274.314 kb on - strand, within DZA65_RS19730 at 4274.326 kb on + strand, within DZA65_RS19730 at 4274.327 kb on - strand, within DZA65_RS19730 at 4274.440 kb on + strand at 4274.441 kb on - strand at 4274.441 kb on - strand at 4274.507 kb on + strand at 4274.508 kb on - strand at 4274.648 kb on - strand, within DZA65_RS19735 at 4274.658 kb on - strand at 4274.804 kb on + strand at 4274.804 kb on + strand, within DZA65_RS19735 at 4274.806 kb on + strand, within DZA65_RS19735 at 4274.806 kb on + strand, within DZA65_RS19735 at 4274.806 kb on + strand, within DZA65_RS19735 at 4274.807 kb on - strand, within DZA65_RS19735 at 4274.808 kb on + strand, within DZA65_RS19735 at 4274.809 kb on - strand, within DZA65_RS19735 at 4274.860 kb on - strand, within DZA65_RS19735 at 4274.920 kb on + strand, within DZA65_RS19735 at 4274.951 kb on - strand, within DZA65_RS19735 at 4275.009 kb on + strand, within DZA65_RS19735 at 4275.058 kb on - strand, within DZA65_RS19735 at 4275.058 kb on - strand, within DZA65_RS19735 at 4275.066 kb on + strand, within DZA65_RS19735 at 4275.066 kb on + strand, within DZA65_RS19735 at 4275.066 kb on + strand, within DZA65_RS19735 at 4275.067 kb on - strand, within DZA65_RS19735 at 4275.067 kb on - strand, within DZA65_RS19735 at 4275.085 kb on + strand, within DZA65_RS19735 at 4275.177 kb on - strand, within DZA65_RS19735 at 4275.184 kb on - strand, within DZA65_RS19735 at 4275.284 kb on - strand at 4275.353 kb on + strand at 4275.354 kb on - strand at 4275.404 kb on + strand at 4275.404 kb on + strand at 4275.404 kb on + strand at 4275.405 kb on - strand at 4275.482 kb on + strand, within DZA65_RS19740 at 4275.482 kb on + strand, within DZA65_RS19740 at 4275.483 kb on - strand, within DZA65_RS19740 at 4275.483 kb on - strand, within DZA65_RS19740 at 4275.483 kb on - strand, within DZA65_RS19740 at 4275.506 kb on - strand, within DZA65_RS19740 at 4275.522 kb on + strand, within DZA65_RS19740 at 4275.522 kb on + strand, within DZA65_RS19740 at 4275.522 kb on + strand, within DZA65_RS19740 at 4275.523 kb on - strand, within DZA65_RS19740 at 4275.523 kb on - strand, within DZA65_RS19740 at 4275.550 kb on - strand, within DZA65_RS19740 at 4275.550 kb on - strand, within DZA65_RS19740 at 4275.556 kb on + strand, within DZA65_RS19740 at 4275.574 kb on + strand, within DZA65_RS19740 at 4275.602 kb on + strand, within DZA65_RS19740 at 4275.629 kb on - strand, within DZA65_RS19740 at 4275.629 kb on - strand, within DZA65_RS19740 at 4275.704 kb on + strand, within DZA65_RS19740 at 4275.705 kb on - strand, within DZA65_RS19740 at 4275.705 kb on - strand, within DZA65_RS19740 at 4275.705 kb on - strand, within DZA65_RS19740 at 4275.705 kb on - strand, within DZA65_RS19740 at 4275.706 kb on + strand, within DZA65_RS19740 at 4275.707 kb on - strand, within DZA65_RS19740 at 4275.755 kb on - strand, within DZA65_RS19740 at 4275.762 kb on - strand, within DZA65_RS19740 at 4275.794 kb on - strand, within DZA65_RS19740 at 4275.794 kb on - strand, within DZA65_RS19740 at 4275.794 kb on - strand, within DZA65_RS19740 at 4275.915 kb on - strand, within DZA65_RS19740 at 4275.962 kb on - strand, within DZA65_RS19740 at 4276.071 kb on + strand at 4276.075 kb on + strand at 4276.075 kb on + strand at 4276.121 kb on - strand at 4276.187 kb on + strand at 4276.192 kb on + strand, within DZA65_RS19745 at 4276.205 kb on + strand, within DZA65_RS19745 at 4276.272 kb on + strand, within DZA65_RS19745 at 4276.297 kb on + strand, within DZA65_RS19745 at 4276.350 kb on - strand, within DZA65_RS19745
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,273,579 + DZA65_RS19730 0.16 -2.1 4,273,589 + DZA65_RS19730 0.17 -0.9 4,273,596 + DZA65_RS19730 0.18 -0.7 4,273,596 + DZA65_RS19730 0.18 -3.2 4,273,596 + DZA65_RS19730 0.18 -1.2 4,273,596 + DZA65_RS19730 0.18 +0.1 4,273,596 + DZA65_RS19730 0.18 -2.9 4,273,597 - DZA65_RS19730 0.18 -0.7 4,273,614 + DZA65_RS19730 0.19 -0.8 4,273,615 - DZA65_RS19730 0.20 -2.5 4,273,615 - DZA65_RS19730 0.20 -0.1 4,273,617 + DZA65_RS19730 0.20 -1.2 4,273,618 - DZA65_RS19730 0.20 -0.4 4,273,696 + DZA65_RS19730 0.27 -0.1 4,273,697 - DZA65_RS19730 0.27 +0.5 4,273,697 - DZA65_RS19730 0.27 -1.2 4,273,698 + DZA65_RS19730 0.27 +0.3 4,273,698 + DZA65_RS19730 0.27 -2.0 4,273,698 + DZA65_RS19730 0.27 -4.2 4,273,698 + DZA65_RS19730 0.27 -2.1 4,273,699 - DZA65_RS19730 0.27 -2.1 4,273,744 - DZA65_RS19730 0.31 -1.5 4,273,744 - DZA65_RS19730 0.31 -1.3 4,273,744 - DZA65_RS19730 0.31 -1.4 4,273,744 - DZA65_RS19730 0.31 -1.2 4,273,802 + DZA65_RS19730 0.36 -2.6 4,273,802 + DZA65_RS19730 0.36 -2.2 4,273,802 + DZA65_RS19730 0.36 -1.5 4,273,802 + DZA65_RS19730 0.36 -1.9 4,273,802 + DZA65_RS19730 0.36 +0.5 4,273,803 - DZA65_RS19730 0.36 -0.5 4,273,803 - DZA65_RS19730 0.36 -0.9 4,273,803 - DZA65_RS19730 0.36 -3.3 4,273,803 - DZA65_RS19730 0.36 -0.9 4,273,803 - DZA65_RS19730 0.36 +0.6 4,273,803 - DZA65_RS19730 0.36 -0.1 4,273,805 - DZA65_RS19730 0.37 -0.9 4,273,883 - DZA65_RS19730 0.44 -1.6 4,273,883 - DZA65_RS19730 0.44 +0.1 4,273,883 - DZA65_RS19730 0.44 -1.5 4,273,888 + DZA65_RS19730 0.44 -0.9 4,273,896 + DZA65_RS19730 0.45 -1.1 4,273,897 - DZA65_RS19730 0.45 +1.5 4,273,901 + DZA65_RS19730 0.45 -0.5 4,273,902 - DZA65_RS19730 0.45 -0.5 4,273,902 - DZA65_RS19730 0.45 -0.9 4,273,902 - DZA65_RS19730 0.45 -0.6 4,273,906 + DZA65_RS19730 0.46 -1.1 4,273,919 - DZA65_RS19730 0.47 +0.3 4,273,927 + DZA65_RS19730 0.47 -2.2 4,273,927 + DZA65_RS19730 0.47 -1.8 4,273,927 + DZA65_RS19730 0.47 -1.6 4,273,927 + DZA65_RS19730 0.47 -2.0 4,273,927 + DZA65_RS19730 0.47 -1.5 4,273,927 + DZA65_RS19730 0.47 -1.7 4,273,927 + DZA65_RS19730 0.47 -0.5 4,273,927 + DZA65_RS19730 0.47 -1.4 4,273,927 + DZA65_RS19730 0.47 -1.9 4,273,927 + DZA65_RS19730 0.47 -1.9 4,273,927 + DZA65_RS19730 0.47 -0.9 4,273,927 + DZA65_RS19730 0.47 +1.1 4,273,927 + DZA65_RS19730 0.47 -1.9 4,273,928 - DZA65_RS19730 0.48 -2.1 4,273,928 - DZA65_RS19730 0.48 -0.7 4,273,928 - DZA65_RS19730 0.48 -1.5 4,273,928 - DZA65_RS19730 0.48 +0.5 4,273,928 - DZA65_RS19730 0.48 +0.1 4,273,928 - DZA65_RS19730 0.48 -1.1 4,273,928 - DZA65_RS19730 0.48 -0.5 4,273,928 - DZA65_RS19730 0.48 +0.7 4,273,992 + DZA65_RS19730 0.53 +1.1 4,274,044 + DZA65_RS19730 0.58 -1.3 4,274,044 + DZA65_RS19730 0.58 +2.1 4,274,044 + DZA65_RS19730 0.58 -0.5 4,274,044 + DZA65_RS19730 0.58 -3.1 4,274,045 - DZA65_RS19730 0.58 +2.7 4,274,045 - DZA65_RS19730 0.58 -0.9 4,274,045 - DZA65_RS19730 0.58 -2.2 4,274,045 - DZA65_RS19730 0.58 -1.2 4,274,092 + DZA65_RS19730 0.62 -1.1 4,274,092 + DZA65_RS19730 0.62 -0.5 4,274,093 - DZA65_RS19730 0.62 -0.2 4,274,093 - DZA65_RS19730 0.62 -1.1 4,274,164 + DZA65_RS19730 0.69 -1.2 4,274,165 - DZA65_RS19730 0.69 -3.7 4,274,171 + DZA65_RS19730 0.69 -2.1 4,274,171 + DZA65_RS19730 0.69 -0.9 4,274,171 + DZA65_RS19730 0.69 -1.9 4,274,171 + DZA65_RS19730 0.69 -2.2 4,274,171 + DZA65_RS19730 0.69 -1.7 4,274,172 - DZA65_RS19730 0.69 -3.0 4,274,172 - DZA65_RS19730 0.69 -1.2 4,274,172 - DZA65_RS19730 0.69 +1.1 4,274,172 - DZA65_RS19730 0.69 -1.9 4,274,172 - DZA65_RS19730 0.69 -2.3 4,274,172 - DZA65_RS19730 0.69 -2.1 4,274,172 - DZA65_RS19730 0.69 -0.7 4,274,172 - DZA65_RS19730 0.69 -2.1 4,274,172 - DZA65_RS19730 0.69 -1.2 4,274,172 - DZA65_RS19730 0.69 -0.7 4,274,172 - DZA65_RS19730 0.69 -0.8 4,274,255 + DZA65_RS19730 0.77 -0.8 4,274,274 + DZA65_RS19730 0.78 +1.1 4,274,274 + DZA65_RS19730 0.78 -2.2 4,274,275 - DZA65_RS19730 0.79 -1.0 4,274,294 + DZA65_RS19730 0.80 -2.7 4,274,294 + DZA65_RS19730 0.80 -2.7 4,274,294 + DZA65_RS19730 0.80 -1.9 4,274,295 - DZA65_RS19730 0.80 -0.2 4,274,295 - DZA65_RS19730 0.80 -1.7 4,274,309 + DZA65_RS19730 0.82 -2.5 4,274,309 + DZA65_RS19730 0.82 -1.6 4,274,310 - DZA65_RS19730 0.82 +0.1 4,274,310 - DZA65_RS19730 0.82 -1.7 4,274,310 - DZA65_RS19730 0.82 +1.1 4,274,313 + DZA65_RS19730 0.82 -2.5 4,274,313 + DZA65_RS19730 0.82 -0.5 4,274,314 - DZA65_RS19730 0.82 -1.2 4,274,326 + DZA65_RS19730 0.83 -2.8 4,274,327 - DZA65_RS19730 0.83 -0.8 4,274,440 + -2.6 4,274,441 - -1.4 4,274,441 - -0.2 4,274,507 + -0.5 4,274,508 - -2.8 4,274,648 - DZA65_RS19735 0.11 -1.7 4,274,658 - +0.8 4,274,804 + -2.4 4,274,804 + DZA65_RS19735 0.30 -0.5 4,274,806 + DZA65_RS19735 0.31 -1.9 4,274,806 + DZA65_RS19735 0.31 -2.6 4,274,806 + DZA65_RS19735 0.31 -0.9 4,274,807 - DZA65_RS19735 0.31 -1.2 4,274,808 + DZA65_RS19735 0.31 -0.9 4,274,809 - DZA65_RS19735 0.31 +0.5 4,274,860 - DZA65_RS19735 0.38 -1.7 4,274,920 + DZA65_RS19735 0.45 -1.9 4,274,951 - DZA65_RS19735 0.49 -2.1 4,275,009 + DZA65_RS19735 0.56 -1.7 4,275,058 - DZA65_RS19735 0.63 -0.9 4,275,058 - DZA65_RS19735 0.63 -0.2 4,275,066 + DZA65_RS19735 0.64 -2.1 4,275,066 + DZA65_RS19735 0.64 -1.5 4,275,066 + DZA65_RS19735 0.64 -0.2 4,275,067 - DZA65_RS19735 0.64 -1.5 4,275,067 - DZA65_RS19735 0.64 -1.2 4,275,085 + DZA65_RS19735 0.66 -2.4 4,275,177 - DZA65_RS19735 0.78 -1.2 4,275,184 - DZA65_RS19735 0.79 -2.1 4,275,284 - +0.1 4,275,353 + -2.1 4,275,354 - -1.9 4,275,404 + -2.4 4,275,404 + -3.2 4,275,404 + -1.2 4,275,405 - +0.1 4,275,482 + DZA65_RS19740 0.17 -0.5 4,275,482 + DZA65_RS19740 0.17 -1.2 4,275,483 - DZA65_RS19740 0.17 -1.2 4,275,483 - DZA65_RS19740 0.17 -2.2 4,275,483 - DZA65_RS19740 0.17 -2.7 4,275,506 - DZA65_RS19740 0.20 -3.2 4,275,522 + DZA65_RS19740 0.23 -2.4 4,275,522 + DZA65_RS19740 0.23 -2.6 4,275,522 + DZA65_RS19740 0.23 +0.1 4,275,523 - DZA65_RS19740 0.23 -0.1 4,275,523 - DZA65_RS19740 0.23 -3.2 4,275,550 - DZA65_RS19740 0.27 +1.5 4,275,550 - DZA65_RS19740 0.27 -1.9 4,275,556 + DZA65_RS19740 0.27 -1.7 4,275,574 + DZA65_RS19740 0.30 -0.2 4,275,602 + DZA65_RS19740 0.34 -0.5 4,275,629 - DZA65_RS19740 0.37 -0.9 4,275,629 - DZA65_RS19740 0.37 -1.2 4,275,704 + DZA65_RS19740 0.48 -1.5 4,275,705 - DZA65_RS19740 0.48 +1.3 4,275,705 - DZA65_RS19740 0.48 -2.1 4,275,705 - DZA65_RS19740 0.48 -1.5 4,275,705 - DZA65_RS19740 0.48 +1.1 4,275,706 + DZA65_RS19740 0.48 -0.5 4,275,707 - DZA65_RS19740 0.48 -0.9 4,275,755 - DZA65_RS19740 0.55 -2.5 4,275,762 - DZA65_RS19740 0.55 -2.2 4,275,794 - DZA65_RS19740 0.60 -1.5 4,275,794 - DZA65_RS19740 0.60 -3.1 4,275,794 - DZA65_RS19740 0.60 -0.5 4,275,915 - DZA65_RS19740 0.76 -0.8 4,275,962 - DZA65_RS19740 0.83 -2.1 4,276,071 + +0.5 4,276,075 + -0.5 4,276,075 + -0.2 4,276,121 - -1.5 4,276,187 + -1.1 4,276,192 + DZA65_RS19745 0.10 -0.9 4,276,205 + DZA65_RS19745 0.11 -1.6 4,276,272 + DZA65_RS19745 0.19 -3.4 4,276,297 + DZA65_RS19745 0.21 -1.9 4,276,350 - DZA65_RS19745 0.27 -1.4
Or see this region's nucleotide sequence